Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8320689.1

Orthogroup ID

OG0006451

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 946

Gene Structure 946 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8320689.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 392 bp

cttttcgctaggcctccggcgccgcgtgcgcttcctccggtggtccccgatgacgacgcgccgccgattcggtggcgcaagggcgagttgattgggtctggtgccttcgggcgggtctatatggggatgaatctcgattccggagagcttattgccgtgaaacaggtttcgattgctgcaagtagtgcttcaaaggagaagacacaggcccatattcgagagttggaggaggaagtgaggcttcttaagaatctttcacacccaaacattgttaggtacttggggactgctagagaagccgattcgttgaatattctgttggagtttgtgccaggtggatccatatcctccctcttggggaaatttgggtcctttcccgagtctgtaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006996 GO:0007010 GO:0007017 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009893 GO:0009987 GO:0010562 GO:0010604 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0030865 GO:0031098 GO:0031122 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043412 GO:0043549 GO:0043622 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0046777 GO:0048046 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0080090 GO:0097435 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Pkinase

Protein Analysis

130

Amino Acids

14.02

Weight (kDa)

6.96

Isoelectric Point (pI)

53.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006451)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06030
fragaria_vesca	FvH4_4g14910 FvH4_4g14910
malus_domestica	MD13G1186500.v1.1 MD16G1187200.v1.1
prunus_persica	Prupe.1G154200_v2.0.a1 Prupe.1G154200_v2.0.a1
pyrus_communis	pycom13g16140 pycom16g15720
rosa_chinensis	RchiOBHm_Chr4g0417171
rosa_laevigata	RLG00000007924
rosa_multiflora	Rmu_co8320689.1_g000001 Rmu_sc0000959.1_g000002 Rmu_sc0001643.1_g000003
rosa_roxburghii	Rroxscaffold_3G00245000 Rroxscaffold_5G00361000
rosa_rugosa	Rorug02G0282700 Rorug04G0146200
rosa_samantha	Rh2AG335100 Rh4AG209200 Rh4BG206100 Rh4BG206300 Rh4CG220200 Rh4DG206900 Rh5AG248600
rosa_wichuraiana	Rw4G017720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	19, 101
AccII	CGCG	2 cut(s)	25, 59
AccIII	TCCGGA	1 cut(s)	140
AciI	CCGC	3 cut(s)	23, 62, 112
AclWI	GGATC	2 cut(s)	333, 346
AcsI	RAATTY	1 cut(s)	362
AcyI	GRCGYC	1 cut(s)	20
AfaI	GTAC	1 cut(s)	278
AfiI	CCNNNNNNNGG	2 cut(s)	111, 357
AflII	CTTAAG	1 cut(s)	245
AgsI	TTSAA	2 cut(s)	192, 310
AjnI	CCWGG	1 cut(s)	331
AjuI	GAANNNNNNNTTGG	2 cut(s)	302, 334
AluBI	AGCT	1 cut(s)	148
AluI	AGCT	1 cut(s)	148
AlwI	GGATC	2 cut(s)	333, 346
Ama87I	CYCGRG	1 cut(s)	377
Aor13HI	TCCGGA	1 cut(s)	140
AoxI	GGCC	2 cut(s)	11, 207
ApeKI	GCWGC	1 cut(s)	176
ApoI	RAATTY	1 cut(s)	362
AspLEI	GCGC	4 cut(s)	22, 31, 61, 78
AspS9I	GGNCC	3 cut(s)	43, 208, 369
AvaI	CYCGRG	1 cut(s)	377
AvaII	GGWCC	2 cut(s)	43, 369
BamHI	GGATCC	1 cut(s)	338
