Rmu_sc0017231.1_g000006

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0017231.1
OG0016468
Physical Location & Seq
Reverse (-)
10037 .. 11141
1105 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0017231.1_g000006.1.cds

Sequence Viewer

Length: 837 bp
atgtcaaagctgaagcttgactttcctatacttgactcaactggctcagaatatcatagttgggtcacggatgttgaggatcatctcacttcaaaagggaacctacccgtaattcaagcaccaaaccctgcgcttatttttgagcgtacggctacaaataatgccaccgctctcatattgatgagacgtcacatggataaatcactccgattggagtacatggcaatcaaggatgctagagaattatgggttgtgctagaagagcgatttggtaatgtcaaggataccctcctccccgacttgaaagttcaatggggcaatctacgattcgccaacttcaagtctgtagctgaatataattcagaagttctacgcctcaaaacaatgttggggttctgtggacaacccgtcacagagaaagagctaattgagaaaattctctccaccttccccgtctcagcaattttgctatcaaagcaatatagaactgaatacaatactggacgtatcacgggacgtagaggagcctcccaaggccttgggaatggcgccaactcctctaggggacgccacccaagtgcaaacaatgcacctcaattaaggggaggaaatcacaatgacatgtttcatcgatgtggatcaagtgagcattggttcaagcaatgcaatgcaaacaaacaattagctgcgcattataaagcatatagagactttagagagcatgaagcctatcttgccgaagaagaagaagatggtgatgatgtcaacgtcaatctcactatagcggacttcaaatctgacaaagaattgcacaaggatgctgcagattttgattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

278

Amino Acids

31.56

Weight (kDa)

6.38

Isoelectric Point (pI)

