Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0006451

Physical Location & Seq

Genomic Coordinates Reverse (-)

35523551 .. 35523847

Gene Structure 297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG206300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGCAAGGCCTCGTCGGTTTGGTCCTCGAGTCCCTTGACTTCCGGACCAGCGGACTCGTCGACAAGATCGGCTCCAGCATTAGAAAATCGAGAATCGGGCTTTTCGCTAGGCCTCTGGCGCCGCGTGGGCTTCCTTCTGTGGTCCCCGATGACGACTCGCCGCCTATTCGGTGGCGCAAGGGCGAGTTGATTGGGTCTGGTGCCTTCGGGCGGGTCTATATGGGGATGAATCTCGATTCCGGAGAGCTTATTGCTTTGAAACAGGCCTGGGTATTACTAACTGTTTGGTTCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006996 GO:0007010 GO:0007017 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009893 GO:0009987 GO:0010562 GO:0010604 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0030865 GO:0031098 GO:0031122 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043412 GO:0043549 GO:0043622 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0046777 GO:0048046 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0080090 GO:0097435 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Pkinase

Protein Analysis

98

Amino Acids

10.71

Weight (kDa)

9.81

Isoelectric Point (pI)

34.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006451)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06030
fragaria_vesca	FvH4_4g14910 FvH4_4g14910
malus_domestica	MD13G1186500.v1.1 MD16G1187200.v1.1
prunus_persica	Prupe.1G154200_v2.0.a1 Prupe.1G154200_v2.0.a1
pyrus_communis	pycom13g16140 pycom16g15720
rosa_chinensis	RchiOBHm_Chr4g0417171
rosa_laevigata	RLG00000007924
rosa_multiflora	Rmu_co8320689.1_g000001 Rmu_sc0000959.1_g000002 Rmu_sc0001643.1_g000003
rosa_roxburghii	Rroxscaffold_3G00245000 Rroxscaffold_5G00361000
rosa_rugosa	Rorug02G0282700 Rorug04G0146200
rosa_samantha	Rh2AG335100 Rh4AG209200 Rh4BG206100 Rh4BG206300 Rh4CG220200 Rh4DG206900 Rh5AG248600
rosa_wichuraiana	Rw4G017720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	118, 200
AccI	GTMKAC	1 cut(s)	60
AccII	CGCG	1 cut(s)	124
AccIII	TCCGGA	2 cut(s)	42, 239
AciI	CCGC	4 cut(s)	51, 122, 161, 211
AcyI	GRCGYC	1 cut(s)	119
AfiI	CCNNNNNNNGG	1 cut(s)	210
AgsI	TTSAA	2 cut(s)	259, 292
AjnI	CCWGG	1 cut(s)	266
AluBI	AGCT	1 cut(s)	247
AluI	AGCT	1 cut(s)	247
Ama87I	CYCGRG	1 cut(s)	26
Aor13HI	TCCGGA	2 cut(s)	42, 239
AoxI	GGCC	3 cut(s)	7, 110, 264
AspLEI	GCGC	2 cut(s)	121, 177
AspS9I	GGNCC	3 cut(s)	22, 45, 142
AvaI	CYCGRG	1 cut(s)	26
AvaII	GGWCC	3 cut(s)	22, 45, 142
