Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006604.1

Orthogroup ID

OG0007353

Physical Location & Seq

Genomic Coordinates Reverse (-)

28099 .. 28686

Gene Structure 588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006604.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

atggatctggtgaagtttctttctcccaagcacgtgattcttgttcatggtgagaagcctaggattgctactctaaaaggaagaattcaatccgaactgggaattcaatgctacgaccctgcaaacaatgagaccgtgtcagttccgtccacccactatgcgaccgcaatagcttctgatgcatttgtccaaagttgctcaaatccaaacttcaagttttctacaagcaactcagaacacgaacaaggttcaagttcaagtaacagaaaatccattccacgactgcaagtaagtgatgatagggtagccaaagggatcttggttatggagaaaaacaaaaaagccaaggtagtgcaccaagatgagctcttggtcatgttagaagaaaagaagcaccaagtcaagtttacatattgctgtcctgctcacattggtaacttgcaagagaatcaagagactgagaacaccggcctgcctctgtcttcaacaaacaatgatatgcttcagctattgtctgcaaaactcacaaatgaactctcggggatcaccttcaagtggagtcgttactcaaaactcacttatgagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000741 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0009553 GO:0009559 GO:0009561 GO:0009987 GO:0010197 GO:0016043 GO:0030154 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Beta-Casp Lactamase_B_6 RMMBL zf-RING_2

Protein Analysis

195

Amino Acids

21.82

Weight (kDa)

8.29

Isoelectric Point (pI)

