Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0006451

Physical Location & Seq

Genomic Coordinates Reverse (-)

48559083 .. 48559467

Gene Structure 385 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG335100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGCAAGGCCTCGTCGGCTTGGTCCGCGAGTCCCTTGACTTCCGAATCATACTTTTCTTTAAGCCACCGGCGCCGCGTGGGTTTCGTACAGTGGTCCCTGATGACGAAGCACCACTGTGGCTCAAGGGTGAGTTGATTGGGTTTGGTGCCTTCGGGCGGGTCTATATAGGGATGAACCTCGATTCCGGAGAGCTTATTGTCGTTAAACAGGTTTGGATTGCTGCAAGTAGTGCTTCAAAGGAGAAGACACAGACATGTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006996 GO:0007010 GO:0007017 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009893 GO:0009987 GO:0010562 GO:0010604 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0030865 GO:0031098 GO:0031122 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043412 GO:0043549 GO:0043622 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0046777 GO:0048046 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0080090 GO:0097435 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Pkinase

Protein Analysis

87

Amino Acids

9.63

Weight (kDa)

7.89

Isoelectric Point (pI)

20.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006451)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06030
fragaria_vesca	FvH4_4g14910 FvH4_4g14910
malus_domestica	MD13G1186500.v1.1 MD16G1187200.v1.1
prunus_persica	Prupe.1G154200_v2.0.a1 Prupe.1G154200_v2.0.a1
pyrus_communis	pycom13g16140 pycom16g15720
rosa_chinensis	RchiOBHm_Chr4g0417171
rosa_laevigata	RLG00000007924
rosa_multiflora	Rmu_co8320689.1_g000001 Rmu_sc0000959.1_g000002 Rmu_sc0001643.1_g000003
rosa_roxburghii	Rroxscaffold_3G00245000 Rroxscaffold_5G00361000
rosa_rugosa	Rorug02G0282700 Rorug04G0146200
rosa_samantha	Rh2AG335100 Rh4AG209200 Rh4BG206100 Rh4BG206300 Rh4CG220200 Rh4DG206900 Rh5AG248600
rosa_wichuraiana	Rw4G017720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	70, 146
AccII	CGCG	2 cut(s)	27, 76
AccIII	TCCGGA	1 cut(s)	185
AciI	CCGC	3 cut(s)	25, 74, 157
AcyI	GRCGYC	1 cut(s)	71
AfaI	GTAC	1 cut(s)	88
AfiI	CCNNNNNNNGG	1 cut(s)	156
AflIII	ACRYGT	1 cut(s)	254
AgsI	TTSAA	1 cut(s)	237
AleI	CACNNNNGTG	1 cut(s)	115
AloI	GAACNNNNNNTCC	2 cut(s)	167, 199
AluBI	AGCT	1 cut(s)	193
AluI	AGCT	1 cut(s)	193