BanI	GGYRCC	2 cut(s)	118, 200
BciT130I	CCWGG	1 cut(s)	268
BfaI	CTAG	1 cut(s)	108
BfoI	RGCGCY	1 cut(s)	122
BglI	GCCNNNNNGGC	1 cut(s)	127
BisI	GCNGC	2 cut(s)	122, 161
BlsI	GCNGC	2 cut(s)	123, 162
Bme1390I	CCNGG	1 cut(s)	268
Bme18I	GGWCC	3 cut(s)	22, 45, 142
BmeT110I	CYCGRG	1 cut(s)	26
BmgT120I	GGNCC	3 cut(s)	22, 45, 142
BmiI	GGNNCC	4 cut(s)	73, 120, 144, 202
BmrFI	CCNGG	1 cut(s)	268
BpmI	CTGGAG	1 cut(s)	58
BsaHI	GRCGYC	1 cut(s)	119
BsaJI	CCNNGG	1 cut(s)	267
BsaWI	WCCGGW	2 cut(s)	42, 239
Bsc4I	CCNNNNNNNGG	1 cut(s)	210
BseAI	TCCGGA	2 cut(s)	42, 239
BseBI	CCWGG	1 cut(s)	268
BseDI	CCNNGG	1 cut(s)	267
BseGI	GGATG	1 cut(s)	231
BseLI	CCNNNNNNNGG	1 cut(s)	210
Bsh1236I	CGCG	1 cut(s)	124
BshFI	GGCC	3 cut(s)	9, 112, 266
BshNI	GGYRCC	2 cut(s)	118, 200
BsiHKCI	CYCGRG	1 cut(s)	26
BsiSI	CCGG	2 cut(s)	43, 240
BslFI	GGGAC	2 cut(s)	16, 128
BslI	CCNNNNNNNGG	1 cut(s)	210
BsmFI	GGGAC	2 cut(s)	16, 128
BsnI	GGCC	3 cut(s)	9, 112, 266
BsoBI	CYCGRG	1 cut(s)	26
Bsp13I	TCCGGA	2 cut(s)	42, 239
Bsp143I	GATC	1 cut(s)	66
BspACI	CCGC	4 cut(s)	51, 122, 161, 211
BspANI	GGCC	3 cut(s)	9, 112, 266
BspEI	TCCGGA	2 cut(s)	42, 239
BspFNI	CGCG	1 cut(s)	124
BspLI	GGNNCC	4 cut(s)	73, 120, 144, 202
BspT107I	GGYRCC	2 cut(s)	118, 200
BssECI	CCNNGG	1 cut(s)	267
BssMI	GATC	1 cut(s)	66
BssNI	GRCGYC	1 cut(s)	119
Bst2UI	CCWGG	1 cut(s)	268
Bst4CI	ACNGT	1 cut(s)	283
BstACI	GRCGYC	1 cut(s)	119
BstF5I	GGATG	1 cut(s)	231
BstFNI	CGCG	1 cut(s)	124
BstH2I	RGCGCY	1 cut(s)	122
BstHHI	GCGC	2 cut(s)	121, 177
BstKTI	GATC	1 cut(s)	69
BstMBI	GATC	1 cut(s)	66
BstMWI	GCNNNNNNNGC	2 cut(s)	118, 127
BstNI	CCWGG	1 cut(s)	268
BstSCI	CCNGG	1 cut(s)	266
BstUI	CGCG	1 cut(s)	124
BsuRI	GGCC	3 cut(s)	9, 112, 266
BtsCI	GGATG	1 cut(s)	231
CfoI	GCGC	2 cut(s)	121, 177
Cfr13I	GGNCC	3 cut(s)	22, 45, 142
CviJI	RGCY	7 cut(s)	9, 72, 100, 112, 130, 247, 266
CviKI_1	RGCY	7 cut(s)	9, 72, 100, 112, 130, 247, 266
DinI	GGCGCC	1 cut(s)	120
DpnI	GATC	1 cut(s)	68
DpnII	GATC	1 cut(s)	66
Eco147I	AGGCCT	3 cut(s)	9, 112, 266
Eco47I	GGWCC	3 cut(s)	22, 45, 142
Eco88I	CYCGRG	1 cut(s)	26
EcoRII	CCWGG	1 cut(s)	266
EgeI	GGCGCC	1 cut(s)	120
EheI	GGCGCC	1 cut(s)	120
FaiI	YATR	2 cut(s)	219, 221
FaqI	GGGAC	2 cut(s)	16, 128
FauI	CCCGC	1 cut(s)	204
FblI	GTMKAC	1 cut(s)	60
Fnu4HI	GCNGC	2 cut(s)	122, 161
FokI	GGATG	1 cut(s)	238
Fsp4HI	GCNGC	2 cut(s)	122, 161
FspBI	CTAG	1 cut(s)	108
GlaI	GCGC	2 cut(s)	120, 176
GluI	GCNGC	2 cut(s)	122, 161
GsuI	CTGGAG	1 cut(s)	58
HaeII	RGCGCY	1 cut(s)	122
HaeIII	GGCC	3 cut(s)	9, 112, 266
HapII	CCGG	2 cut(s)	43, 240