39.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 696
AatII GACGTC 1 cut(s) 190
Acc16I TGCGCA 1 cut(s) 690
AccB1I GGYRCC 1 cut(s) 548
AccBSI CCGCTC 1 cut(s) 170
AciI CCGC 2 cut(s) 168, 785
AclWI GGATC 2 cut(s) 87, 646
AcsI RAATTY 1 cut(s) 435
AcuI CTGAAG 1 cut(s) 32
AcyI GRCGYC 3 cut(s) 187, 549, 568
AfaI GTAC 2 cut(s) 148, 218
AflIII ACRYGT 1 cut(s) 621
AgsI TTSAA 7 cut(s) 93, 116, 304, 311, 340, 658, 793
AhdI GACNNNNNGTC 1 cut(s) 407
AjuI GAANNNNNNNTTGG 2 cut(s) 252, 284
AleI CACNNNNGTG 1 cut(s) 576
AluBI AGCT 5 cut(s) 10, 16, 350, 424, 686
AluI AGCT 5 cut(s) 10, 16, 350, 424, 686
Alw26I GTCTC 3 cut(s) 178, 460, 702
AlwI GGATC 2 cut(s) 87, 646
AoxI GGCC 1 cut(s) 535
ApeKI GCWGC 2 cut(s) 686, 821
ApoI RAATTY 1 cut(s) 435
AspLEI GCGC 3 cut(s) 133, 551, 691
AsuHPI GGTGA 1 cut(s) 767
BanI GGYRCC 1 cut(s) 548
BbvI GCAGC 2 cut(s) 673, 808
BccI CCATC 1 cut(s) 746
BceAI ACGGC 1 cut(s) 165
BciVI GTATCC 1 cut(s) 277
BcoDI GTCTC 3 cut(s) 178, 460, 702
BfaI CTAG 3 cut(s) 237, 257, 561
BfmI CTRYAG 3 cut(s) 345, 780, 822
BfoI RGCGCY 1 cut(s) 552
BfuI GTATCC 1 cut(s) 277
BisI GCNGC 2 cut(s) 687, 822
BlsI GCNGC 2 cut(s) 688, 823
BmeRI GACNNNNNGTC 1 cut(s) 407
BmiI GGNNCC 3 cut(s) 101, 526, 550
BmsI GCATC 2 cut(s) 223, 808
Bsa29I ATCGAT 1 cut(s) 631
BsaBI GATNNNNATC 1 cut(s) 637
BsaHI GRCGYC 3 cut(s) 187, 549, 568
BsaJI CCNNGG 2 cut(s) 532, 538
Bse1I ACTGG 2 cut(s) 46, 505
Bse3DI GCAATG 2 cut(s) 668, 673
Bse8I GATNNNNATC 1 cut(s) 637
BseCI ATCGAT 1 cut(s) 631
BseDI CCNNGG 2 cut(s) 532, 538
BseGI GGATG 3 cut(s) 76, 238, 823
BseJI GATNNNNATC 1 cut(s) 637
BseMI GCAATG 2 cut(s) 668, 673
BseMII CTCAG 2 cut(s) 60, 471
BseNI ACTGG 2 cut(s) 46, 505
BseRI GAGGAG 3 cut(s) 281, 537, 547
BseXI GCAGC 2 cut(s) 673, 808
BshFI GGCC 1 cut(s) 537
BshNI GGYRCC 1 cut(s) 548
BshVI ATCGAT 1 cut(s) 631
BsiWI CGTACG 1 cut(s) 146
BslFI GGGAC 2 cut(s) 528, 579
BsmAI GTCTC 3 cut(s) 178, 460, 702
BsmBI CGTCTC 2 cut(s) 178, 460
BsmFI GGGAC 2 cut(s) 528, 579
BsnI GGCC 1 cut(s) 537
Bsp143I GATC 2 cut(s) 79, 638
BspACI CCGC 2 cut(s) 168, 785
BspANI GGCC 1 cut(s) 537
BspCNI CTCAG 2 cut(s) 59, 470
BspDI ATCGAT 1 cut(s) 631
BspLI GGNNCC 3 cut(s) 101, 526, 550
BspMAI CTGCAG 1 cut(s) 826
BspPI GGATC 2 cut(s) 87, 646
BspQI GCTCTTC 1 cut(s) 255
BspT107I GGYRCC 1 cut(s) 548
BsrBI CCGCTC 1 cut(s) 170
BsrDI GCAATG 2 cut(s) 668, 673
BsrI ACTGG 2 cut(s) 46, 505
BssECI CCNNGG 2 cut(s) 532, 538
BssMI GATC 2 cut(s) 79, 638
BssNI GRCGYC 3 cut(s) 187, 549, 568
BssT1I CCWWGG 2 cut(s) 532, 538
