Rmu_sc0004304.1_g000021

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004304.1
OG0016468
Physical Location & Seq
Reverse (-)
69555 .. 69979
425 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004304.1_g000021.1.cds

Sequence Viewer

Length: 324 bp
atgctcggactaagagcgtccgcacctaacccggatcgtgtgttcgtgcgaacacctacaaagtatgctcaagcagttatcttgatgcgacgccatatggacaaggcactcagattggagtatatgtcgatcaaggatgcaagagagctatgggtagcgctagaagagcattttggcaatgtacaagattccctcctccctgacttgaaggttcagtggaacaatctgcgctttgctgatttcaagtctgttgctgaatataattcagaagctctttgcctacagtccatgttgaggttttgtggacaacctatcacagagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

107

Amino Acids

12.42

Weight (kDa)

7.8

Isoelectric Point (pI)

52.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 21
AclWI GGATC 1 cut(s) 42
AcyI GRCGYC 1 cut(s) 91
AfaI GTAC 1 cut(s) 183
AfeI AGCGCT 1 cut(s) 159
AfiI CCNNNNNNNGG 1 cut(s) 294
AgsI TTSAA 2 cut(s) 208, 244
AjuI GAANNNNNNNTTGG 2 cut(s) 156, 188
AloI GAACNNNNNNTCC 2 cut(s) 26, 58
AluBI AGCT 2 cut(s) 148, 272
AluI AGCT 2 cut(s) 148, 272
AlwI GGATC 1 cut(s) 42
Aor51HI AGCGCT 1 cut(s) 159
AspLEI GCGC 2 cut(s) 160, 231
AsuC2I CCSGG 1 cut(s) 32
BcnI CCSGG 1 cut(s) 32
BfaI CTAG 1 cut(s) 161
BfmI CTRYAG 1 cut(s) 281
BfoI RGCGCY 1 cut(s) 161
Bme1390I CCNGG 1 cut(s) 32
BmrFI CCNGG 1 cut(s) 32
BmsI GCATC 2 cut(s) 75, 127
BpuEI CTTGAG 1 cut(s) 54
BpuMI CCSGG 1 cut(s) 32
BsaHI GRCGYC 1 cut(s) 91
BsaXI ACNNNNNCTCC 2 cut(s) 110, 140
Bsc4I CCNNNNNNNGG 1 cut(s) 294
Bse3DI GCAATG 1 cut(s) 184
BseGI GGATG 1 cut(s) 142
BseLI CCNNNNNNNGG 1 cut(s) 294
BseMI GCAATG 1 cut(s) 184
BseMII CTCAG 1 cut(s) 124
BseRI GAGGAG 1 cut(s) 185
BsiSI CCGG 1 cut(s) 32
BslI CCNNNNNNNGG 1 cut(s) 294
Bsp1407I TGTACA 1 cut(s) 181
Bsp143I GATC 2 cut(s) 34, 129
BspACI CCGC 1 cut(s) 21
BspCNI CTCAG 1 cut(s) 123
BspPI GGATC 1 cut(s) 42
BspQI GCTCTTC 1 cut(s) 159
BsrDI GCAATG 1 cut(s) 184
BsrGI TGTACA 1 cut(s) 181
BssMI GATC 2 cut(s) 34, 129
BssNI GRCGYC 1 cut(s) 91
Bst4CI ACNGT 1 cut(s) 285
Bst6I CTCTTC 1 cut(s) 159
BstACI GRCGYC 1 cut(s) 91
BstAUI TGTACA 1 cut(s) 181
BstDEI CTNAG 2 cut(s) 11, 110
BstF5I GGATG 1 cut(s) 142
BstH2I RGCGCY 1 cut(s) 161
BstHHI GCGC 2 cut(s) 160, 231
BstKTI GATC 2 cut(s) 37, 132
BstMBI GATC 2 cut(s) 34, 129
BstMWI GCNNNNNNNGC 1 cut(s) 166
BstSCI CCNGG 1 cut(s) 30
BstSFI CTRYAG 1 cut(s) 281
BtsCI GGATG 1 cut(s) 142