38.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007353)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01730 AT2G01730
fragaria_vesca	FvH4_4g33520
malus_domestica	MD16G1018300.v1.1
prunus_persica	Prupe.1G333600_v2.0.a1
pyrus_communis	pycom16g01670
rosa_chinensis	RchiOBHm_Chr3g0480131 RchiOBHm_Chr4g0443031
rosa_laevigata	RLG00000005961
rosa_multiflora	Rmu_co8263599.1_g000001 Rmu_sc0006604.1_g000001 Rmu_sc0006604.1_g000004 Rmu_sc0008055.1_g000002 Rmu_sc0011261.1_g000006
rosa_roxburghii	Rroxscaffold_5G00383660
rosa_rugosa	Rorug04G0343900
rosa_samantha	Rh3AG232100 Rh3CG261900 Rh3DG257700 Rh4AG398100 Rh4BG409600 Rh4CG425100 Rh4DG404400
rosa_wichuraiana	Rw3G020840 Rw4G034290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	165
AclWI	GGATC	3 cut(s)	12, 323, 551
AcsI	RAATTY	2 cut(s)	84, 102
AcuI	CTGAAG	1 cut(s)	488
AcvI	CACGTG	1 cut(s)	34
AfiI	CCNNNNNNNGG	1 cut(s)	555
AgsI	TTSAA	7 cut(s)	89, 107, 214, 252, 258, 486, 553
AluBI	AGCT	3 cut(s)	173, 367, 508
AluI	AGCT	3 cut(s)	173, 367, 508
Alw21I	GWGCWC	2 cut(s)	357, 369
Alw26I	GTCTC	2 cut(s)	125, 449
Alw44I	GTGCAC	1 cut(s)	353
AlwI	GGATC	3 cut(s)	12, 323, 551
Ama87I	CYCGRG	1 cut(s)	538
AoxI	GGCC	1 cut(s)	469
ApaLI	GTGCAC	1 cut(s)	353
ApoI	RAATTY	2 cut(s)	84, 102
AspA2I	CCTAGG	1 cut(s)	59
AsuHPI	GGTGA	3 cut(s)	22, 62, 538
AvaI	CYCGRG	1 cut(s)	538
AvrII	CCTAGG	1 cut(s)	59
BaeGI	GKGCMC	1 cut(s)	357
BanII	GRGCYC	1 cut(s)	369
BbrPI	CACGTG	1 cut(s)	34
BbsI	GAAGAC	1 cut(s)	474
Bbv12I	GWGCWC	2 cut(s)	357, 369
BcoDI	GTCTC	2 cut(s)	125, 449
BfaI	CTAG	1 cut(s)	60
BlnI	CCTAGG	1 cut(s)	59
BmeT110I	CYCGRG	1 cut(s)	538
BmrI	ACTGGG	1 cut(s)	107
BmsI	GCATC	1 cut(s)	169
BmuI	ACTGGG	1 cut(s)	107
BpiI	GAAGAC	1 cut(s)	474
BsaAI	YACGTR	1 cut(s)	34
BsaI	GGTCTC	1 cut(s)	125
BsaJI	CCNNGG	2 cut(s)	59, 345
Bsc4I	CCNNNNNNNGG	1 cut(s)	555
Bse118I	RCCGGY	1 cut(s)	467
Bse1I	ACTGG	1 cut(s)	102
BseDI	CCNNGG	2 cut(s)	59, 345
BseLI	CCNNNNNNNGG	1 cut(s)	555
BseMII	CTCAG	2 cut(s)	246, 450
BseNI	ACTGG	1 cut(s)	102
BseSI	GKGCMC	1 cut(s)	357
Bsh1285I	CGRYCG	1 cut(s)	165
BshFI	GGCC	1 cut(s)	471
BsiEI	CGRYCG	1 cut(s)	165
BsiHKAI	GWGCWC	2 cut(s)	357, 369
BsiHKCI	CYCGRG	1 cut(s)	538
BsiSI	CCGG	1 cut(s)	468
BslI	CCNNNNNNNGG	1 cut(s)	555
BsmAI	GTCTC	2 cut(s)	125, 449
BsnI	GGCC	1 cut(s)	471
Bso31I	GGTCTC	1 cut(s)	125
BsoBI	CYCGRG	1 cut(s)	538
Bsp1286I	GDGCHC	2 cut(s)	357, 369
Bsp143I	GATC	3 cut(s)	4, 315, 543
BspACI	CCGC	1 cut(s)	165
BspANI	GGCC	1 cut(s)	471
BspCNI	CTCAG	2 cut(s)	245, 451
BspPI	GGATC	3 cut(s)	12, 323, 551
BspTNI	GGTCTC	1 cut(s)	125
BsrFI	RCCGGY	1 cut(s)	467
BsrI	ACTGG	1 cut(s)	102
BssAI	RCCGGY	1 cut(s)	467
BssECI	CCNNGG	2 cut(s)	59, 345
BssMI	GATC	3 cut(s)	4, 315, 543
BssT1I	CCWWGG	2 cut(s)	59, 345
Bst4CI	ACNGT	1 cut(s)	136
BstBAI	YACGTR	1 cut(s)	34
BstC8I	GCNNGC	1 cut(s)	473
BstDEI	CTNAG	2 cut(s)	232, 459
BstKTI	GATC	3 cut(s)	7, 318, 546
BstMAI	GTCTC	2 cut(s)	125, 449
BstMBI	GATC	3 cut(s)	4, 315, 543
BstMCI	CGRYCG	1 cut(s)	165
BstMWI	GCNNNNNNNGC	1 cut(s)	179
BstSLI	GKGCMC	1 cut(s)	357
BstV2I	GAAGAC	1 cut(s)	474
BstX2I	RGATCY	2 cut(s)	4, 315
BstYI	RGATCY	2 cut(s)	4, 315
BsuRI	GGCC	1 cut(s)	471
