Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006451

Physical Location & Seq

Genomic Coordinates Forward (+)

30627956 .. 30628534

Gene Structure 579 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0282700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGGAACAACTAGTGACCACACAATCTATATAAAGGAGTTAGGTGAAGAAACTTGTCGGTCATTATTCTATCACGTTGCATTTTTTGATGGTGAAAGAAAAGAGTCTAAAAAGTTTGAAGATATTGGTAATGAAATTGTAAAGAGGTGCAAAGGCTTGCCTCTTGCTGCTAAGACTTTGGGTAGTCTAATGCGGTGTAAGAAGACAGTGCAACAATGGGTAGATGTTTTGAATAGTAAGATATGGGAATTAGAAGTGGTTGAACATGAAGTTTTTCAACCGTTATTTCTAAGTTACCATGATTTAGATCCCCAGTCCAAACGTTGCCTTTTGTATTGTACTACATTTCCTAAAGATCATAAGATTGTCAAGGATCAATTGATTGAGTTATGGATGTCACAAGATTATCTTGAAGTCAAAGGAGGAAACAAAGAAATAACAACAGTAGGTCAAATGTGTTTTGAGAACTTAGTAACACGGTCTTTCTTTCAAGAAATTGAGGAAGATTCTAAGGGGAATATCAGAAGTTGTAAAATGCACGACATTGTGCATGACTTTGTGCAATACCTGACCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006996 GO:0007010 GO:0007017 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009893 GO:0009987 GO:0010562 GO:0010604 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0030865 GO:0031098 GO:0031122 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043412 GO:0043549 GO:0043622 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0046777 GO:0048046 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0080090 GO:0097435 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Pkinase

Protein Analysis

192

Amino Acids

22.47

Weight (kDa)

5.82

Isoelectric Point (pI)