BanI	GGYRCC	2 cut(s)	19, 101
BbsI	GAAGAC	1 cut(s)	206
BbvI	GCAGC	1 cut(s)	163
BceAI	ACGGC	1 cut(s)	140
BciT130I	CCWGG	1 cut(s)	333
BfaI	CTAG	2 cut(s)	9, 291
BfoI	RGCGCY	1 cut(s)	23
BfrI	CTTAAG	1 cut(s)	245
BisI	GCNGC	3 cut(s)	23, 62, 177
BlsI	GCNGC	3 cut(s)	24, 63, 178
Bme1390I	CCNGG	1 cut(s)	333
Bme18I	GGWCC	2 cut(s)	43, 369
BmeT110I	CYCGRG	1 cut(s)	377
BmgT120I	GGNCC	3 cut(s)	43, 208, 369
BmiI	GGNNCC	5 cut(s)	21, 45, 103, 340, 370
BmrFI	CCNGG	1 cut(s)	333
BpiI	GAAGAC	1 cut(s)	206
BsaBI	GATNNNNATC	1 cut(s)	343
BsaHI	GRCGYC	1 cut(s)	20
BsaWI	WCCGGW	2 cut(s)	37, 140
Bsc4I	CCNNNNNNNGG	2 cut(s)	111, 357
Bse8I	GATNNNNATC	1 cut(s)	343
BseAI	TCCGGA	1 cut(s)	140
BseBI	CCWGG	1 cut(s)	333
BseGI	GGATG	1 cut(s)	132
BseJI	GATNNNNATC	1 cut(s)	343
BseLI	CCNNNNNNNGG	2 cut(s)	111, 357
BseRI	GAGGAG	1 cut(s)	242
BseXI	GCAGC	1 cut(s)	163
Bsh1236I	CGCG	2 cut(s)	25, 59
BshFI	GGCC	2 cut(s)	13, 209
BshNI	GGYRCC	2 cut(s)	19, 101
BsiHKCI	CYCGRG	1 cut(s)	377
BsiSI	CCGG	3 cut(s)	17, 38, 141
BslFI	GGGAC	2 cut(s)	29, 298
BslI	CCNNNNNNNGG	2 cut(s)	111, 357
BsmFI	GGGAC	2 cut(s)	29, 298
BsnI	GGCC	2 cut(s)	13, 209
BsoBI	CYCGRG	1 cut(s)	377
Bsp13I	TCCGGA	1 cut(s)	140
Bsp143I	GATC	1 cut(s)	338
BspACI	CCGC	3 cut(s)	23, 62, 112
BspANI	GGCC	2 cut(s)	13, 209
BspEI	TCCGGA	1 cut(s)	140
BspFNI	CGCG	2 cut(s)	25, 59
BspLI	GGNNCC	5 cut(s)	21, 45, 103, 340, 370
BspPI	GGATC	2 cut(s)	333, 346
BspT107I	GGYRCC	2 cut(s)	19, 101
BspTI	CTTAAG	1 cut(s)	245
BssMI	GATC	1 cut(s)	338
BssNI	GRCGYC	1 cut(s)	20
Bst2UI	CCWGG	1 cut(s)	333
BstACI	GRCGYC	1 cut(s)	20
BstAFI	CTTAAG	1 cut(s)	245
BstAPI	GCANNNNNTGC	1 cut(s)	185
BstC8I	GCNNGC	1 cut(s)	27
BstF5I	GGATG	1 cut(s)	132
BstFNI	CGCG	2 cut(s)	25, 59
BstH2I	RGCGCY	1 cut(s)	23
BstHHI	GCGC	4 cut(s)	22, 31, 61, 78
BstKTI	GATC	1 cut(s)	341
BstMBI	GATC	1 cut(s)	338
BstMWI	GCNNNNNNNGC	5 cut(s)	19, 26, 28, 185, 296
BstNI	CCWGG	1 cut(s)	333
BstSCI	CCNGG	1 cut(s)	331
BstUI	CGCG	2 cut(s)	25, 59
BstV1I	GCAGC	1 cut(s)	163
BstV2I	GAAGAC	1 cut(s)	206
BstX2I	RGATCY	1 cut(s)	338
BstYI	RGATCY	1 cut(s)	338
BsuRI	GGCC	2 cut(s)	13, 209
BtsCI	GGATG	1 cut(s)	132
Cac8I	GCNNGC	1 cut(s)	27
CfoI	GCGC	4 cut(s)	22, 31, 61, 78
Cfr13I	GGNCC	3 cut(s)	43, 208, 369
CseI	GACGC	1 cut(s)	65
Csp6I	GTAC	1 cut(s)	277
CviJI	RGCY	5 cut(s)	13, 148, 209, 241, 299
CviKI_1	RGCY	5 cut(s)	13, 148, 209, 241, 299
CviQI	GTAC	1 cut(s)	277
DinI	GGCGCC	1 cut(s)	21
DpnI	GATC	1 cut(s)	340
DpnII	GATC	1 cut(s)	338
Eco147I	AGGCCT	1 cut(s)	13
Eco47I	GGWCC	2 cut(s)	43, 369
Eco88I	CYCGRG	1 cut(s)	377
EcoO109I	RGGNCCY	1 cut(s)	369
EcoRII	CCWGG	1 cut(s)	331
EgeI	GGCGCC	1 cut(s)	21
EheI	GGCGCC	1 cut(s)	21
FaiI	YATR	4 cut(s)	120, 122, 213, 344
FalI	AAGNNNNNCTT	4 cut(s)	172, 204, 225, 257
FaqI	GGGAC	2 cut(s)	29, 298
FauI	CCCGC	1 cut(s)	105
Fnu4HI	GCNGC	3 cut(s)	23, 62, 177
FokI	GGATG	1 cut(s)	139
Fsp4HI	GCNGC	3 cut(s)	23, 62, 177