Bst6I CTCTTC 1 cut(s) 255
BstACI GRCGYC 3 cut(s) 187, 549, 568
BstAPI GCANNNNNTGC 1 cut(s) 587
BstDEI CTNAG 2 cut(s) 46, 457
BstF5I GGATG 3 cut(s) 76, 238, 823
BstH2I RGCGCY 1 cut(s) 552
BstHHI GCGC 3 cut(s) 133, 551, 691
BstKTI GATC 2 cut(s) 82, 641
BstMAI GTCTC 3 cut(s) 178, 460, 702
BstMBI GATC 2 cut(s) 79, 638
BstMWI GCNNNNNNNGC 4 cut(s) 262, 475, 587, 734
BstNSI RCATGY 1 cut(s) 625
BstSFI CTRYAG 3 cut(s) 345, 780, 822
BstV1I GCAGC 2 cut(s) 673, 808
BstXI CCANNNNNNTGG 1 cut(s) 539
Bsu15I ATCGAT 1 cut(s) 631
BsuI GTATCC 1 cut(s) 277
BsuRI GGCC 1 cut(s) 537
BsuTUI ATCGAT 1 cut(s) 631
BtsCI GGATG 3 cut(s) 76, 238, 823
CfoI GCGC 3 cut(s) 133, 551, 691
ClaI ATCGAT 1 cut(s) 631
CseI GACGC 1 cut(s) 576
Csp6I GTAC 2 cut(s) 147, 217
CviAII CATG 4 cut(s) 193, 220, 622, 722
CviQI GTAC 2 cut(s) 147, 217
DdeI CTNAG 2 cut(s) 46, 457
DinI GGCGCC 1 cut(s) 550
DpnI GATC 2 cut(s) 81, 640
DpnII GATC 2 cut(s) 79, 638
DriI GACNNNNNGTC 1 cut(s) 407
Eam1104I CTCTTC 1 cut(s) 255
Eam1105I GACNNNNNGTC 1 cut(s) 407
EarI CTCTTC 1 cut(s) 255
Eco130I CCWWGG 2 cut(s) 532, 538
Eco147I AGGCCT 1 cut(s) 537
Eco57I CTGAAG 1 cut(s) 32
EcoT14I CCWWGG 2 cut(s) 532, 538
EgeI GGCGCC 1 cut(s) 550
EheI GGCGCC 1 cut(s) 550
ErhI CCWWGG 2 cut(s) 532, 538
Esp3I CGTCTC 2 cut(s) 178, 460
FaeI CATG 4 cut(s) 196, 223, 625, 725
FalI AAGNNNNNCTT 3 cut(s) 37, 717, 749
FaqI GGGAC 2 cut(s) 528, 579
FatI CATG 4 cut(s) 192, 219, 621, 721
Fnu4HI GCNGC 2 cut(s) 687, 822
FokI GGATG 3 cut(s) 83, 245, 830
Fsp4HI GCNGC 2 cut(s) 687, 822
FspBI CTAG 3 cut(s) 237, 257, 561
FspI TGCGCA 1 cut(s) 690
GlaI GCGC 3 cut(s) 132, 550, 690
GluI GCNGC 2 cut(s) 687, 822
HaeII RGCGCY 1 cut(s) 552
HaeIII GGCC 1 cut(s) 537
HgaI GACGC 1 cut(s) 576
HhaI GCGC 3 cut(s) 133, 551, 691
Hin1I GRCGYC 3 cut(s) 187, 549, 568
Hin1II CATG 4 cut(s) 196, 223, 625, 725
Hin6I GCGC 3 cut(s) 131, 549, 689
HinP1I GCGC 3 cut(s) 131, 549, 689
HincII GTYRAC 1 cut(s) 766
HindII GTYRAC 1 cut(s) 766
HindIII AAGCTT 1 cut(s) 14
HinfI GANTC 2 cut(s) 35, 327
HphI GGTGA 1 cut(s) 767
Hpy166II GTNNAC 2 cut(s) 401, 766
Hpy188I TCNGA 4 cut(s) 49, 209, 364, 799
Hpy8I GTNNAC 2 cut(s) 401, 766
HpyAV CCTTC 1 cut(s) 457
HpyCH4IV ACGT 4 cut(s) 187, 505, 517, 768
HpyCH4V TGCA 6 cut(s) 581, 590, 666, 671, 811, 824
HpyF10VI GCNNNNNNNGC 4 cut(s) 262, 475, 587, 734
HpyF3I CTNAG 2 cut(s) 46, 457
HpySE526I ACGT 4 cut(s) 187, 505, 517, 768
Hsp92I GRCGYC 3 cut(s) 187, 549, 568
Hsp92II CATG 4 cut(s) 196, 223, 625, 725
HspAI GCGC 3 cut(s) 131, 549, 689
