Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002350.1

Orthogroup ID

OG0016468

Physical Location & Seq

Genomic Coordinates Forward (+)

29180 .. 29755

Gene Structure 576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002350.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

atgtcgaagccgaagcttgactttcctatacttgactcaactggcttggaatatcatagttgggtcacggatgttgagaaccacctcacttcaaaagggatccttcctgtaattcaggcaccaaaccctaagctcctatttgagcttacagctaaaaatattgccaccgctctcatcttgatgaggcgtgacatggataaatcactacgattggagtacatggcaatcaaggatgctagagaattatgggttgcgctacaagagcgttttggtaatgtgaaggacaccctccaccccgacttgaaagttcaatggagcaatctacgattcgccgacttcaagtccatagctgaacataattcagaagttcttcgcctcaaaactatgttggggttttgtggacaatctgtcacagagcaagaactaattgagaaaactctctccaccttccccatctcagcaattttgctatcaaaacaatatcgaaccgaatgcaatgctggacagatcatgaggtttcatcagctaattaatgtgttaacgtttaaagttcagcggcaactaaatctttactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Retrotran_gag_2 zf-CCHC

Protein Analysis

191

Amino Acids

22.06

Weight (kDa)

8.85

Isoelectric Point (pI)

40.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016468)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8375535.1_g000001 Rmu_sc0000332.1_g000051 Rmu_sc0000762.1_g000041 Rmu_sc0001600.1_g000002 Rmu_sc0002071.1_g000021 Rmu_sc0002161.1_g000008 Rmu_sc0002350.1_g000011 Rmu_sc0002983.1_g000022 Rmu_sc0003160.1_g000007 Rmu_sc0004248.1_g000014 Rmu_sc0004304.1_g000021 Rmu_sc0005069.1_g000021 Rmu_sc0013350.1_g000006 Rmu_sc0017231.1_g000006
rosa_samantha	Rh3BG272100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	118
AccBSI	CCGCTC	1 cut(s)	170
AciI	CCGC	2 cut(s)	168, 556
AclI	AACGTT	1 cut(s)	542
AclWI	GGATC	2 cut(s)	94, 107
AfaI	GTAC	1 cut(s)	218
AgsI	TTSAA	4 cut(s)	93, 304, 311, 340
AhdI	GACNNNNNGTC	2 cut(s)	340, 407
AluBI	AGCT	6 cut(s)	16, 133, 145, 152, 350, 526
AluI	AGCT	6 cut(s)	16, 133, 145, 152, 350, 526
AlwI	GGATC	2 cut(s)	94, 107
AseI	ATTAAT	1 cut(s)	531
Asp700I	GAANNNNTTC	1 cut(s)	369
AspLEI	GCGC	1 cut(s)	256
BamHI	GGATCC	1 cut(s)	99
BanI	GGYRCC	1 cut(s)	118
BccI	CCATC	1 cut(s)	461
BcgI	CGANNNNNNTGC	4 cut(s)	474, 479, 508, 513
BfaI	CTAG	1 cut(s)	237
BisI	GCNGC	1 cut(s)	557
BlsI	GCNGC	1 cut(s)	558
BmeRI	GACNNNNNGTC	2 cut(s)	340, 407
BmiI	GGNNCC	2 cut(s)	101, 120
BmsI	GCATC	1 cut(s)	223
Bpu10I	CCTNAGC	1 cut(s)	129
Bse1I	ACTGG	1 cut(s)	46
Bse3DI	GCAATG	1 cut(s)	502
BseGI	GGATG	2 cut(s)	76, 238
BseMI	GCAATG	1 cut(s)	502
BseMII	CTCAG	1 cut(s)	471
BseNI	ACTGG	1 cut(s)	46
BshNI	GGYRCC	1 cut(s)	118
BsmI	GAATGC	1 cut(s)	497
Bsp143I	GATC	2 cut(s)	99, 507
BspACI	CCGC	2 cut(s)	168, 556
BspCNI	CTCAG	1 cut(s)	470
BspHI	TCATGA	1 cut(s)	510
BspLI	GGNNCC	2 cut(s)	101, 120
BspPI	GGATC	2 cut(s)	94, 107
BspT107I	GGYRCC	1 cut(s)	118
BsrBI	CCGCTC	1 cut(s)	170
BsrDI	GCAATG	1 cut(s)	502
BsrI	ACTGG	1 cut(s)	46
BssMI	GATC	2 cut(s)	99, 507
BstDEI	CTNAG	2 cut(s)	129, 457
BstF5I	GGATG	2 cut(s)	76, 238
BstHHI	GCGC	1 cut(s)	256
BstKTI	GATC	2 cut(s)	102, 510
BstMBI	GATC	2 cut(s)	99, 507
BstMWI	GCNNNNNNNGC	1 cut(s)	262
BstX2I	RGATCY	1 cut(s)	99
BstYI	RGATCY	1 cut(s)	99
BtsCI	GGATG	2 cut(s)	76, 238
CciI	TCATGA	1 cut(s)	510
CfoI	GCGC	1 cut(s)	256
Csp6I	GTAC	1 cut(s)	217
CviAII	CATG	3 cut(s)	193, 220, 511
