Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0006451

Physical Location & Seq

Genomic Coordinates Reverse (-)

37796112 .. 37808297

Gene Structure 12186 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00245000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGCGGTTATGGGTGGTGTTCGGTGTGGATCTGATCTAAGCGTTGGTTGCAACATTGGGCCATCGGTTGAAGTTGCACTTACTGTTTGTGCTGCTAGCACCTCTCTCAGACCGCTCCACAAAACCCTCGCCACCACCTCCACCAGGTGGCGACGCTCCGATTTACCATACCTACCACCACTCTCTCAAATCGTTCTCACTCTCTGTTTTGCGGACCAAATGAAACTCAAACAGCAGCAGCAGCAGCAAGCATCGCACCTCTCTTCCTCTCACAAATCTCGGAGAACTCAAATGCAAAAAATATTTAGATTAGTTCGCCGATCACTCATGTTTCGACCACTACCAAACATCGATGACTCCCCCGTAACCATAGTCAACAAGATCAACGCCTCGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

132

Amino Acids

14.63

Weight (kDa)

10.62

Isoelectric Point (pI)

73.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006451)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06030
fragaria_vesca	FvH4_4g14910 FvH4_4g14910
malus_domestica	MD13G1186500.v1.1 MD16G1187200.v1.1
prunus_persica	Prupe.1G154200_v2.0.a1 Prupe.1G154200_v2.0.a1
pyrus_communis	pycom13g16140 pycom16g15720
rosa_chinensis	RchiOBHm_Chr4g0417171
rosa_laevigata	RLG00000007924
rosa_multiflora	Rmu_co8320689.1_g000001 Rmu_sc0000959.1_g000002 Rmu_sc0001643.1_g000003
rosa_roxburghii	Rroxscaffold_3G00245000 Rroxscaffold_5G00361000
rosa_rugosa	Rorug02G0282700 Rorug04G0146200
rosa_samantha	Rh2AG335100 Rh4AG209200 Rh4BG206100 Rh4BG206300 Rh4CG220200 Rh4DG206900 Rh5AG248600
rosa_wichuraiana	Rw4G017720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	147
AccBSI	CCGCTC	1 cut(s)	115
AciI	CCGC	3 cut(s)	5, 113, 212
AclWI	GGATC	1 cut(s)	37
AdeI	CACNNNGTG	1 cut(s)	147
AfiI	CCNNNNNNNGG	2 cut(s)	144, 147
AgsI	TTSAA	1 cut(s)	71
AjnI	CCWGG	1 cut(s)	143
AlwI	GGATC	1 cut(s)	37
AoxI	GGCC	1 cut(s)	59
ApeKI	GCWGC	5 cut(s)	92, 235, 238, 241, 244
AspS9I	GGNCC	2 cut(s)	59, 214
AsuNHI	GCTAGC	1 cut(s)	95
AvaII	GGWCC	1 cut(s)	214
BbvI	GCAGC	5 cut(s)	79, 247, 250, 253, 256
BccI	CCATC	1 cut(s)	70
BciT130I	CCWGG	1 cut(s)	145
BfaI	CTAG	1 cut(s)	96
BisI	GCNGC	5 cut(s)	93, 236, 239, 242, 245
BlsI	GCNGC	5 cut(s)	94, 237, 240, 243, 246
Bme1390I	CCNGG	1 cut(s)	145
Bme18I	GGWCC	1 cut(s)	214
BmgT120I	GGNCC	2 cut(s)	59, 214
BmrFI	CCNGG	1 cut(s)	145
BmsI	GCATC	1 cut(s)	260
BmtI	GCTAGC	1 cut(s)	99
Bsa29I	ATCGAT	1 cut(s)	351
Bsc4I	CCNNNNNNNGG	2 cut(s)	144, 147
BseBI	CCWGG	1 cut(s)	145
BseCI	ATCGAT	1 cut(s)	351
BseLI	CCNNNNNNNGG	2 cut(s)	144, 147
BseMII	CTCAG	1 cut(s)	121
BseXI	GCAGC	5 cut(s)	79, 247, 250, 253, 256
BshFI	GGCC	1 cut(s)	61
BshVI	ATCGAT	1 cut(s)	351
BslI	CCNNNNNNNGG	2 cut(s)	144, 147
BsnI	GGCC	1 cut(s)	61
Bsp143I	GATC	4 cut(s)	29, 34, 320, 381
BspACI	CCGC	3 cut(s)	5, 113, 212
BspANI	GGCC	1 cut(s)	61
BspCNI	CTCAG	1 cut(s)	120
BspDI	ATCGAT	1 cut(s)	351
BspOI	GCTAGC	1 cut(s)	99
BspPI	GGATC	1 cut(s)	37
BsrBI	CCGCTC	1 cut(s)	115
BssMI	GATC	4 cut(s)	29, 34, 320, 381
Bst2UI	CCWGG	1 cut(s)	145
Bst4CI	ACNGT	1 cut(s)	85
Bst6I	CTCTTC	1 cut(s)	268
BstC8I	GCNNGC	2 cut(s)	97, 249
BstDEI	CTNAG	2 cut(s)	38, 107
BstENI	CCTNNNNNAGG	1 cut(s)	142
BstKTI	GATC	4 cut(s)	32, 37, 323, 384
