Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001643.1

Orthogroup ID

OG0006451

Physical Location & Seq

Genomic Coordinates Forward (+)

12851 .. 18661

Gene Structure 5811 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001643.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

atgcaaggcctcatcggcttggtcctcgagtcccttgacttccgaatcagaattttctttaagcgaccggcggcgcgtgggcttcctccagtggtccccgatgacgaggcgcctccaattctgtggcgcaagggcgagttgattggatctggtgccttcgggcgggtatatatagggatgaacctcgattccgaagagcttattgtcgttaaacaggctgagaaaagaaggcaaaaggaagagctccgaaaagagagagaggaagtgggacgcaaagctgcacttgagaaggctactgcaagcactgacggacgcacagaggttgatgatggagtcggactccgcgacggatcgaaggaacttgaggagcgagcggaggtcgcagactcggaggaactaaaactcggcgaggaccagatagccgacggcggtcgccggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006996 GO:0007010 GO:0007017 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009893 GO:0009987 GO:0010562 GO:0010604 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0030865 GO:0031098 GO:0031122 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043412 GO:0043549 GO:0043622 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0046777 GO:0048046 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0080090 GO:0097435 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Pkinase

Protein Analysis

146

Amino Acids

16.24

Weight (kDa)

5.05

Isoelectric Point (pI)