Aor13HI	TCCGGA	1 cut(s)	185
AoxI	GGCC	1 cut(s)	7
ApeKI	GCWGC	1 cut(s)	221
AspLEI	GCGC	1 cut(s)	73
AspS9I	GGNCC	2 cut(s)	22, 94
AsuHPI	GGTGA	1 cut(s)	140
AvaII	GGWCC	2 cut(s)	22, 94
BanI	GGYRCC	2 cut(s)	70, 146
BbsI	GAAGAC	1 cut(s)	251
BbvI	GCAGC	1 cut(s)	208
BfoI	RGCGCY	1 cut(s)	74
BglI	GCCNNNNNGGC	1 cut(s)	15
BisI	GCNGC	2 cut(s)	74, 222
BlsI	GCNGC	2 cut(s)	75, 223
Bme18I	GGWCC	2 cut(s)	22, 94
BmgT120I	GGNCC	2 cut(s)	22, 94
BmiI	GGNNCC	3 cut(s)	72, 96, 148
BpiI	GAAGAC	1 cut(s)	251
BpuEI	CTTGAG	1 cut(s)	107
BsaHI	GRCGYC	1 cut(s)	71
BsaWI	WCCGGW	1 cut(s)	185
Bsc4I	CCNNNNNNNGG	1 cut(s)	156
Bse118I	RCCGGY	1 cut(s)	67
BseAI	TCCGGA	1 cut(s)	185
BseGI	GGATG	1 cut(s)	177
BseLI	CCNNNNNNNGG	1 cut(s)	156
BseXI	GCAGC	1 cut(s)	208
Bsh1236I	CGCG	2 cut(s)	27, 76
BshFI	GGCC	1 cut(s)	9
BshNI	GGYRCC	2 cut(s)	70, 146
BsiSI	CCGG	2 cut(s)	68, 186
BslFI	GGGAC	2 cut(s)	16, 80
BslI	CCNNNNNNNGG	1 cut(s)	156
BsmFI	GGGAC	2 cut(s)	16, 80
BsnI	GGCC	1 cut(s)	9
Bsp13I	TCCGGA	1 cut(s)	185
BspACI	CCGC	3 cut(s)	25, 74, 157
BspANI	GGCC	1 cut(s)	9
BspEI	TCCGGA	1 cut(s)	185
BspFNI	CGCG	2 cut(s)	27, 76
BspLI	GGNNCC	3 cut(s)	72, 96, 148
BspT107I	GGYRCC	2 cut(s)	70, 146
BsrFI	RCCGGY	1 cut(s)	67
BssAI	RCCGGY	1 cut(s)	67
BssNI	GRCGYC	1 cut(s)	71
Bst4CI	ACNGT	2 cut(s)	91, 117
BstACI	GRCGYC	1 cut(s)	71
BstAPI	GCANNNNNTGC	1 cut(s)	230
BstF5I	GGATG	1 cut(s)	177
BstFNI	CGCG	2 cut(s)	27, 76
BstH2I	RGCGCY	1 cut(s)	74
BstHHI	GCGC	1 cut(s)	73
BstMWI	GCNNNNNNNGC	4 cut(s)	15, 24, 70, 230
BstNSI	RCATGY	1 cut(s)	258
BstUI	CGCG	2 cut(s)	27, 76
BstV1I	GCAGC	1 cut(s)	208
BstV2I	GAAGAC	1 cut(s)	251
BsuRI	GGCC	1 cut(s)	9
BtsCI	GGATG	1 cut(s)	177
BtsIMutI	CAGTG	2 cut(s)	96, 113
CfoI	GCGC	1 cut(s)	73
Cfr10I	RCCGGY	1 cut(s)	67
Cfr13I	GGNCC	2 cut(s)	22, 94
Csp6I	GTAC	1 cut(s)	87
CviAII	CATG	1 cut(s)	255
CviJI	RGCY	5 cut(s)	9, 18, 64, 121, 193
CviKI_1	RGCY	5 cut(s)	9, 18, 64, 121, 193
CviQI	GTAC	1 cut(s)	87
DinI	GGCGCC	1 cut(s)	72
Eco147I	AGGCCT	1 cut(s)	9
Eco47I	GGWCC	2 cut(s)	22, 94
EgeI	GGCGCC	1 cut(s)	72
EheI	GGCGCC	1 cut(s)	72
FaeI	CATG	1 cut(s)	258
FaiI	YATR	4 cut(s)	50, 165, 167, 256
FalI	AAGNNNNNCTT	2 cut(s)	217, 249
FaqI	GGGAC	2 cut(s)	16, 80
FatI	CATG	1 cut(s)	254
FauI	CCCGC	1 cut(s)	150
Fnu4HI	GCNGC	2 cut(s)	74, 222
FokI	GGATG	1 cut(s)	184
Fsp4HI	GCNGC	2 cut(s)	74, 222
GlaI	GCGC	1 cut(s)	72
