Rmu_sc0000332.1_g000051

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000332.1
OG0016468
Physical Location & Seq
Reverse (-)
233993 .. 234653
661 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000332.1_g000051.1.cds

Sequence Viewer

Length: 390 bp
atggcaattaaggatgctagagaattatgggttgcgctagaagagcattttggcaatgtcaaggactccctcctccccgacttgaaagttcaatggagcaatctacgattcgccgacttcaagtctgtagctgaatttaatttagaagctctacgcctcaaaaccatgttagggttcagtggacaacccgtcacggagcaagagctaattgagaaaactctcttcaccttccccgtctcaacaatattggacgagcacgtggcaatacatggcaacgtgggagaggaggccgtgggactccaggacatggtggagccgcccaaggccttgggaatggccccaattcctctaggggacgccacccaagtgaaaacaatgcacctcaattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

129

Amino Acids

14.33

Weight (kDa)

4.87

Isoelectric Point (pI)

40.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 307
AciI CCGC 1 cut(s) 317
AcsI RAATTY 1 cut(s) 134
AcvI CACGTG 1 cut(s) 259
AcyI GRCGYC 1 cut(s) 357
AfiI CCNNNNNNNGG 2 cut(s) 171, 307
AgsI TTSAA 3 cut(s) 85, 92, 121
AhdI GACNNNNNGTC 2 cut(s) 121, 188
AjnI CCWGG 1 cut(s) 300
AjuI GAANNNNNNNTTGG 2 cut(s) 33, 65
AleI CACNNNNGTG 1 cut(s) 365
AluBI AGCT 3 cut(s) 131, 149, 205
AluI AGCT 3 cut(s) 131, 149, 205
Alw21I GWGCWC 1 cut(s) 258
Alw26I GTCTC 1 cut(s) 241
AoxI GGCC 3 cut(s) 288, 324, 336
ApoI RAATTY 1 cut(s) 134
AspLEI GCGC 1 cut(s) 37
AspS9I GGNCC 1 cut(s) 337
AsuHPI GGTGA 1 cut(s) 217
BbrPI CACGTG 1 cut(s) 259
Bbv12I GWGCWC 1 cut(s) 258
BceAI ACGGC 1 cut(s) 275
BciT130I CCWGG 1 cut(s) 302
BcoDI GTCTC 1 cut(s) 241
BfaI CTAG 3 cut(s) 18, 38, 350
BfmI CTRYAG 1 cut(s) 126
BisI GCNGC 1 cut(s) 317
BlsI GCNGC 1 cut(s) 318
Bme1390I CCNGG 1 cut(s) 302
BmeRI GACNNNNNGTC 2 cut(s) 121, 188
BmgT120I GGNCC 1 cut(s) 337
BmiI GGNNCC 2 cut(s) 315, 339
BmrFI CCNGG 1 cut(s) 302
BmsI GCATC 1 cut(s) 4
BpmI CTGGAG 1 cut(s) 284
BsaAI YACGTR 1 cut(s) 259
BsaHI GRCGYC 1 cut(s) 357
BsaJI CCNNGG 3 cut(s) 291, 321, 327
Bsc4I CCNNNNNNNGG 2 cut(s) 171, 307
Bse3DI GCAATG 1 cut(s) 61
BseBI CCWGG 1 cut(s) 302
BseDI CCNNGG 3 cut(s) 291, 321, 327
BseGI GGATG 1 cut(s) 19
BseLI CCNNNNNNNGG 2 cut(s) 171, 307
BseMI GCAATG 1 cut(s) 61
BseRI GAGGAG 2 cut(s) 62, 299
BshFI GGCC 3 cut(s) 290, 326, 338
BsiHKAI GWGCWC 1 cut(s) 258