Cac8I	GCNNGC	1 cut(s)	473
Cfr10I	RCCGGY	1 cut(s)	467
CviAII	CATG	2 cut(s)	47, 376
CviJI	RGCY	7 cut(s)	58, 173, 308, 344, 367, 471, 508
CviKI_1	RGCY	7 cut(s)	58, 173, 308, 344, 367, 471, 508
DdeI	CTNAG	2 cut(s)	232, 459
DpnI	GATC	3 cut(s)	6, 317, 545
DpnII	GATC	3 cut(s)	4, 315, 543
Ecl136II	GAGCTC	1 cut(s)	367
Eco130I	CCWWGG	2 cut(s)	59, 345
Eco24I	GRGCYC	1 cut(s)	369
Eco31I	GGTCTC	1 cut(s)	125
Eco53kI	GAGCTC	1 cut(s)	367
Eco57I	CTGAAG	1 cut(s)	488
Eco72I	CACGTG	1 cut(s)	34
Eco88I	CYCGRG	1 cut(s)	538
EcoICRI	GAGCTC	1 cut(s)	367
EcoRI	GAATTC	2 cut(s)	84, 102
EcoT14I	CCWWGG	2 cut(s)	59, 345
EcoT22I	ATGCAT	1 cut(s)	184
EcoT38I	GRGCYC	1 cut(s)	369
ErhI	CCWWGG	2 cut(s)	59, 345
FaeI	CATG	2 cut(s)	50, 379
FaiI	YATR	7 cut(s)	48, 159, 326, 377, 412, 500, 582
FatI	CATG	2 cut(s)	46, 375
FriOI	GRGCYC	1 cut(s)	369
FspBI	CTAG	1 cut(s)	60
HaeIII	GGCC	1 cut(s)	471
HapII	CCGG	1 cut(s)	468
Hin1II	CATG	2 cut(s)	50, 379
HinfI	GANTC	3 cut(s)	37, 448, 559
HpaII	CCGG	1 cut(s)	468
HphI	GGTGA	3 cut(s)	22, 62, 538
Hpy166II	GTNNAC	3 cut(s)	150, 355, 408
Hpy188I	TCNGA	3 cut(s)	94, 178, 235
Hpy188III	TCNNGA	1 cut(s)	452
Hpy8I	GTNNAC	3 cut(s)	150, 355, 408
HpyAV	CCTTC	1 cut(s)	559
HpyCH4III	ACNGT	1 cut(s)	136
HpyCH4IV	ACGT	1 cut(s)	33
HpyCH4V	TGCA	6 cut(s)	122, 182, 286, 355, 442, 518
HpyF10VI	GCNNNNNNNGC	1 cut(s)	179
HpyF3I	CTNAG	2 cut(s)	232, 459
HpySE526I	ACGT	1 cut(s)	33
Hsp92II	CATG	2 cut(s)	50, 379
Kzo9I	GATC	3 cut(s)	4, 315, 543
LpnPI	CCDG	5 cut(s)	83, 132, 435, 481, 485
LweI	GCATC	1 cut(s)	169
MaeI	CTAG	1 cut(s)	60
MaeII	ACGT	1 cut(s)	33
MaeIII	GTNAC	3 cut(s)	260, 434, 563
MalI	GATC	3 cut(s)	6, 317, 545
MboI	GATC	3 cut(s)	4, 315, 543
MboII	GAAGA	3 cut(s)	93, 395, 474
MflI	RGATCY	2 cut(s)	4, 315
MhlI	GDGCHC	2 cut(s)	357, 369
MluCI	AATT	2 cut(s)	84, 102
MlyI	GAGTC	1 cut(s)	568
MnlI	CCTC	1 cut(s)	486
Mph1103I	ATGCAT	1 cut(s)	184
MslI	CAYNNNNRTG	1 cut(s)	360
MspI	CCGG	1 cut(s)	468
MwoI	GCNNNNNNNGC	1 cut(s)	179
NdeII	GATC	3 cut(s)	4, 315, 543
NlaIII	CATG	2 cut(s)	50, 379
NsiI	ATGCAT	1 cut(s)	184
PfeI	GAWTC	2 cut(s)	37, 448
PflFI	GACNNNGTC	1 cut(s)	136
PleI	GAGTC	1 cut(s)	567
PmaCI	CACGTG	1 cut(s)	34
PmlI	CACGTG	1 cut(s)	34
PpsI	GAGTC	1 cut(s)	567
Ppu21I	YACGTR	1 cut(s)	34
Psp124BI	GAGCTC	1 cut(s)	369
PspCI	CACGTG	1 cut(s)	34
PsuI	RGATCY	2 cut(s)	4, 315
PsyI	GACNNNGTC	1 cut(s)	136
RseI	CAYNNNNRTG	1 cut(s)	360
SacI	GAGCTC	1 cut(s)	369
Sau3AI	GATC	3 cut(s)	4, 315, 543
SchI	GAGTC	1 cut(s)	568
SduI	GDGCHC	2 cut(s)	357, 369
SetI	ASST	7 cut(s)	36, 175, 250, 351, 369, 510, 551
SfaNI	GCATC	1 cut(s)	169
SmiMI	CAYNNNNRTG	1 cut(s)	360
Sse9I	AATT	2 cut(s)	84, 102
SsiI	CCGC	1 cut(s)	165
SspMI	CTAG	1 cut(s)	60
SstI	GAGCTC	1 cut(s)	369
StyI	CCWWGG	2 cut(s)	59, 345
TaaI	ACNGT	1 cut(s)	136
TaiI	ACGT	1 cut(s)	36
TasI	AATT	2 cut(s)	84, 102
TfiI	GAWTC	2 cut(s)	37, 448
TspDTI	ATGAA	2 cut(s)	35, 546
TspGWI	ACGGA	1 cut(s)	135
Tth111I	GACNNNGTC	1 cut(s)	136
VneI	GTGCAC	1 cut(s)	353
XapI	RAATTY	2 cut(s)	84, 102
XcmI	CCANNNNNNNNNTGG	1 cut(s)	316
XmaJI	CCTAGG	1 cut(s)	59
XspI	CTAG	1 cut(s)	60
Zsp2I	ATGCAT	1 cut(s)	184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.