51.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006451)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06030
fragaria_vesca	FvH4_4g14910 FvH4_4g14910
malus_domestica	MD13G1186500.v1.1 MD16G1187200.v1.1
prunus_persica	Prupe.1G154200_v2.0.a1 Prupe.1G154200_v2.0.a1
pyrus_communis	pycom13g16140 pycom16g15720
rosa_chinensis	RchiOBHm_Chr4g0417171
rosa_laevigata	RLG00000007924
rosa_multiflora	Rmu_co8320689.1_g000001 Rmu_sc0000959.1_g000002 Rmu_sc0001643.1_g000003
rosa_roxburghii	Rroxscaffold_3G00245000 Rroxscaffold_5G00361000
rosa_rugosa	Rorug02G0282700 Rorug04G0146200
rosa_samantha	Rh2AG335100 Rh4AG209200 Rh4BG206100 Rh4BG206300 Rh4CG220200 Rh4DG206900 Rh5AG248600
rosa_wichuraiana	Rw4G017720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	109, 152
AccBSI	CCGCTC	1 cut(s)	374
AccII	CGCG	2 cut(s)	76, 345
AciI	CCGC	5 cut(s)	71, 163, 343, 374, 429
AclWI	GGATC	2 cut(s)	154, 358
AcsI	RAATTY	1 cut(s)	51
AcyI	GRCGYC	1 cut(s)	110
AfiI	CCNNNNNNNGG	1 cut(s)	162
AloI	GAACNNNNNNTCC	2 cut(s)	173, 205
AluBI	AGCT	3 cut(s)	199, 244, 278
AluI	AGCT	3 cut(s)	199, 244, 278
Alw21I	GWGCWC	1 cut(s)	246
AlwI	GGATC	2 cut(s)	154, 358
Ama87I	CYCGRG	1 cut(s)	26
AoxI	GGCC	1 cut(s)	7
ApeKI	GCWGC	1 cut(s)	278
ApoI	RAATTY	1 cut(s)	51
AspLEI	GCGC	3 cut(s)	76, 112, 129
AspS9I	GGNCC	3 cut(s)	22, 94, 412
AvaI	CYCGRG	1 cut(s)	26
AvaII	GGWCC	3 cut(s)	22, 94, 412
BanI	GGYRCC	2 cut(s)	109, 152
BanII	GRGCYC	1 cut(s)	246
Bbv12I	GWGCWC	1 cut(s)	246
BbvI	GCAGC	1 cut(s)	265
BccI	CCATC	1 cut(s)	323
BfoI	RGCGCY	1 cut(s)	113
BglI	GCCNNNNNGGC	1 cut(s)	15
BisI	GCNGC	2 cut(s)	72, 279
BlsI	GCNGC	2 cut(s)	73, 280
Bme18I	GGWCC	3 cut(s)	22, 94, 412
BmeT110I	CYCGRG	1 cut(s)	26
BmgT120I	GGNCC	3 cut(s)	22, 94, 412
BmiI	GGNNCC	3 cut(s)	96, 111, 154
BoxI	GACNNNNGTC	1 cut(s)	429
BplI	GAGNNNNNCTC	2 cut(s)	324, 356
BpmI	CTGGAG	1 cut(s)	72
BpuEI	CTTGAG	2 cut(s)	305, 383
BsaHI	GRCGYC	1 cut(s)	110
Bsc4I	CCNNNNNNNGG	1 cut(s)	162
Bse118I	RCCGGY	2 cut(s)	67, 435
Bse1I	ACTGG	1 cut(s)	89
BseGI	GGATG	1 cut(s)	183
BseLI	CCNNNNNNNGG	1 cut(s)	162
BseMII	CTCAG	1 cut(s)	210
BseNI	ACTGG	1 cut(s)	89
BseRI	GAGGAG	1 cut(s)	380
BseXI	GCAGC	1 cut(s)	265
BsgI	GTGCAG	1 cut(s)	264
Bsh1236I	CGCG	2 cut(s)	76, 345
Bsh1285I	CGRYCG	2 cut(s)	68, 433
BshFI	GGCC	1 cut(s)	9
BshNI	GGYRCC	2 cut(s)	109, 152
BsiEI	CGRYCG	2 cut(s)	68, 433
BsiHKAI	GWGCWC	1 cut(s)	246
BsiHKCI	CYCGRG	1 cut(s)	26
BsiSI	CCGG	2 cut(s)	68, 436
BslFI	GGGAC	3 cut(s)	16, 80, 282
BslI	CCNNNNNNNGG	1 cut(s)	162
BsmFI	GGGAC	3 cut(s)	16, 80, 282
BsnI	GGCC	1 cut(s)	9