BslFI GGGAC 2 cut(s) 309, 368
BslI CCNNNNNNNGG 2 cut(s) 171, 307
BsmAI GTCTC 1 cut(s) 241
BsmBI CGTCTC 1 cut(s) 241
BsmFI GGGAC 2 cut(s) 309, 368
BsnI GGCC 3 cut(s) 290, 326, 338
Bsp1286I GDGCHC 1 cut(s) 258
BspACI CCGC 1 cut(s) 317
BspANI GGCC 3 cut(s) 290, 326, 338
BspLI GGNNCC 2 cut(s) 315, 339
BspQI GCTCTTC 1 cut(s) 36
BsrDI GCAATG 1 cut(s) 61
BssECI CCNNGG 3 cut(s) 291, 321, 327
BssNI GRCGYC 1 cut(s) 357
BssT1I CCWWGG 2 cut(s) 321, 327
Bst2UI CCWGG 1 cut(s) 302
Bst6I CTCTTC 2 cut(s) 36, 227
BstACI GRCGYC 1 cut(s) 357
BstBAI YACGTR 1 cut(s) 259
BstDSI CCRYGG 1 cut(s) 291
BstF5I GGATG 1 cut(s) 19
BstHHI GCGC 1 cut(s) 37
BstMAI GTCTC 1 cut(s) 241
BstMWI GCNNNNNNNGC 1 cut(s) 43
BstNI CCWGG 1 cut(s) 302
BstSCI CCNGG 1 cut(s) 300
BstSFI CTRYAG 1 cut(s) 126
BstXI CCANNNNNNTGG 1 cut(s) 328
BsuRI GGCC 3 cut(s) 290, 326, 338
BtgI CCRYGG 1 cut(s) 291
BtsCI GGATG 1 cut(s) 19
BtsIMutI CAGTG 1 cut(s) 184
CfoI GCGC 1 cut(s) 37
Cfr13I GGNCC 1 cut(s) 337
CseI GACGC 1 cut(s) 365
CviAII CATG 3 cut(s) 166, 269, 307
CviJI RGCY 7 cut(s) 131, 149, 205, 290, 316, 326, 338
CviKI_1 RGCY 7 cut(s) 131, 149, 205, 290, 316, 326, 338
DriI GACNNNNNGTC 2 cut(s) 121, 188
Eam1104I CTCTTC 2 cut(s) 36, 227
Eam1105I GACNNNNNGTC 2 cut(s) 121, 188
EarI CTCTTC 2 cut(s) 36, 227
Eco130I CCWWGG 2 cut(s) 321, 327
Eco147I AGGCCT 1 cut(s) 326
Eco72I CACGTG 1 cut(s) 259
EcoRII CCWGG 1 cut(s) 300
EcoT14I CCWWGG 2 cut(s) 321, 327
ErhI CCWWGG 2 cut(s) 321, 327
Esp3I CGTCTC 1 cut(s) 241
FaeI CATG 3 cut(s) 169, 272, 310
FaiI YATR 4 cut(s) 28, 167, 270, 308
FaqI GGGAC 2 cut(s) 309, 368
FatI CATG 3 cut(s) 165, 268, 306
Fnu4HI GCNGC 1 cut(s) 317
FokI GGATG 1 cut(s) 26
Fsp4HI GCNGC 1 cut(s) 317
FspBI CTAG 3 cut(s) 18, 38, 350
GlaI GCGC 1 cut(s) 36
GluI GCNGC 1 cut(s) 317
GsuI CTGGAG 1 cut(s) 284
HaeIII GGCC 3 cut(s) 290, 326, 338
HgaI GACGC 1 cut(s) 365
HhaI GCGC 1 cut(s) 37
Hin1I GRCGYC 1 cut(s) 357
Hin1II CATG 3 cut(s) 169, 272, 310
Hin6I GCGC 1 cut(s) 35
HinP1I GCGC 1 cut(s) 35
HinfI GANTC 3 cut(s) 65, 108, 297
HphI GGTGA 1 cut(s) 217
Hpy166II GTNNAC 1 cut(s) 182
Hpy8I GTNNAC 1 cut(s) 182
HpyAV CCTTC 1 cut(s) 238
HpyCH4IV ACGT 2 cut(s) 258, 276
HpyCH4V TGCA 1 cut(s) 379
HpyF10VI GCNNNNNNNGC 1 cut(s) 43
