Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0006451

Physical Location & Seq

Genomic Coordinates Forward (+)

31028194 .. 31040673

Gene Structure 12480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG248600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGAATTCTATGAGAATACAGAACTTAAAAACTTAACAAAAGTCGACTGGCATGATCTTCCCATATCAAATCTAAAGGGCACTCTGGACACCAATTACACTGGTGAACCACCAGCTCCATCGCTCTTTGTTTCTGACACGCTGACTGACCCCGCCACTCCGTGTGGGGATATTTTGTCGAACCCATCAACTGAGTTTCCAGCTTCTTTCTTCTTTTGCTCGTTGACATCTGATATTTGTTTAACAATGTCGCCAATCATTTTAGATTCATACCTAGAAAGCAAATGCAAGACATTCGGATCAGTTCGCCAATCACTCTATTTTCGAACACTGCCGGACATCGATGACTCCTCAGTAACCATAGTCAACAACATCAGCGCCTCAATTCAAAAATCCAGATTCTTCTCCAAACCCTCGTTGCCACCGCAGCCGTCGATCCCCAAAGACGCCGCGCTTCCGATTCGATGGCGAAAAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0000186 GO:0000226 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004709 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0006996 GO:0007010 GO:0007017 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0030865 GO:0031098 GO:0031122 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043405 GO:0043406 GO:0043408 GO:0043410 GO:0043412 GO:0043549 GO:0043622 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0046777 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0071900 GO:0071902 GO:0080090 GO:0097435 GO:0140096 GO:1901564 GO:1902531 GO:1902533

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Pkinase

Protein Analysis

159

Amino Acids

17.72

Weight (kDa)

4.81

Isoelectric Point (pI)