BtsIMutI CAGTG 1 cut(s) 221
CfoI GCGC 2 cut(s) 160, 231
CseI GACGC 2 cut(s) 6, 99
Csp6I GTAC 1 cut(s) 182
CviAII CATG 1 cut(s) 289
CviJI RGCY 2 cut(s) 148, 272
CviKI_1 RGCY 2 cut(s) 148, 272
CviQI GTAC 1 cut(s) 182
DdeI CTNAG 2 cut(s) 11, 110
DpnI GATC 2 cut(s) 36, 131
DpnII GATC 2 cut(s) 34, 129
Eam1104I CTCTTC 1 cut(s) 159
EarI CTCTTC 1 cut(s) 159
Eco47III AGCGCT 1 cut(s) 159
FaeI CATG 1 cut(s) 292
FaiI YATR 8 cut(s) 66, 96, 98, 123, 125, 151, 261, 290
FatI CATG 1 cut(s) 288
FauNDI CATATG 1 cut(s) 96
FokI GGATG 1 cut(s) 149
FspBI CTAG 1 cut(s) 161
GlaI GCGC 2 cut(s) 159, 230
HaeII RGCGCY 1 cut(s) 161
HapII CCGG 1 cut(s) 32
HgaI GACGC 2 cut(s) 6, 99
HhaI GCGC 2 cut(s) 160, 231
Hin1I GRCGYC 1 cut(s) 91
Hin1II CATG 1 cut(s) 292
Hin6I GCGC 2 cut(s) 158, 229
HinP1I GCGC 2 cut(s) 158, 229
HinfI GANTC 1 cut(s) 188
HpaII CCGG 1 cut(s) 32
Hpy166II GTNNAC 1 cut(s) 305
Hpy188I TCNGA 3 cut(s) 8, 113, 268
Hpy188III TCNNGA 1 cut(s) 82
Hpy8I GTNNAC 1 cut(s) 305
Hpy99I CGWCG 1 cut(s) 93
HpyAV CCTTC 1 cut(s) 202
HpyCH4III ACNGT 1 cut(s) 285
HpyCH4V TGCA 1 cut(s) 140
HpyF10VI GCNNNNNNNGC 1 cut(s) 166
HpyF3I CTNAG 2 cut(s) 11, 110
Hsp92I GRCGYC 1 cut(s) 91
Hsp92II CATG 1 cut(s) 292
HspAI GCGC 2 cut(s) 158, 229
Kzo9I GATC 2 cut(s) 34, 129
LguI GCTCTTC 1 cut(s) 159
LpnPI CCDG 2 cut(s) 45, 213
LweI GCATC 2 cut(s) 75, 127
MaeI CTAG 1 cut(s) 161
MalI GATC 2 cut(s) 36, 131
MboI GATC 2 cut(s) 34, 129
MboII GAAGA 1 cut(s) 176
MluCI AATT 1 cut(s) 262
MnlI CCTC 3 cut(s) 203, 206, 288
MspI CCGG 1 cut(s) 32
MspR9I CCNGG 1 cut(s) 32
MwoI GCNNNNNNNGC 1 cut(s) 166
NciI CCSGG 1 cut(s) 32
NdeI CATATG 1 cut(s) 96
NdeII GATC 2 cut(s) 34, 129
NlaIII CATG 1 cut(s) 292
PciSI GCTCTTC 1 cut(s) 159
PfeI GAWTC 1 cut(s) 188
RsaI GTAC 1 cut(s) 183
RsaNI GTAC 1 cut(s) 182
SapI GCTCTTC 1 cut(s) 159
Sau3AI GATC 2 cut(s) 34, 129
ScrFI CCNGG 1 cut(s) 32
SetI ASST 7 cut(s) 28, 58, 150, 213, 274, 299, 313
SfaNI GCATC 2 cut(s) 75, 127
SfcI CTRYAG 1 cut(s) 281
SmlI CTYRAG 1 cut(s) 69
SmoI CTYRAG 1 cut(s) 69
Sse9I AATT 1 cut(s) 262
SsiI CCGC 1 cut(s) 21
SspMI CTAG 1 cut(s) 161
StyD4I CCNGG 1 cut(s) 30
TaaI ACNGT 1 cut(s) 285
TaqI TCGA 1 cut(s) 128
TasI AATT 1 cut(s) 262
TatI WGTACW 1 cut(s) 181
TfiI GAWTC 1 cut(s) 188
TscAI CASTG 1 cut(s) 221
TspRI CASTG 1 cut(s) 221
XspI CTAG 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.