CviJI	RGCY	8 cut(s)	10, 16, 45, 133, 145, 152, 350, 526
CviKI_1	RGCY	8 cut(s)	10, 16, 45, 133, 145, 152, 350, 526
CviQI	GTAC	1 cut(s)	217
DdeI	CTNAG	2 cut(s)	129, 457
DpnI	GATC	2 cut(s)	101, 509
DpnII	GATC	2 cut(s)	99, 507
DraI	TTTAAA	1 cut(s)	547
DriI	GACNNNNNGTC	2 cut(s)	340, 407
Eam1105I	GACNNNNNGTC	2 cut(s)	340, 407
FaeI	CATG	3 cut(s)	196, 223, 514
FaiI	YATR	9 cut(s)	29, 57, 194, 221, 247, 347, 357, 386, 512
FalI	AAGNNNNNCTT	3 cut(s)	37, 87, 119
FatI	CATG	3 cut(s)	192, 219, 510
Fnu4HI	GCNGC	1 cut(s)	557
FokI	GGATG	2 cut(s)	83, 245
Fsp4HI	GCNGC	1 cut(s)	557
FspBI	CTAG	1 cut(s)	237
GlaI	GCGC	1 cut(s)	255
GluI	GCNGC	1 cut(s)	557
HhaI	GCGC	1 cut(s)	256
Hin1II	CATG	3 cut(s)	196, 223, 514
Hin6I	GCGC	1 cut(s)	254
HinP1I	GCGC	1 cut(s)	254
HincII	GTYRAC	1 cut(s)	540
HindII	GTYRAC	1 cut(s)	540
HindIII	AAGCTT	1 cut(s)	14
HinfI	GANTC	2 cut(s)	35, 327
HpaI	GTTAAC	1 cut(s)	540
Hpy166II	GTNNAC	2 cut(s)	401, 540
Hpy188I	TCNGA	1 cut(s)	364
Hpy188III	TCNNGA	2 cut(s)	178, 511
Hpy8I	GTNNAC	2 cut(s)	401, 540
HpyAV	CCTTC	3 cut(s)	113, 274, 457
HpyCH4IV	ACGT	1 cut(s)	542
HpyCH4V	TGCA	1 cut(s)	495
HpyF10VI	GCNNNNNNNGC	1 cut(s)	262
HpyF3I	CTNAG	2 cut(s)	129, 457
HpySE526I	ACGT	1 cut(s)	542
Hsp92II	CATG	3 cut(s)	196, 223, 514
HspAI	GCGC	1 cut(s)	254
KspAI	GTTAAC	1 cut(s)	540
Kzo9I	GATC	2 cut(s)	99, 507
LmnI	GCTCC	2 cut(s)	138, 315
LpnPI	CCDG	4 cut(s)	27, 101, 120, 486
LweI	GCATC	1 cut(s)	223
MaeI	CTAG	1 cut(s)	237
MaeII	ACGT	1 cut(s)	542
MaeIII	GTNAC	3 cut(s)	64, 188, 409
MalI	GATC	2 cut(s)	101, 509
MbiI	CCGCTC	1 cut(s)	170
MboI	GATC	2 cut(s)	99, 507
MboII	GAAGA	1 cut(s)	362
MflI	RGATCY	1 cut(s)	99
MluCI	AATT	6 cut(s)	111, 242, 358, 426, 462, 528
MlyI	GAGTC	1 cut(s)	29
MnlI	CCTC	5 cut(s)	95, 177, 299, 386, 507
MroXI	GAANNNNTTC	1 cut(s)	369
MseI	TTAA	3 cut(s)	531, 539, 546
MslI	CAYNNNNRTG	1 cut(s)	179
MspA1I	CMGCKG	1 cut(s)	556
Mva1269I	GAATGC	1 cut(s)	497
MwoI	GCNNNNNNNGC	1 cut(s)	262
NdeII	GATC	2 cut(s)	99, 507
NlaIII	CATG	3 cut(s)	196, 223, 514
NlaIV	GGNNCC	2 cut(s)	101, 120
NmuCI	GTSAC	3 cut(s)	64, 188, 409
PagI	TCATGA	1 cut(s)	510
PctI	GAATGC	1 cut(s)	497
PdmI	GAANNNNTTC	1 cut(s)	369
PfeI	GAWTC	1 cut(s)	327
PkrI	GCNGC	1 cut(s)	558
PleI	GAGTC	1 cut(s)	29
PpsI	GAGTC	1 cut(s)	29
PshBI	ATTAAT	1 cut(s)	531
Psp1406I	AACGTT	1 cut(s)	542
PspN4I	GGNNCC	2 cut(s)	101, 120
PsuI	RGATCY	1 cut(s)	99
RsaI	GTAC	1 cut(s)	218
RsaNI	GTAC	1 cut(s)	217
RseI	CAYNNNNRTG	1 cut(s)	179
SaqAI	TTAA	3 cut(s)	531, 539, 546
SatI	GCNGC	1 cut(s)	557
Sau3AI	GATC	2 cut(s)	99, 507
SchI	GAGTC	1 cut(s)	29
SfaNI	GCATC	1 cut(s)	223
SmiMI	CAYNNNNRTG	1 cut(s)	179
Sse9I	AATT	6 cut(s)	111, 242, 358, 426, 462, 528
SsiI	CCGC	2 cut(s)	168, 556
SspI	AATATT	1 cut(s)	160
SspMI	CTAG	1 cut(s)	237
TaiI	ACGT	1 cut(s)	545
TaqI	TCGA	2 cut(s)	5, 484
TasI	AATT	6 cut(s)	111, 242, 358, 426, 462, 528
TatI	WGTACW	1 cut(s)	216
TauI	GCSGC	1 cut(s)	559
TfiI	GAWTC	1 cut(s)	327
Tru1I	TTAA	3 cut(s)	531, 539, 546
Tru9I	TTAA	3 cut(s)	531, 539, 546
TseFI	GTSAC	3 cut(s)	64, 188, 409
Tsp45I	GTSAC	3 cut(s)	64, 188, 409
TspDTI	ATGAA	1 cut(s)	509
TspGWI	ACGGA	1 cut(s)	83
VspI	ATTAAT	1 cut(s)	531
XmnI	GAANNNNTTC	1 cut(s)	369
XspI	CTAG	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.