52.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006451)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06030
fragaria_vesca	FvH4_4g14910 FvH4_4g14910
malus_domestica	MD13G1186500.v1.1 MD16G1187200.v1.1
prunus_persica	Prupe.1G154200_v2.0.a1 Prupe.1G154200_v2.0.a1
pyrus_communis	pycom13g16140 pycom16g15720
rosa_chinensis	RchiOBHm_Chr4g0417171
rosa_laevigata	RLG00000007924
rosa_multiflora	Rmu_co8320689.1_g000001 Rmu_sc0000959.1_g000002 Rmu_sc0001643.1_g000003
rosa_roxburghii	Rroxscaffold_3G00245000 Rroxscaffold_5G00361000
rosa_rugosa	Rorug02G0282700 Rorug04G0146200
rosa_samantha	Rh2AG335100 Rh4AG209200 Rh4BG206100 Rh4BG206300 Rh4CG220200 Rh4DG206900 Rh5AG248600
rosa_wichuraiana	Rw4G017720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	45
AccII	CGCG	1 cut(s)	452
AciI	CCGC	3 cut(s)	153, 425, 450
AclWI	GGATC	2 cut(s)	307, 430
AcsI	RAATTY	1 cut(s)	5
AcyI	GRCGYC	1 cut(s)	447
AdeI	CACNNNGTG	1 cut(s)	162
AgsI	TTSAA	1 cut(s)	389
AluBI	AGCT	2 cut(s)	116, 203
AluI	AGCT	2 cut(s)	116, 203
AlwI	GGATC	2 cut(s)	307, 430
ApeKI	GCWGC	1 cut(s)	427
ApoI	RAATTY	1 cut(s)	5
AspLEI	GCGC	2 cut(s)	380, 454
AsuHPI	GGTGA	1 cut(s)	116
AsuII	TTCGAA	1 cut(s)	325
BaeGI	GKGCMC	1 cut(s)	83
BbvI	GCAGC	1 cut(s)	439
BccI	CCATC	3 cut(s)	127, 193, 459
BceAI	ACGGC	1 cut(s)	415
BcgI	CGANNNNNNTGC	2 cut(s)	277, 311
BfaI	CTAG	2 cut(s)	275, 478
BfoI	RGCGCY	1 cut(s)	381
BisI	GCNGC	2 cut(s)	428, 450
BlsI	GCNGC	2 cut(s)	429, 451
Bpu14I	TTCGAA	1 cut(s)	325
Bsa29I	ATCGAT	1 cut(s)	342
BsaHI	GRCGYC	1 cut(s)	447
Bse1I	ACTGG	2 cut(s)	53, 106
BseCI	ATCGAT	1 cut(s)	342
BseMII	CTCAG	2 cut(s)	183, 366
BseNI	ACTGG	2 cut(s)	53, 106
BseRI	GAGGAG	1 cut(s)	340
BseSI	GKGCMC	1 cut(s)	83
BseXI	GCAGC	1 cut(s)	439
Bsh1236I	CGCG	1 cut(s)	452
BshVI	ATCGAT	1 cut(s)	342
BsiSI	CCGG	1 cut(s)	335
Bsp119I	TTCGAA	1 cut(s)	325
Bsp1286I	GDGCHC	1 cut(s)	83
Bsp143I	GATC	3 cut(s)	55, 299, 435
BspACI	CCGC	3 cut(s)	153, 425, 450
BspCNI	CTCAG	2 cut(s)	184, 365
BspDI	ATCGAT	1 cut(s)	342
BspFNI	CGCG	1 cut(s)	452
BspPI	GGATC	2 cut(s)	307, 430
BspT104I	TTCGAA	1 cut(s)	325
BsrI	ACTGG	2 cut(s)	53, 106
BssMI	GATC	3 cut(s)	55, 299, 435
BssNI	GRCGYC	1 cut(s)	447
BstACI	GRCGYC	1 cut(s)	447
BstBI	TTCGAA	1 cut(s)	325
BstDEI	CTNAG	2 cut(s)	192, 352
BstFNI	CGCG	1 cut(s)	452
BstH2I	RGCGCY	1 cut(s)	381
BstHHI	GCGC	2 cut(s)	380, 454
BstKTI	GATC	3 cut(s)	58, 302, 438
BstMBI	GATC	3 cut(s)	55, 299, 435
BstMWI	GCNNNNNNNGC	1 cut(s)	427
BstSLI	GKGCMC	1 cut(s)	83
BstUI	CGCG	1 cut(s)	452
BstV1I	GCAGC	1 cut(s)	439
Bsu15I	ATCGAT	1 cut(s)	342
BsuTUI	ATCGAT	1 cut(s)	342
BtgZI	GCGATG	1 cut(s)	105
BtsI	GCAGTG	1 cut(s)	329
BtsIMutI	CAGTG	2 cut(s)	99, 329
CfoI	GCGC	2 cut(s)	380, 454
ClaI	ATCGAT	1 cut(s)	342
CseI	GACGC	1 cut(s)	455
CviAII	CATG	1 cut(s)	53