GluI	GCNGC	2 cut(s)	74, 222
HaeII	RGCGCY	1 cut(s)	74
HaeIII	GGCC	1 cut(s)	9
HapII	CCGG	2 cut(s)	68, 186
HhaI	GCGC	1 cut(s)	73
Hin1I	GRCGYC	1 cut(s)	71
Hin1II	CATG	1 cut(s)	258
Hin6I	GCGC	1 cut(s)	71
HinP1I	GCGC	1 cut(s)	71
HinfI	GANTC	3 cut(s)	29, 45, 182
HpaII	CCGG	2 cut(s)	68, 186
HphI	GGTGA	1 cut(s)	140
Hpy188I	TCNGA	2 cut(s)	44, 263
Hpy188III	TCNNGA	1 cut(s)	186
Hpy99I	CGWCG	1 cut(s)	17
HpyAV	CCTTC	1 cut(s)	160
HpyCH4III	ACNGT	2 cut(s)	91, 117
HpyCH4V	TGCA	2 cut(s)	4, 224
HpyF10VI	GCNNNNNNNGC	4 cut(s)	15, 24, 70, 230
Hsp92I	GRCGYC	1 cut(s)	71
Hsp92II	CATG	1 cut(s)	258
HspAI	GCGC	1 cut(s)	71
KasI	GGCGCC	1 cut(s)	70
Kpn2I	TCCGGA	1 cut(s)	185
LpnPI	CCDG	4 cut(s)	81, 111, 194, 199
Lsp1109I	GCAGC	1 cut(s)	208
MboII	GAAGA	1 cut(s)	256
Mly113I	GGCGCC	1 cut(s)	71
MlyI	GAGTC	1 cut(s)	38
MnlI	CCTC	2 cut(s)	20, 188
MroI	TCCGGA	1 cut(s)	185
MseI	TTAA	2 cut(s)	60, 204
MslI	CAYNNNNRTG	2 cut(s)	115, 253
MspI	CCGG	2 cut(s)	68, 186
MvnI	CGCG	2 cut(s)	27, 76
MwoI	GCNNNNNNNGC	4 cut(s)	15, 24, 70, 230
NarI	GGCGCC	1 cut(s)	71
NlaIII	CATG	1 cut(s)	258
NlaIV	GGNNCC	3 cut(s)	72, 96, 148
NspI	RCATGY	1 cut(s)	258
OliI	CACNNNNGTG	1 cut(s)	115
PceI	AGGCCT	1 cut(s)	9
PciI	ACATGT	1 cut(s)	254
PfeI	GAWTC	2 cut(s)	45, 182
PkrI	GCNGC	2 cut(s)	75, 223
PleI	GAGTC	1 cut(s)	37
PluTI	GGCGCC	1 cut(s)	74
PpsI	GAGTC	1 cut(s)	37
PscI	ACATGT	1 cut(s)	254
PspN4I	GGNNCC	3 cut(s)	72, 96, 148
PspPI	GGNCC	2 cut(s)	22, 94
RsaI	GTAC	1 cut(s)	88
RsaNI	GTAC	1 cut(s)	87
RseI	CAYNNNNRTG	2 cut(s)	115, 253
SaqAI	TTAA	2 cut(s)	60, 204
SatI	GCNGC	2 cut(s)	74, 222
Sau96I	GGNCC	2 cut(s)	22, 94
SchI	GAGTC	1 cut(s)	38
SetI	ASST	3 cut(s)	180, 195, 213
SfoI	GGCGCC	1 cut(s)	72
SgrAI	CRCCGGYG	1 cut(s)	67
SinI	GGWCC	2 cut(s)	22, 94
SmiMI	CAYNNNNRTG	2 cut(s)	115, 253
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
SseBI	AGGCCT	1 cut(s)	9
SsiI	CCGC	3 cut(s)	25, 74, 157
SspDI	GGCGCC	1 cut(s)	70
StuI	AGGCCT	1 cut(s)	9
TaaI	ACNGT	2 cut(s)	91, 117
TaqI	TCGA	1 cut(s)	180
TauI	GCSGC	1 cut(s)	76
TfiI	GAWTC	2 cut(s)	45, 182
Tru1I	TTAA	2 cut(s)	60, 204
Tru9I	TTAA	2 cut(s)	60, 204
TscAI	CASTG	2 cut(s)	96, 120
TseI	GCWGC	1 cut(s)	221
TspDTI	ATGAA	1 cut(s)	188
TspRI	CASTG	2 cut(s)	96, 120
VpaK11BI	GGWCC	2 cut(s)	22, 94
XceI	RCATGY	1 cut(s)	258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.