BsoBI	CYCGRG	1 cut(s)	26
Bsp1286I	GDGCHC	1 cut(s)	246
Bsp143I	GATC	2 cut(s)	146, 350
BspACI	CCGC	5 cut(s)	71, 163, 343, 374, 429
BspANI	GGCC	1 cut(s)	9
BspCNI	CTCAG	1 cut(s)	211
BspFNI	CGCG	2 cut(s)	76, 345
BspLI	GGNNCC	3 cut(s)	96, 111, 154
BspPI	GGATC	2 cut(s)	154, 358
BspQI	GCTCTTC	2 cut(s)	189, 234
BspT107I	GGYRCC	2 cut(s)	109, 152
BsrBI	CCGCTC	1 cut(s)	374
BsrFI	RCCGGY	2 cut(s)	67, 435
BsrI	ACTGG	1 cut(s)	89
BssAI	RCCGGY	2 cut(s)	67, 435
BssMI	GATC	2 cut(s)	146, 350
BssNI	GRCGYC	1 cut(s)	110
Bst6I	CTCTTC	2 cut(s)	189, 234
BstACI	GRCGYC	1 cut(s)	110
BstC8I	GCNNGC	2 cut(s)	301, 372
BstDEI	CTNAG	1 cut(s)	219
BstF5I	GGATG	1 cut(s)	183
BstFNI	CGCG	2 cut(s)	76, 345
BstH2I	RGCGCY	1 cut(s)	113
BstHHI	GCGC	3 cut(s)	76, 112, 129
BstKTI	GATC	2 cut(s)	149, 353
BstMBI	GATC	2 cut(s)	146, 350
BstMCI	CGRYCG	2 cut(s)	68, 433
BstMWI	GCNNNNNNNGC	2 cut(s)	15, 380
BstPAI	GACNNNNGTC	1 cut(s)	429
BstUI	CGCG	2 cut(s)	76, 345
BstV1I	GCAGC	1 cut(s)	265
BstX2I	RGATCY	1 cut(s)	146
BstXI	CCANNNNNNTGG	1 cut(s)	123
BstYI	RGATCY	1 cut(s)	146
BsuRI	GGCC	1 cut(s)	9
BtsCI	GGATG	1 cut(s)	183
BtsIMutI	CAGTG	2 cut(s)	96, 303
Cac8I	GCNNGC	2 cut(s)	301, 372
CfoI	GCGC	3 cut(s)	76, 112, 129
Cfr10I	RCCGGY	2 cut(s)	67, 435
Cfr13I	GGNCC	3 cut(s)	22, 94, 412
CseI	GACGC	2 cut(s)	279, 321
CviJI	RGCY	9 cut(s)	9, 18, 82, 199, 218, 244, 278, 293, 422
CviKI_1	RGCY	9 cut(s)	9, 18, 82, 199, 218, 244, 278, 293, 422
DdeI	CTNAG	1 cut(s)	219
DinI	GGCGCC	1 cut(s)	111
DpnI	GATC	2 cut(s)	148, 352
DpnII	GATC	2 cut(s)	146, 350
Eam1104I	CTCTTC	2 cut(s)	189, 234
EarI	CTCTTC	2 cut(s)	189, 234
Ecl136II	GAGCTC	1 cut(s)	244
Eco147I	AGGCCT	1 cut(s)	9
Eco24I	GRGCYC	1 cut(s)	246
Eco47I	GGWCC	3 cut(s)	22, 94, 412
Eco53kI	GAGCTC	1 cut(s)	244
Eco88I	CYCGRG	1 cut(s)	26
EcoICRI	GAGCTC	1 cut(s)	244
EcoT38I	GRGCYC	1 cut(s)	246
EgeI	GGCGCC	1 cut(s)	111
EheI	GGCGCC	1 cut(s)	111
FaiI	YATR	3 cut(s)	169, 171, 173
FalI	AAGNNNNNCTT	2 cut(s)	267, 299
FaqI	GGGAC	3 cut(s)	16, 80, 282
FauI	CCCGC	1 cut(s)	156
Fnu4HI	GCNGC	2 cut(s)	72, 279
FokI	GGATG	1 cut(s)	190
FriOI	GRGCYC	1 cut(s)	246
Fsp4HI	GCNGC	2 cut(s)	72, 279
GlaI	GCGC	3 cut(s)	75, 111, 128
GluI	GCNGC	2 cut(s)	72, 279
GsuI	CTGGAG	1 cut(s)	72
HaeII	RGCGCY	1 cut(s)	113
HaeIII	GGCC	1 cut(s)	9
HapII	CCGG	2 cut(s)	68, 436
HgaI	GACGC	2 cut(s)	279, 321
HhaI	GCGC	3 cut(s)	76, 112, 129
Hin1I	GRCGYC	1 cut(s)	110
Hin6I	GCGC	3 cut(s)	74, 110, 127
HinP1I	GCGC	3 cut(s)	74, 110, 127
HinfI	GANTC	6 cut(s)	29, 45, 188, 333, 339, 386
HpaII	CCGG	2 cut(s)	68, 436
Hpy188I	TCNGA	6 cut(s)	44, 50, 193, 248, 338, 391