FspBI	CTAG	2 cut(s)	9, 291
GlaI	GCGC	4 cut(s)	21, 30, 60, 77
GluI	GCNGC	3 cut(s)	23, 62, 177
HaeII	RGCGCY	1 cut(s)	23
HaeIII	GGCC	2 cut(s)	13, 209
HapII	CCGG	3 cut(s)	17, 38, 141
HgaI	GACGC	1 cut(s)	65
HhaI	GCGC	4 cut(s)	22, 31, 61, 78
Hin1I	GRCGYC	1 cut(s)	20
Hin6I	GCGC	4 cut(s)	20, 29, 59, 76
HinP1I	GCGC	4 cut(s)	20, 29, 59, 76
HinfI	GANTC	6 cut(s)	67, 130, 137, 250, 302, 380
HpaII	CCGG	3 cut(s)	17, 38, 141
Hpy188III	TCNNGA	4 cut(s)	134, 141, 218, 377
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	1 cut(s)	115
HpyCH4V	TGCA	1 cut(s)	179
HpyF10VI	GCNNNNNNNGC	5 cut(s)	19, 26, 28, 185, 296
Hsp92I	GRCGYC	1 cut(s)	20
HspAI	GCGC	4 cut(s)	20, 29, 59, 76
KasI	GGCGCC	1 cut(s)	19
Kpn2I	TCCGGA	1 cut(s)	140
Kzo9I	GATC	1 cut(s)	338
LpnPI	CCDG	8 cut(s)	30, 51, 84, 149, 154, 191, 318, 345
Lsp1109I	GCAGC	1 cut(s)	163
MaeI	CTAG	2 cut(s)	9, 291
MalI	GATC	1 cut(s)	340
MboI	GATC	1 cut(s)	338
MboII	GAAGA	1 cut(s)	211
MflI	RGATCY	1 cut(s)	338
MluCI	AATT	1 cut(s)	362
Mly113I	GGCGCC	1 cut(s)	20
MlyI	GAGTC	1 cut(s)	389
MmeI	TCCRAC	2 cut(s)	204, 300
MnlI	CCTC	7 cut(s)	24, 45, 220, 223, 231, 358, 362
MroI	TCCGGA	1 cut(s)	140
MseI	TTAA	1 cut(s)	246
MspCI	CTTAAG	1 cut(s)	245
MspI	CCGG	3 cut(s)	17, 38, 141
MspR9I	CCNGG	1 cut(s)	333
MvaI	CCWGG	1 cut(s)	333
MvnI	CGCG	2 cut(s)	25, 59
MwoI	GCNNNNNNNGC	5 cut(s)	19, 26, 28, 185, 296
NarI	GGCGCC	1 cut(s)	20
NdeII	GATC	1 cut(s)	338
NlaIV	GGNNCC	5 cut(s)	21, 45, 103, 340, 370
PceI	AGGCCT	1 cut(s)	13
PfeI	GAWTC	5 cut(s)	67, 130, 137, 250, 302
PkrI	GCNGC	3 cut(s)	24, 63, 178
PleI	GAGTC	1 cut(s)	388
PluTI	GGCGCC	1 cut(s)	23
PpsI	GAGTC	1 cut(s)	388
PpuMI	RGGWCCY	1 cut(s)	369
Psp5II	RGGWCCY	1 cut(s)	369
Psp6I	CCWGG	1 cut(s)	331
PspGI	CCWGG	1 cut(s)	331
PspN4I	GGNNCC	5 cut(s)	21, 45, 103, 340, 370
PspPI	GGNCC	3 cut(s)	43, 208, 369
PspPPI	RGGWCCY	1 cut(s)	369
PsuI	RGATCY	1 cut(s)	338
RsaI	GTAC	1 cut(s)	278
RsaNI	GTAC	1 cut(s)	277
SaqAI	TTAA	1 cut(s)	246
SatI	GCNGC	3 cut(s)	23, 62, 177
Sau3AI	GATC	1 cut(s)	338
Sau96I	GGNCC	3 cut(s)	43, 208, 369
SchI	GAGTC	1 cut(s)	389
ScrFI	CCNGG	1 cut(s)	333
SetI	ASST	4 cut(s)	150, 168, 278, 337
SfoI	GGCGCC	1 cut(s)	21
SinI	GGWCC	2 cut(s)	43, 369
SmlI	CTYRAG	1 cut(s)	245
SmoI	CTYRAG	1 cut(s)	245
Sse9I	AATT	1 cut(s)	362
SseBI	AGGCCT	1 cut(s)	13
SsiI	CCGC	3 cut(s)	23, 62, 112
SspDI	GGCGCC	1 cut(s)	19
SspI	AATATT	1 cut(s)	313
SspMI	CTAG	2 cut(s)	9, 291
StuI	AGGCCT	1 cut(s)	13
StyD4I	CCNGG	1 cut(s)	331
TaqI	TCGA	3 cut(s)	135, 170, 217
TasI	AATT	1 cut(s)	362
TauI	GCSGC	2 cut(s)	25, 64
TfiI	GAWTC	5 cut(s)	67, 130, 137, 250, 302
Tru1I	TTAA	1 cut(s)	246
Tru9I	TTAA	1 cut(s)	246
TseI	GCWGC	1 cut(s)	176
TspDTI	ATGAA	1 cut(s)	143
Vha464I	CTTAAG	1 cut(s)	245
VpaK11BI	GGWCC	2 cut(s)	43, 369
XapI	RAATTY	1 cut(s)	362
XspI	CTAG	2 cut(s)	9, 291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.