HpySE526I ACGT 2 cut(s) 258, 276
Hsp92I GRCGYC 1 cut(s) 357
Hsp92II CATG 3 cut(s) 169, 272, 310
HspAI GCGC 1 cut(s) 35
LguI GCTCTTC 1 cut(s) 36
LmnI GCTCC 3 cut(s) 96, 196, 313
LpnPI CCDG 2 cut(s) 287, 314
LweI GCATC 1 cut(s) 4
MaeI CTAG 3 cut(s) 18, 38, 350
MaeII ACGT 2 cut(s) 258, 276
MaeIII GTNAC 1 cut(s) 190
MboII GAAGA 2 cut(s) 53, 214
MhlI GDGCHC 1 cut(s) 258
MluCI AATT 7 cut(s) 6, 23, 134, 139, 207, 342, 385
MlyI GAGTC 2 cut(s) 59, 291
MnlI CCTC 6 cut(s) 80, 83, 167, 277, 280, 357
MseI TTAA 3 cut(s) 9, 138, 388
MslI CAYNNNNRTG 1 cut(s) 365
MspR9I CCNGG 1 cut(s) 302
MvaI CCWGG 1 cut(s) 302
MwoI GCNNNNNNNGC 1 cut(s) 43
NlaIII CATG 3 cut(s) 169, 272, 310
NlaIV GGNNCC 2 cut(s) 315, 339
NmuCI GTSAC 1 cut(s) 190
OliI CACNNNNGTG 1 cut(s) 365
PceI AGGCCT 1 cut(s) 326
PciSI GCTCTTC 1 cut(s) 36
PfeI GAWTC 1 cut(s) 108
PflMI CCANNNNNTGG 1 cut(s) 307
PfoI TCCNGGA 1 cut(s) 300
PkrI GCNGC 1 cut(s) 318
PleI GAGTC 2 cut(s) 59, 291
PmaCI CACGTG 1 cut(s) 259
PmlI CACGTG 1 cut(s) 259
PpsI GAGTC 2 cut(s) 59, 291
Ppu21I YACGTR 1 cut(s) 259
Psp6I CCWGG 1 cut(s) 300
PspCI CACGTG 1 cut(s) 259
PspGI CCWGG 1 cut(s) 300
PspN4I GGNNCC 2 cut(s) 315, 339
PspPI GGNCC 1 cut(s) 337
RseI CAYNNNNRTG 1 cut(s) 365
SapI GCTCTTC 1 cut(s) 36
SaqAI TTAA 3 cut(s) 9, 138, 388
SatI GCNGC 1 cut(s) 317
Sau96I GGNCC 1 cut(s) 337
SchI GAGTC 2 cut(s) 59, 291
ScrFI CCNGG 1 cut(s) 302
SduI GDGCHC 1 cut(s) 258
SetI ASST 7 cut(s) 133, 151, 207, 230, 261, 279, 384
SfaNI GCATC 1 cut(s) 4
SfcI CTRYAG 1 cut(s) 126
SmiMI CAYNNNNRTG 1 cut(s) 365
Sse9I AATT 7 cut(s) 6, 23, 134, 139, 207, 342, 385
SseBI AGGCCT 1 cut(s) 326
SsiI CCGC 1 cut(s) 317
SspI AATATT 1 cut(s) 246
SspMI CTAG 3 cut(s) 18, 38, 350
StuI AGGCCT 1 cut(s) 326
StyD4I CCNGG 1 cut(s) 300
StyI CCWWGG 2 cut(s) 321, 327
TaiI ACGT 2 cut(s) 261, 279
TasI AATT 7 cut(s) 6, 23, 134, 139, 207, 342, 385
TauI GCSGC 1 cut(s) 319
TfiI GAWTC 1 cut(s) 108
Tru1I TTAA 3 cut(s) 9, 138, 388
Tru9I TTAA 3 cut(s) 9, 138, 388
TscAI CASTG 1 cut(s) 184
TseFI GTSAC 1 cut(s) 190
Tsp45I GTSAC 1 cut(s) 190
TspGWI ACGGA 1 cut(s) 209
TspRI CASTG 1 cut(s) 184
Van91I CCANNNNNTGG 1 cut(s) 307
XapI RAATTY 1 cut(s) 134
XspI CTAG 3 cut(s) 18, 38, 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.