Rmu_co8375535.1_g000001

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8375535.1
Physical Location & Seq
Forward (+)
801 .. 1143
343 bp
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UTR
Exon/CDS
Intron
Rmu_co8375535.1_g000001.1.cds

Sequence Viewer

Length: 343 bp
atgaaatgccacatggataaatcactccgattggaatacatggtgatcaaggatgctagagaattatgggttgcgctagaagagcgctttgctaatgtcaaggattccctcctccctgacttgaaagttcaatggagcaatctacgattcgccaacttcaagtccgtagctgaatataattcagaagctctacgcctccaaaccatgttggggttctatggacaaccagtcatagagcaagaggtaattgagaaaactctctccaccttccccgtctcagcaattttggtatccaagaattacagaggtgagtacaatgctgggcggatcacaagatttcata
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

114

Amino Acids

13.33

Weight (kDa)

8.73

Isoelectric Point (pI)

47.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 325
AclWI GGATC 1 cut(s) 335
AfaI GTAC 1 cut(s) 314
AfeI AGCGCT 1 cut(s) 86
AfiI CCNNNNNNNGG 1 cut(s) 210
AgsI TTSAA 3 cut(s) 124, 131, 160
AhdI GACNNNNNGTC 1 cut(s) 227
AluBI AGCT 2 cut(s) 170, 188
AluI AGCT 2 cut(s) 170, 188
Alw26I GTCTC 1 cut(s) 280
AlwI GGATC 1 cut(s) 335
Aor51HI AGCGCT 1 cut(s) 86
AspLEI GCGC 2 cut(s) 76, 87
AsuHPI GGTGA 2 cut(s) 55, 320
BciVI GTATCC 1 cut(s) 301
BclI TGATCA 1 cut(s) 45
BcoDI GTCTC 1 cut(s) 280
BfaI CTAG 2 cut(s) 57, 77
BfoI RGCGCY 1 cut(s) 88
BfuI GTATCC 1 cut(s) 301
BmeRI GACNNNNNGTC 1 cut(s) 227
BmsI GCATC 1 cut(s) 43
Bsc4I CCNNNNNNNGG 1 cut(s) 210
Bse1I ACTGG 1 cut(s) 227
BseGI GGATG 1 cut(s) 58
BseLI CCNNNNNNNGG 1 cut(s) 210
BseMII CTCAG 1 cut(s) 291
BseNI ACTGG 1 cut(s) 227
BseRI GAGGAG 1 cut(s) 101
BseYI CCCAGC 1 cut(s) 320
BslI CCNNNNNNNGG 1 cut(s) 210
BsmAI GTCTC 1 cut(s) 280
BsmBI CGTCTC 1 cut(s) 280
Bsp143I GATC 2 cut(s) 45, 327
BspACI CCGC 1 cut(s) 325
BspCNI CTCAG 1 cut(s) 290
BspPI GGATC 1 cut(s) 335
BspQI GCTCTTC 1 cut(s) 75
BsrI ACTGG 1 cut(s) 227
BssMI GATC 2 cut(s) 45, 327
Bst6I CTCTTC 1 cut(s) 75
BstDEI CTNAG 1 cut(s) 277
BstF5I GGATG 1 cut(s) 58
BstH2I RGCGCY 1 cut(s) 88
BstHHI GCGC 2 cut(s) 76, 87
BstKTI GATC 2 cut(s) 48, 330
BstMAI GTCTC 1 cut(s) 280
BstMBI GATC 2 cut(s) 45, 327
BstMWI GCNNNNNNNGC 1 cut(s) 82
BsuI GTATCC 1 cut(s) 301
BtsCI GGATG 1 cut(s) 58
CfoI GCGC 2 cut(s) 76, 87
Csp6I GTAC 1 cut(s) 313
CviAII CATG 3 cut(s) 13, 40, 205
CviJI RGCY 2 cut(s) 170, 188
CviKI_1 RGCY 2 cut(s) 170, 188
CviQI GTAC 1 cut(s) 313
DdeI CTNAG 1 cut(s) 277
DpnI GATC 2 cut(s) 47, 329
DpnII GATC 2 cut(s) 45, 327
DriI GACNNNNNGTC 1 cut(s) 227
Eam1104I CTCTTC 1 cut(s) 75
Eam1105I GACNNNNNGTC 1 cut(s) 227
EarI CTCTTC 1 cut(s) 75
EciI GGCGGA 1 cut(s) 340
Eco47III AGCGCT 1 cut(s) 86
Esp3I CGTCTC 1 cut(s) 280
FaeI CATG 3 cut(s) 16, 43, 208
FaiI YATR 8 cut(s) 14, 41, 67, 177, 206, 219, 233, 342
FatI CATG 3 cut(s) 12, 39, 204
FbaI TGATCA 1 cut(s) 45
FokI GGATG 1 cut(s) 65
FspBI CTAG 2 cut(s) 57, 77
GlaI GCGC 2 cut(s) 75, 86
GsaI CCCAGC 1 cut(s) 324
HaeII RGCGCY 1 cut(s) 88
HhaI GCGC 2 cut(s) 76, 87
Hin1II CATG 3 cut(s) 16, 43, 208
Hin6I GCGC 2 cut(s) 74, 85
HinP1I GCGC 2 cut(s) 74, 85
HinfI GANTC 2 cut(s) 104, 147
HphI GGTGA 2 cut(s) 55, 320
Hpy188I TCNGA 2 cut(s) 29, 184
HpyAV CCTTC 1 cut(s) 277
HpyF10VI GCNNNNNNNGC 1 cut(s) 82
HpyF3I CTNAG 1 cut(s) 277
Hsp92II CATG 3 cut(s) 16, 43, 208
HspAI GCGC 2 cut(s) 74, 85
Ksp22I TGATCA 1 cut(s) 45
Kzo9I GATC 2 cut(s) 45, 327
LguI GCTCTTC 1 cut(s) 75
LmnI GCTCC 1 cut(s) 135
LpnPI CCDG 3 cut(s) 129, 240, 306
LweI GCATC 1 cut(s) 43
MaeI CTAG 2 cut(s) 57, 77
MalI GATC 2 cut(s) 47, 329
MboI GATC 2 cut(s) 45, 327
MboII GAAGA 1 cut(s) 92
MluCI AATT 5 cut(s) 62, 178, 246, 282, 298
MnlI CCTC 5 cut(s) 119, 122, 206, 235, 299
MwoI GCNNNNNNNGC 1 cut(s) 82
NdeII GATC 2 cut(s) 45, 327
NlaIII CATG 3 cut(s) 16, 43, 208
PciSI GCTCTTC 1 cut(s) 75
PfeI GAWTC 2 cut(s) 104, 147
PspFI CCCAGC 1 cut(s) 320
RsaI GTAC 1 cut(s) 314
RsaNI GTAC 1 cut(s) 313
SapI GCTCTTC 1 cut(s) 75
Sau3AI GATC 2 cut(s) 45, 327
SetI ASST 5 cut(s) 172, 190, 246, 269, 310
SfaNI GCATC 1 cut(s) 43
Sse9I AATT 5 cut(s) 62, 178, 246, 282, 298
SsiI CCGC 1 cut(s) 325
SspMI CTAG 2 cut(s) 57, 77
TasI AATT 5 cut(s) 62, 178, 246, 282, 298
TatI WGTACW 1 cut(s) 312
TfiI GAWTC 2 cut(s) 104, 147
TspDTI ATGAA 2 cut(s) 17, 329
TspGWI ACGGA 1 cut(s) 154
XspI CTAG 2 cut(s) 57, 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.