Hpy99I	CGWCG	2 cut(s)	350, 428
HpyAV	CCTTC	4 cut(s)	166, 222, 283, 349
HpyCH4V	TGCA	3 cut(s)	4, 281, 299
HpyF10VI	GCNNNNNNNGC	2 cut(s)	15, 380
HpyF3I	CTNAG	1 cut(s)	219
Hsp92I	GRCGYC	1 cut(s)	110
HspAI	GCGC	3 cut(s)	74, 110, 127
KasI	GGCGCC	1 cut(s)	109
Kzo9I	GATC	2 cut(s)	146, 350
LguI	GCTCTTC	2 cut(s)	189, 234
LmnI	GCTCC	2 cut(s)	249, 367
LpnPI	CCDG	5 cut(s)	81, 102, 135, 200, 428
Lsp1109I	GCAGC	1 cut(s)	265
MalI	GATC	2 cut(s)	148, 352
MbiI	CCGCTC	1 cut(s)	374
MboI	GATC	2 cut(s)	146, 350
MboII	GAAGA	2 cut(s)	206, 251
MflI	RGATCY	1 cut(s)	146
MhlI	GDGCHC	1 cut(s)	246
MluCI	AATT	2 cut(s)	51, 117
Mly113I	GGCGCC	1 cut(s)	110
MlyI	GAGTC	4 cut(s)	38, 333, 342, 380
MmeI	TCCRAC	1 cut(s)	316
MseI	TTAA	2 cut(s)	60, 210
MspI	CCGG	2 cut(s)	68, 436
MvnI	CGCG	2 cut(s)	76, 345
MwoI	GCNNNNNNNGC	2 cut(s)	15, 380
NarI	GGCGCC	1 cut(s)	110
NdeII	GATC	2 cut(s)	146, 350
NlaIV	GGNNCC	3 cut(s)	96, 111, 154
NmeAIII	GCCGAG	1 cut(s)	384
PaeR7I	CTCGAG	1 cut(s)	26
PceI	AGGCCT	1 cut(s)	9
PciSI	GCTCTTC	2 cut(s)	189, 234
PcsI	WCGNNNNNNNCGW	1 cut(s)	342
PfeI	GAWTC	2 cut(s)	45, 188
PkrI	GCNGC	2 cut(s)	73, 280
PleI	GAGTC	4 cut(s)	37, 333, 341, 380
PluTI	GGCGCC	1 cut(s)	113
PpsI	GAGTC	4 cut(s)	37, 333, 341, 380
PshAI	GACNNNNGTC	1 cut(s)	429
Psp124BI	GAGCTC	1 cut(s)	246
PspN4I	GGNNCC	3 cut(s)	96, 111, 154
PspPI	GGNCC	3 cut(s)	22, 94, 412
PspXI	VCTCGAGB	1 cut(s)	26
PsuI	RGATCY	1 cut(s)	146
SacI	GAGCTC	1 cut(s)	246
SapI	GCTCTTC	2 cut(s)	189, 234
SaqAI	TTAA	2 cut(s)	60, 210
SatI	GCNGC	2 cut(s)	72, 279
Sau3AI	GATC	2 cut(s)	146, 350
Sau96I	GGNCC	3 cut(s)	22, 94, 412
SchI	GAGTC	4 cut(s)	38, 333, 342, 380
SduI	GDGCHC	1 cut(s)	246
SetI	ASST	6 cut(s)	186, 201, 246, 280, 324, 381
SfoI	GGCGCC	1 cut(s)	111
Sfr274I	CTCGAG	1 cut(s)	26
SgrAI	CRCCGGYG	1 cut(s)	435
SinI	GGWCC	3 cut(s)	22, 94, 412
SlaI	CTCGAG	1 cut(s)	26
SmlI	CTYRAG	3 cut(s)	26, 284, 362
SmoI	CTYRAG	3 cut(s)	26, 284, 362
Sse9I	AATT	2 cut(s)	51, 117
SseBI	AGGCCT	1 cut(s)	9
SsiI	CCGC	5 cut(s)	71, 163, 343, 374, 429
SspDI	GGCGCC	1 cut(s)	109
SstI	GAGCTC	1 cut(s)	246
StuI	AGGCCT	1 cut(s)	9
TaqI	TCGA	3 cut(s)	27, 186, 353
TasI	AATT	2 cut(s)	51, 117
TauI	GCSGC	1 cut(s)	74
TfiI	GAWTC	2 cut(s)	45, 188
Tru1I	TTAA	2 cut(s)	60, 210
Tru9I	TTAA	2 cut(s)	60, 210
TscAI	CASTG	2 cut(s)	96, 310
TseI	GCWGC	1 cut(s)	278
TspDTI	ATGAA	1 cut(s)	194
TspGWI	ACGGA	2 cut(s)	324, 363
TspRI	CASTG	2 cut(s)	96, 310
VpaK11BI	GGWCC	3 cut(s)	22, 94, 412
XapI	RAATTY	1 cut(s)	51
XhoI	CTCGAG	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.