CviJI	RGCY	3 cut(s)	116, 203, 430
CviKI_1	RGCY	3 cut(s)	116, 203, 430
DdeI	CTNAG	2 cut(s)	192, 352
DpnI	GATC	3 cut(s)	57, 301, 437
DpnII	GATC	3 cut(s)	55, 299, 435
DraIII	CACNNNGTG	1 cut(s)	162
EcoRI	GAATTC	1 cut(s)	5
FaeI	CATG	1 cut(s)	56
FaiI	YATR	5 cut(s)	12, 54, 65, 271, 362
FatI	CATG	1 cut(s)	52
FauI	CCCGC	1 cut(s)	160
FblI	GTMKAC	1 cut(s)	45
Fnu4HI	GCNGC	2 cut(s)	428, 450
Fsp4HI	GCNGC	2 cut(s)	428, 450
FspBI	CTAG	2 cut(s)	275, 478
GlaI	GCGC	2 cut(s)	379, 453
GluI	GCNGC	2 cut(s)	428, 450
HaeII	RGCGCY	1 cut(s)	381
HapII	CCGG	1 cut(s)	335
HgaI	GACGC	1 cut(s)	455
HhaI	GCGC	2 cut(s)	380, 454
Hin1I	GRCGYC	1 cut(s)	447
Hin1II	CATG	1 cut(s)	56
Hin6I	GCGC	2 cut(s)	378, 452
HinP1I	GCGC	2 cut(s)	378, 452
HincII	GTYRAC	3 cut(s)	46, 225, 367
HindII	GTYRAC	3 cut(s)	46, 225, 367
HinfI	GANTC	4 cut(s)	266, 347, 399, 460
HpaII	CCGG	1 cut(s)	335
HphI	GGTGA	1 cut(s)	116
Hpy166II	GTNNAC	4 cut(s)	46, 107, 225, 367
Hpy188I	TCNGA	4 cut(s)	136, 232, 299, 459
Hpy188III	TCNNGA	2 cut(s)	86, 396
Hpy8I	GTNNAC	4 cut(s)	46, 107, 225, 367
Hpy99I	CGWCG	1 cut(s)	436
HpyCH4V	TGCA	1 cut(s)	288
HpyF10VI	GCNNNNNNNGC	1 cut(s)	427
HpyF3I	CTNAG	2 cut(s)	192, 352
Hsp92I	GRCGYC	1 cut(s)	447
Hsp92II	CATG	1 cut(s)	56
HspAI	GCGC	2 cut(s)	378, 452
Kzo9I	GATC	3 cut(s)	55, 299, 435
LmnI	GCTCC	1 cut(s)	121
LpnPI	CCDG	7 cut(s)	34, 71, 87, 126, 213, 348, 409
Lsp1109I	GCAGC	1 cut(s)	439
MaeI	CTAG	2 cut(s)	275, 478
MaeIII	GTNAC	1 cut(s)	355
MalI	GATC	3 cut(s)	57, 301, 437
MboI	GATC	3 cut(s)	55, 299, 435
MboII	GAAGA	3 cut(s)	50, 202, 394
MhlI	GDGCHC	1 cut(s)	83
MluCI	AATT	3 cut(s)	5, 94, 384
MlyI	GAGTC	1 cut(s)	341
MnlI	CCTC	3 cut(s)	361, 391, 424
MseI	TTAA	3 cut(s)	27, 35, 242
MspI	CCGG	1 cut(s)	335
MvnI	CGCG	1 cut(s)	452
MwoI	GCNNNNNNNGC	1 cut(s)	427
NdeII	GATC	3 cut(s)	55, 299, 435
NlaIII	CATG	1 cut(s)	56
NspV	TTCGAA	1 cut(s)	325
PfeI	GAWTC	3 cut(s)	266, 399, 460
PkrI	GCNGC	2 cut(s)	429, 451
PleI	GAGTC	1 cut(s)	341
PpsI	GAGTC	1 cut(s)	341
SalI	GTCGAC	1 cut(s)	44
SaqAI	TTAA	3 cut(s)	27, 35, 242
SatI	GCNGC	2 cut(s)	428, 450
Sau3AI	GATC	3 cut(s)	55, 299, 435
SchI	GAGTC	1 cut(s)	341
SduI	GDGCHC	1 cut(s)	83
SetI	ASST	3 cut(s)	118, 205, 276
SfuI	TTCGAA	1 cut(s)	325
Sse9I	AATT	3 cut(s)	5, 94, 384
SsiI	CCGC	3 cut(s)	153, 425, 450
SspMI	CTAG	2 cut(s)	275, 478
TaqI	TCGA	6 cut(s)	45, 179, 325, 342, 434, 463
TasI	AATT	3 cut(s)	5, 94, 384
TauI	GCSGC	1 cut(s)	452
TfiI	GAWTC	3 cut(s)	266, 399, 460
Tru1I	TTAA	3 cut(s)	27, 35, 242
Tru9I	TTAA	3 cut(s)	27, 35, 242
TscAI	CASTG	2 cut(s)	106, 336
TseI	GCWGC	1 cut(s)	427
TspDTI	ATGAA	1 cut(s)	258
TspGWI	ACGGA	1 cut(s)	150
TspRI	CASTG	2 cut(s)	106, 336
XapI	RAATTY	1 cut(s)	5
XmiI	GTMKAC	1 cut(s)	45
XspI	CTAG	2 cut(s)	275, 478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.