HhaI	GCGC	2 cut(s)	121, 177
Hin1I	GRCGYC	1 cut(s)	119
Hin6I	GCGC	2 cut(s)	119, 175
HinP1I	GCGC	2 cut(s)	119, 175
HincII	GTYRAC	1 cut(s)	61
HindII	GTYRAC	1 cut(s)	61
HinfI	GANTC	6 cut(s)	29, 54, 93, 155, 229, 236
HpaII	CCGG	2 cut(s)	43, 240
Hpy166II	GTNNAC	1 cut(s)	61
Hpy188III	TCNNGA	4 cut(s)	43, 90, 233, 240
Hpy8I	GTNNAC	1 cut(s)	61
Hpy99I	CGWCG	2 cut(s)	17, 62
HpyAV	CCTTC	2 cut(s)	144, 214
HpyCH4III	ACNGT	1 cut(s)	283
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	2 cut(s)	118, 127
Hsp92I	GRCGYC	1 cut(s)	119
HspAI	GCGC	2 cut(s)	119, 175
KasI	GGCGCC	1 cut(s)	118
Kpn2I	TCCGGA	2 cut(s)	42, 239
Kzo9I	GATC	1 cut(s)	66
LmnI	GCTCC	1 cut(s)	77
LpnPI	CCDG	9 cut(s)	56, 61, 88, 101, 183, 248, 253, 253, 280
MaeI	CTAG	1 cut(s)	108
MalI	GATC	1 cut(s)	68
MboI	GATC	1 cut(s)	66
MfeI	CAATTG	1 cut(s)	292
MluCI	AATT	1 cut(s)	292
Mly113I	GGCGCC	1 cut(s)	119
MlyI	GAGTC	3 cut(s)	38, 48, 149
MnlI	CCTC	3 cut(s)	20, 35, 123
MroI	TCCGGA	2 cut(s)	42, 239
MspA1I	CMGCKG	1 cut(s)	51
MspI	CCGG	2 cut(s)	43, 240
MspR9I	CCNGG	1 cut(s)	268
MunI	CAATTG	1 cut(s)	292
MvaI	CCWGG	1 cut(s)	268
MvnI	CGCG	1 cut(s)	124
MwoI	GCNNNNNNNGC	2 cut(s)	118, 127
NarI	GGCGCC	1 cut(s)	119
NdeII	GATC	1 cut(s)	66
NlaIV	GGNNCC	4 cut(s)	73, 120, 144, 202
PaeR7I	CTCGAG	1 cut(s)	26
PceI	AGGCCT	3 cut(s)	9, 112, 266
PfeI	GAWTC	3 cut(s)	93, 229, 236
PkrI	GCNGC	2 cut(s)	123, 162
PleI	GAGTC	3 cut(s)	37, 48, 149
PluTI	GGCGCC	1 cut(s)	122
PpsI	GAGTC	3 cut(s)	37, 48, 149
Psp6I	CCWGG	1 cut(s)	266
PspGI	CCWGG	1 cut(s)	266
PspN4I	GGNNCC	4 cut(s)	73, 120, 144, 202
PspPI	GGNCC	3 cut(s)	22, 45, 142
PspXI	VCTCGAGB	1 cut(s)	26
SalI	GTCGAC	1 cut(s)	59
SatI	GCNGC	2 cut(s)	122, 161
Sau3AI	GATC	1 cut(s)	66
Sau96I	GGNCC	3 cut(s)	22, 45, 142
SchI	GAGTC	3 cut(s)	38, 48, 149
ScrFI	CCNGG	1 cut(s)	268
SetI	ASST	1 cut(s)	249
SfoI	GGCGCC	1 cut(s)	120
Sfr274I	CTCGAG	1 cut(s)	26
SinI	GGWCC	3 cut(s)	22, 45, 142
SlaI	CTCGAG	1 cut(s)	26
SmlI	CTYRAG	1 cut(s)	26
SmoI	CTYRAG	1 cut(s)	26
Sse9I	AATT	1 cut(s)	292
SseBI	AGGCCT	3 cut(s)	9, 112, 266
SsiI	CCGC	4 cut(s)	51, 122, 161, 211
SspDI	GGCGCC	1 cut(s)	118
SspMI	CTAG	1 cut(s)	108
StuI	AGGCCT	3 cut(s)	9, 112, 266
StyD4I	CCNGG	1 cut(s)	266
TaaI	ACNGT	1 cut(s)	283
TaqI	TCGA	4 cut(s)	27, 60, 89, 234
TasI	AATT	1 cut(s)	292
TauI	GCSGC	2 cut(s)	124, 163
TfiI	GAWTC	3 cut(s)	93, 229, 236
TspDTI	ATGAA	1 cut(s)	242
VpaK11BI	GGWCC	3 cut(s)	22, 45, 142
XhoI	CTCGAG	1 cut(s)	26
XmiI	GTMKAC	1 cut(s)	60
XspI	CTAG	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.