Rmu_sc0001600.1_g000002

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001600.1
OG0016468
Physical Location & Seq
Reverse (-)
3833 .. 4243
411 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001600.1_g000002.1.cds

Sequence Viewer

Length: 411 bp
atgtcgaaacttgactttcctgcacttacctcaactggctcggaatatcatagttgggccacggatgttgagcaccatctcacttcaaaagggatcctacccttgattcaagctcctaatcctactctcatatttgagcgtacggctacgaacaatgccaccgccctcatcttgatgaggctccacatggataaatcactccgactggagtacatggcaatcaaggatgttagagaattatgggtcgcgctagaagagcgatttggtaatatcaaggataccctcctccctgacttgaaagttcaatggggcaatctacgattcgccgacttcaagtctgtagctgaatataattcagaagttctacggctcaaaaccatgttggggttctgtggacaacccgtcacatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

136

Amino Acids

15.49

Weight (kDa)

6.41

Isoelectric Point (pI)

27.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 248
AciI CCGC 1 cut(s) 162
AclWI GGATC 2 cut(s) 88, 101
AfaI GTAC 2 cut(s) 142, 212
AfiI CCNNNNNNNGG 1 cut(s) 384
AgsI TTSAA 5 cut(s) 87, 110, 298, 305, 334
AhdI GACNNNNNGTC 2 cut(s) 334, 401
AjuI GAANNNNNNNTTGG 2 cut(s) 246, 278
AluBI AGCT 2 cut(s) 113, 344
AluI AGCT 2 cut(s) 113, 344
Alw21I GWGCWC 1 cut(s) 75
AlwI GGATC 2 cut(s) 88, 101
AoxI GGCC 1 cut(s) 57
AspLEI GCGC 1 cut(s) 250
AspS9I GGNCC 1 cut(s) 57
BamHI GGATCC 1 cut(s) 93
Bbv12I GWGCWC 1 cut(s) 75
BccI CCATC 1 cut(s) 84
BceAI ACGGC 2 cut(s) 159, 383
BciVI GTATCC 1 cut(s) 271
BfaI CTAG 1 cut(s) 251
BfmI CTRYAG 1 cut(s) 339
BfuI GTATCC 1 cut(s) 271
BmeRI GACNNNNNGTC 2 cut(s) 334, 401
BmgT120I GGNCC 1 cut(s) 57
BmiI GGNNCC 2 cut(s) 95, 182
BpmI CTGGAG 1 cut(s) 227
BsaJI CCNNGG 1 cut(s) 60
Bsc4I CCNNNNNNNGG 1 cut(s) 384
Bse1I ACTGG 2 cut(s) 40, 210
BseDI CCNNGG 1 cut(s) 60
BseGI GGATG 2 cut(s) 70, 232
BseLI CCNNNNNNNGG 1 cut(s) 384
BseNI ACTGG 2 cut(s) 40, 210
BseRI GAGGAG 1 cut(s) 275
BsgI GTGCAG 1 cut(s) 6
Bsh1236I CGCG 1 cut(s) 248
BshFI GGCC 1 cut(s) 59
BsiHKAI GWGCWC 1 cut(s) 75
BsiWI CGTACG 1 cut(s) 140
BslI CCNNNNNNNGG 1 cut(s) 384
BsnI GGCC 1 cut(s) 59
Bsp1286I GDGCHC 1 cut(s) 75
Bsp143I GATC 1 cut(s) 93
BspACI CCGC 1 cut(s) 162
BspANI GGCC 1 cut(s) 59
BspFNI CGCG 1 cut(s) 248
BspLI GGNNCC 2 cut(s) 95, 182
BspPI GGATC 2 cut(s) 88, 101
BspQI GCTCTTC 1 cut(s) 249
BsrI ACTGG 2 cut(s) 40, 210
BssECI CCNNGG 1 cut(s) 60
BssMI GATC 1 cut(s) 93
Bst6I CTCTTC 1 cut(s) 249
BstDSI CCRYGG 1 cut(s) 60
BstF5I GGATG 2 cut(s) 70, 232
BstFNI CGCG 1 cut(s) 248
BstHHI GCGC 1 cut(s) 250
BstKTI GATC 1 cut(s) 96
BstMBI GATC 1 cut(s) 93
BstMWI GCNNNNNNNGC 1 cut(s) 256
BstSFI CTRYAG 1 cut(s) 339
BstUI CGCG 1 cut(s) 248
BstX2I RGATCY 1 cut(s) 93