KasI GGCGCC 1 cut(s) 548
Kzo9I GATC 2 cut(s) 79, 638
LguI GCTCTTC 1 cut(s) 255
LmnI GCTCC 1 cut(s) 524
LpnPI CCDG 3 cut(s) 27, 141, 486
Lsp1109I GCAGC 2 cut(s) 673, 808
LweI GCATC 2 cut(s) 223, 808
MaeI CTAG 3 cut(s) 237, 257, 561
MaeII ACGT 4 cut(s) 187, 505, 517, 768
MaeIII GTNAC 3 cut(s) 64, 188, 409
MalI GATC 2 cut(s) 81, 640
MbiI CCGCTC 1 cut(s) 170
MboI GATC 2 cut(s) 79, 638
MboII GAAGA 5 cut(s) 272, 752, 755, 758, 761
MluCI AATT 9 cut(s) 111, 242, 358, 426, 435, 462, 596, 680, 806
Mly113I GGCGCC 1 cut(s) 549
MlyI GAGTC 1 cut(s) 29
MnlI CCTC 9 cut(s) 70, 299, 302, 386, 515, 538, 568, 599, 603
MseI TTAA 1 cut(s) 599
MslI CAYNNNNRTG 4 cut(s) 179, 576, 633, 816
MwoI GCNNNNNNNGC 4 cut(s) 262, 475, 587, 734
NarI GGCGCC 1 cut(s) 549
NdeII GATC 2 cut(s) 79, 638
NlaIII CATG 4 cut(s) 196, 223, 625, 725
NlaIV GGNNCC 3 cut(s) 101, 526, 550
NmuCI GTSAC 3 cut(s) 64, 188, 409
NsbI TGCGCA 1 cut(s) 690
NspI RCATGY 1 cut(s) 625
OliI CACNNNNGTG 1 cut(s) 576
PceI AGGCCT 1 cut(s) 537
PciI ACATGT 1 cut(s) 621
PciSI GCTCTTC 1 cut(s) 255
PfeI GAWTC 1 cut(s) 327
Pfl23II CGTACG 1 cut(s) 146
PkrI GCNGC 2 cut(s) 688, 823
PleI GAGTC 1 cut(s) 29
PluTI GGCGCC 1 cut(s) 552
PpsI GAGTC 1 cut(s) 29
PscI ACATGT 1 cut(s) 621
PsiI TTATAA 1 cut(s) 696
PspLI CGTACG 1 cut(s) 146
PspN4I GGNNCC 3 cut(s) 101, 526, 550
PstI CTGCAG 1 cut(s) 826
RsaI GTAC 2 cut(s) 148, 218
RsaNI GTAC 2 cut(s) 147, 217
RseI CAYNNNNRTG 4 cut(s) 179, 576, 633, 816
SapI GCTCTTC 1 cut(s) 255
SaqAI TTAA 1 cut(s) 599
SatI GCNGC 2 cut(s) 687, 822
Sau3AI GATC 2 cut(s) 79, 638
SchI GAGTC 1 cut(s) 29
SfaNI GCATC 2 cut(s) 223, 808
SfcI CTRYAG 3 cut(s) 345, 780, 822
SfoI GGCGCC 1 cut(s) 550
SmiMI CAYNNNNRTG 4 cut(s) 179, 576, 633, 816
Sse9I AATT 9 cut(s) 111, 242, 358, 426, 435, 462, 596, 680, 806
SseBI AGGCCT 1 cut(s) 537
SsiI CCGC 2 cut(s) 168, 785
SspDI GGCGCC 1 cut(s) 548
SspMI CTAG 3 cut(s) 237, 257, 561
StuI AGGCCT 1 cut(s) 537
StyI CCWWGG 2 cut(s) 532, 538
TaiI ACGT 4 cut(s) 190, 508, 520, 771
TaqI TCGA 1 cut(s) 631
TasI AATT 9 cut(s) 111, 242, 358, 426, 435, 462, 596, 680, 806
TatI WGTACW 1 cut(s) 216
TfiI GAWTC 1 cut(s) 327
Tru1I TTAA 1 cut(s) 599
Tru9I TTAA 1 cut(s) 599
TseFI GTSAC 3 cut(s) 64, 188, 409
TseI GCWGC 2 cut(s) 686, 821
Tsp45I GTSAC 3 cut(s) 64, 188, 409
TspDTI ATGAA 2 cut(s) 617, 738
TspGWI ACGGA 1 cut(s) 83
XapI RAATTY 1 cut(s) 435
XceI RCATGY 1 cut(s) 625
XspI CTAG 3 cut(s) 237, 257, 561
ZraI GACGTC 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.