BstMBI	GATC	4 cut(s)	29, 34, 320, 381
BstMWI	GCNNNNNNNGC	4 cut(s)	48, 241, 244, 253
BstNI	CCWGG	1 cut(s)	145
BstSCI	CCNGG	1 cut(s)	143
BstV1I	GCAGC	5 cut(s)	79, 247, 250, 253, 256
BstX2I	RGATCY	1 cut(s)	29
BstYI	RGATCY	1 cut(s)	29
Bsu15I	ATCGAT	1 cut(s)	351
BsuRI	GGCC	1 cut(s)	61
BsuTUI	ATCGAT	1 cut(s)	351
BtgZI	GCGATG	1 cut(s)	237
Cac8I	GCNNGC	2 cut(s)	97, 249
Cfr13I	GGNCC	2 cut(s)	59, 214
ClaI	ATCGAT	1 cut(s)	351
CseI	GACGC	1 cut(s)	162
CsiI	ACCWGGT	1 cut(s)	143
CviAII	CATG	1 cut(s)	328
CviJI	RGCY	1 cut(s)	61
CviKI_1	RGCY	1 cut(s)	61
DdeI	CTNAG	2 cut(s)	38, 107
DpnI	GATC	4 cut(s)	31, 36, 322, 383
DpnII	GATC	4 cut(s)	29, 34, 320, 381
DraIII	CACNNNGTG	1 cut(s)	147
Eam1104I	CTCTTC	1 cut(s)	268
EarI	CTCTTC	1 cut(s)	268
Eco47I	GGWCC	1 cut(s)	214
EcoNI	CCTNNNNNAGG	1 cut(s)	142
EcoRII	CCWGG	1 cut(s)	143
FaeI	CATG	1 cut(s)	331
FaiI	YATR	4 cut(s)	11, 169, 329, 371
FalI	AAGNNNNNCTT	2 cut(s)	63, 95
FatI	CATG	1 cut(s)	327
Fnu4HI	GCNGC	5 cut(s)	93, 236, 239, 242, 245
Fsp4HI	GCNGC	5 cut(s)	93, 236, 239, 242, 245
FspBI	CTAG	1 cut(s)	96
GluI	GCNGC	5 cut(s)	93, 236, 239, 242, 245
HaeIII	GGCC	1 cut(s)	61
HgaI	GACGC	1 cut(s)	162
Hin1II	CATG	1 cut(s)	331
HincII	GTYRAC	1 cut(s)	376
HindII	GTYRAC	1 cut(s)	376
HinfI	GANTC	1 cut(s)	356
Hpy166II	GTNNAC	1 cut(s)	376
Hpy188I	TCNGA	4 cut(s)	34, 110, 160, 282
Hpy8I	GTNNAC	1 cut(s)	376
Hpy99I	CGWCG	1 cut(s)	156
HpyCH4III	ACNGT	1 cut(s)	85
HpyCH4V	TGCA	3 cut(s)	51, 77, 295
HpyF10VI	GCNNNNNNNGC	4 cut(s)	48, 241, 244, 253
HpyF3I	CTNAG	2 cut(s)	38, 107
Hsp92II	CATG	1 cut(s)	331
Kzo9I	GATC	4 cut(s)	29, 34, 320, 381
LmnI	GCTCC	2 cut(s)	120, 161
LpnPI	CCDG	2 cut(s)	130, 157
Lsp1109I	GCAGC	5 cut(s)	79, 247, 250, 253, 256
LweI	GCATC	1 cut(s)	260
MabI	ACCWGGT	1 cut(s)	143
MaeI	CTAG	1 cut(s)	96
MaeIII	GTNAC	1 cut(s)	364
MalI	GATC	4 cut(s)	31, 36, 322, 383
MbiI	CCGCTC	1 cut(s)	115
MboI	GATC	4 cut(s)	29, 34, 320, 381
MboII	GAAGA	1 cut(s)	255
MflI	RGATCY	1 cut(s)	29
MlyI	GAGTC	1 cut(s)	350
MnlI	CCTC	5 cut(s)	112, 137, 148, 269, 277
MspR9I	CCNGG	1 cut(s)	145
MvaI	CCWGG	1 cut(s)	145
MwoI	GCNNNNNNNGC	4 cut(s)	48, 241, 244, 253
NdeII	GATC	4 cut(s)	29, 34, 320, 381
NheI	GCTAGC	1 cut(s)	95
NlaIII	CATG	1 cut(s)	331
PflMI	CCANNNNNTGG	1 cut(s)	147
PkrI	GCNGC	5 cut(s)	94, 237, 240, 243, 246
PleI	GAGTC	1 cut(s)	350
PpsI	GAGTC	1 cut(s)	350
Psp6I	CCWGG	1 cut(s)	143
PspGI	CCWGG	1 cut(s)	143
PspPI	GGNCC	2 cut(s)	59, 214
PsuI	RGATCY	1 cut(s)	29
SatI	GCNGC	5 cut(s)	93, 236, 239, 242, 245
Sau3AI	GATC	4 cut(s)	29, 34, 320, 381
Sau96I	GGNCC	2 cut(s)	59, 214
SchI	GAGTC	1 cut(s)	350
ScrFI	CCNGG	1 cut(s)	145
SetI	ASST	5 cut(s)	104, 140, 149, 174, 261
SexAI	ACCWGGT	1 cut(s)	143
SfaNI	GCATC	1 cut(s)	260
SgeI	CNNG	9 cut(s)	108, 140, 156, 157, 260, 291, 340, 374, 391
SinI	GGWCC	1 cut(s)	214
SsiI	CCGC	3 cut(s)	5, 113, 212
SspI	AATATT	1 cut(s)	303
SspMI	CTAG	1 cut(s)	96
StyD4I	CCNGG	1 cut(s)	143
TaaI	ACNGT	1 cut(s)	85
TaqI	TCGA	3 cut(s)	334, 351, 392
TseI	GCWGC	5 cut(s)	92, 235, 238, 241, 244
TspDTI	ATGAA	1 cut(s)	236
Van91I	CCANNNNNTGG	1 cut(s)	147
VpaK11BI	GGWCC	1 cut(s)	214
XagI	CCTNNNNNAGG	1 cut(s)	142
XspI	CTAG	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.