BstYI RGATCY 1 cut(s) 93
BsuI GTATCC 1 cut(s) 271
BsuRI GGCC 1 cut(s) 59
BtgI CCRYGG 1 cut(s) 60
BtsCI GGATG 2 cut(s) 70, 232
CfoI GCGC 1 cut(s) 250
Cfr13I GGNCC 1 cut(s) 57
Csp6I GTAC 2 cut(s) 141, 211
CspCI CAANNNNNGTGG 2 cut(s) 49, 84
CviAII CATG 3 cut(s) 187, 214, 379
CviJI RGCY 7 cut(s) 39, 59, 113, 146, 181, 344, 370
CviKI_1 RGCY 7 cut(s) 39, 59, 113, 146, 181, 344, 370
CviQI GTAC 2 cut(s) 141, 211
DpnI GATC 1 cut(s) 95
DpnII GATC 1 cut(s) 93
DriI GACNNNNNGTC 2 cut(s) 334, 401
Eam1104I CTCTTC 1 cut(s) 249
Eam1105I GACNNNNNGTC 2 cut(s) 334, 401
EarI CTCTTC 1 cut(s) 249
FaeI CATG 3 cut(s) 190, 217, 382
FaiI YATR 8 cut(s) 51, 131, 188, 215, 241, 351, 380, 409
FatI CATG 3 cut(s) 186, 213, 378
FokI GGATG 2 cut(s) 77, 239
FspBI CTAG 1 cut(s) 251
GlaI GCGC 1 cut(s) 249
GsuI CTGGAG 1 cut(s) 227
HaeIII GGCC 1 cut(s) 59
HhaI GCGC 1 cut(s) 250
Hin1II CATG 3 cut(s) 190, 217, 382
Hin6I GCGC 1 cut(s) 248
HinP1I GCGC 1 cut(s) 248
HinfI GANTC 2 cut(s) 106, 321
Hpy166II GTNNAC 1 cut(s) 395
Hpy188I TCNGA 3 cut(s) 43, 203, 358
Hpy188III TCNNGA 1 cut(s) 172
Hpy8I GTNNAC 1 cut(s) 395
HpyCH4V TGCA 1 cut(s) 23
HpyF10VI GCNNNNNNNGC 1 cut(s) 256
Hsp92II CATG 3 cut(s) 190, 217, 382
HspAI GCGC 1 cut(s) 248
Kzo9I GATC 1 cut(s) 93
LguI GCTCTTC 1 cut(s) 249
LmnI GCTCC 2 cut(s) 118, 186
LpnPI CCDG 4 cut(s) 21, 33, 191, 303
MaeI CTAG 1 cut(s) 251
MaeIII GTNAC 1 cut(s) 403
MalI GATC 1 cut(s) 95
MboI GATC 1 cut(s) 93
MboII GAAGA 1 cut(s) 266
MflI RGATCY 1 cut(s) 93
MhlI GDGCHC 1 cut(s) 75
MluCI AATT 2 cut(s) 236, 352
MmeI TCCRAC 1 cut(s) 226
MnlI CCTC 5 cut(s) 40, 171, 176, 293, 296
MslI CAYNNNNRTG 1 cut(s) 173
MvnI CGCG 1 cut(s) 248
MwoI GCNNNNNNNGC 1 cut(s) 256
NdeII GATC 1 cut(s) 93
NlaIII CATG 3 cut(s) 190, 217, 382
NlaIV GGNNCC 2 cut(s) 95, 182
NmuCI GTSAC 1 cut(s) 403
PciSI GCTCTTC 1 cut(s) 249
PfeI GAWTC 2 cut(s) 106, 321
Pfl23II CGTACG 1 cut(s) 140
PspLI CGTACG 1 cut(s) 140
PspN4I GGNNCC 2 cut(s) 95, 182
PspPI GGNCC 1 cut(s) 57
PsuI RGATCY 1 cut(s) 93
RsaI GTAC 2 cut(s) 142, 212
RsaNI GTAC 2 cut(s) 141, 211
RseI CAYNNNNRTG 1 cut(s) 173
SapI GCTCTTC 1 cut(s) 249
Sau3AI GATC 1 cut(s) 93
Sau96I GGNCC 1 cut(s) 57
SduI GDGCHC 1 cut(s) 75
SetI ASST 3 cut(s) 32, 115, 346
SfcI CTRYAG 1 cut(s) 339
SmiMI CAYNNNNRTG 1 cut(s) 173
Sse9I AATT 2 cut(s) 236, 352
SsiI CCGC 1 cut(s) 162
SspMI CTAG 1 cut(s) 251
TaqI TCGA 1 cut(s) 5
TasI AATT 2 cut(s) 236, 352
TatI WGTACW 1 cut(s) 210
TfiI GAWTC 2 cut(s) 106, 321
TseFI GTSAC 1 cut(s) 403
Tsp45I GTSAC 1 cut(s) 403
TspGWI ACGGA 1 cut(s) 77
XspI CTAG 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.