57.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_DRP	PF23559	116 - 187	2.6e-24	Disease resistance protein Winged helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0006451)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06030
fragaria_vesca	FvH4_4g14910 FvH4_4g14910
malus_domestica	MD13G1186500.v1.1 MD16G1187200.v1.1
prunus_persica	Prupe.1G154200_v2.0.a1 Prupe.1G154200_v2.0.a1
pyrus_communis	pycom13g16140 pycom16g15720
rosa_chinensis	RchiOBHm_Chr4g0417171
rosa_laevigata	RLG00000007924
rosa_multiflora	Rmu_co8320689.1_g000001 Rmu_sc0000959.1_g000002 Rmu_sc0001643.1_g000003
rosa_roxburghii	Rroxscaffold_3G00245000 Rroxscaffold_5G00361000
rosa_rugosa	Rorug02G0282700 Rorug04G0146200
rosa_samantha	Rh2AG335100 Rh4AG209200 Rh4BG206100 Rh4BG206300 Rh4CG220200 Rh4DG206900 Rh5AG248600
rosa_wichuraiana	Rw4G017720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	193
AclI	AACGTT	1 cut(s)	322
AclWI	GGATC	2 cut(s)	302, 381
AfaI	GTAC	1 cut(s)	340
AgsI	TTSAA	6 cut(s)	119, 232, 263, 278, 413, 491
AhlI	ACTAGT	1 cut(s)	11
AlwI	GGATC	2 cut(s)	302, 381
ApeKI	GCWGC	1 cut(s)	167
Asp700I	GAANNNNTTC	1 cut(s)	273
AsuHPI	GGTGA	2 cut(s)	56, 104
BbsI	GAAGAC	1 cut(s)	209
BbvI	GCAGC	1 cut(s)	154
BccI	CCATC	1 cut(s)	83
BcuI	ACTAGT	1 cut(s)	11
BfaI	CTAG	1 cut(s)	12
BisI	GCNGC	1 cut(s)	168
BlsI	GCNGC	1 cut(s)	169
BmrI	ACTGGG	1 cut(s)	307
BmuI	ACTGGG	1 cut(s)	307
BpiI	GAAGAC	1 cut(s)	209
BsaBI	GATNNNNATC	1 cut(s)	306
Bse1I	ACTGG	1 cut(s)	313
Bse8I	GATNNNNATC	1 cut(s)	306
BseGI	GGATG	1 cut(s)	399
BseJI	GATNNNNATC	1 cut(s)	306
BseNI	ACTGG	1 cut(s)	313
BseXI	GCAGC	1 cut(s)	154
Bsp143I	GATC	3 cut(s)	307, 355, 373
BspACI	CCGC	1 cut(s)	193
BspPI	GGATC	2 cut(s)	302, 381
BsrI	ACTGG	1 cut(s)	313
BssMI	GATC	3 cut(s)	307, 355, 373
Bst4CI	ACNGT	4 cut(s)	208, 282, 445, 480
BstC8I	GCNNGC	1 cut(s)	158
BstDEI	CTNAG	4 cut(s)	171, 290, 469, 510
BstF5I	GGATG	1 cut(s)	399
BstKTI	GATC	3 cut(s)	310, 358, 376
BstMBI	GATC	3 cut(s)	307, 355, 373
BstV1I	GCAGC	1 cut(s)	154
BstV2I	GAAGAC	1 cut(s)	209
BstX2I	RGATCY	1 cut(s)	307
BstYI	RGATCY	1 cut(s)	307
BtsCI	GGATG	1 cut(s)	399
BtsIMutI	CAGTG	1 cut(s)	213
Cac8I	GCNNGC	1 cut(s)	158
Csp6I	GTAC	1 cut(s)	339
CviAII	CATG	3 cut(s)	266, 299, 551
CviJI	RGCY	1 cut(s)	156
CviKI_1	RGCY	1 cut(s)	156
CviQI	GTAC	1 cut(s)	339
DdeI	CTNAG	4 cut(s)	171, 290, 469, 510
DpnI	GATC	3 cut(s)	309, 357, 375
DpnII	GATC	3 cut(s)	307, 355, 373
FaeI	CATG	3 cut(s)	269, 302, 554
FaiI	YATR	8 cut(s)	30, 32, 244, 267, 300, 360, 391, 552
FalI	AAGNNNNNCTT	2 cut(s)	393, 425
FatI	CATG	3 cut(s)	265, 298, 550
Fnu4HI	GCNGC	1 cut(s)	168
FokI	GGATG	1 cut(s)	406
Fsp4HI	GCNGC	1 cut(s)	168
FspBI	CTAG	1 cut(s)	12
GluI	GCNGC	1 cut(s)	168
Hin1II	CATG	3 cut(s)	269, 302, 554
HinfI	GANTC	2 cut(s)	104, 506
HphI	GGTGA	2 cut(s)	56, 104
Hpy188I	TCNGA	1 cut(s)	524
Hpy188III	TCNNGA	2 cut(s)	410, 491
HpyCH4III	ACNGT	4 cut(s)	208, 282, 445, 480
HpyCH4IV	ACGT	2 cut(s)	75, 322
HpyCH4V	TGCA	6 cut(s)	80, 150, 211, 538, 550, 562
HpyF3I	CTNAG	4 cut(s)	171, 290, 469, 510
HpySE526I	ACGT	2 cut(s)	75, 322
Hsp92II	CATG	3 cut(s)	269, 302, 554
Kzo9I	GATC	3 cut(s)	307, 355, 373
LpnPI	CCDG	1 cut(s)	326
Lsp1109I	GCAGC	1 cut(s)	154
MaeI	CTAG	1 cut(s)	12
MaeII	ACGT	2 cut(s)	75, 322
MaeIII	GTNAC	4 cut(s)	14, 293, 396, 472
MalI	GATC	3 cut(s)	309, 357, 375
MboI	GATC	3 cut(s)	307, 355, 373
MboII	GAAGA	4 cut(s)	59, 131, 214, 515
MfeI	CAATTG	1 cut(s)	377
MflI	RGATCY	1 cut(s)	307
MluCI	AATT	5 cut(s)	135, 248, 377, 495, 574
MlyI	GAGTC	1 cut(s)	113
MnlI	CCTC	4 cut(s)	138, 171, 416, 493
MroXI	GAANNNNTTC	1 cut(s)	273
MseI	TTAA	1 cut(s)	577
MunI	CAATTG	1 cut(s)	377
NdeII	GATC	3 cut(s)	307, 355, 373
NlaIII	CATG	3 cut(s)	269, 302, 554
NmuCI	GTSAC	2 cut(s)	14, 396
PdmI	GAANNNNTTC	1 cut(s)	273
PfeI	GAWTC	1 cut(s)	506
PkrI	GCNGC	1 cut(s)	169
PleI	GAGTC	1 cut(s)	112
PpsI	GAGTC	1 cut(s)	112
Psp1406I	AACGTT	1 cut(s)	322
PsuI	RGATCY	1 cut(s)	307
RsaI	GTAC	1 cut(s)	340
RsaNI	GTAC	1 cut(s)	339
SaqAI	TTAA	1 cut(s)	577
SatI	GCNGC	1 cut(s)	168
Sau3AI	GATC	3 cut(s)	307, 355, 373
SchI	GAGTC	1 cut(s)	113
SetI	ASST	6 cut(s)	46, 78, 149, 325, 451, 570
SpeI	ACTAGT	1 cut(s)	11
Sse9I	AATT	5 cut(s)	135, 248, 377, 495, 574
SsiI	CCGC	1 cut(s)	193
SspMI	CTAG	1 cut(s)	12
TaaI	ACNGT	4 cut(s)	208, 282, 445, 480
TaiI	ACGT	2 cut(s)	78, 325
TaqII	GACCGA	1 cut(s)	48
TasI	AATT	5 cut(s)	135, 248, 377, 495, 574
TatI	WGTACW	1 cut(s)	338
TfiI	GAWTC	1 cut(s)	506
Tru1I	TTAA	1 cut(s)	577
Tru9I	TTAA	1 cut(s)	577
TscAI	CASTG	1 cut(s)	213
TseFI	GTSAC	2 cut(s)	14, 396
TseI	GCWGC	1 cut(s)	167
Tsp45I	GTSAC	2 cut(s)	14, 396
TspDTI	ATGAA	2 cut(s)	147, 282
TspRI	CASTG	1 cut(s)	213
XmnI	GAANNNNTTC	1 cut(s)	273
XspI	CTAG	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.