Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000762.1

Orthogroup ID

OG0016468

Physical Location & Seq

Genomic Coordinates Reverse (-)

138349 .. 138873

Gene Structure 525 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000762.1_g000041.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

atgtcgaagccgagacttgactttcctatacttgactcaactggctcggaatatcatagttgggtcacagatgttgagaaccacctcacttcacaagggatccttcctataattcaggcaccgaaccctgatatcctctttgagcctacggctacaaagaatgccctagccctaatcttgatgagacgccacatggataaatcactccgaatggagtacatggtgatcaaggacgcaagaaagttatgggttacgcttgaagagctctttgccaacgtcaaggactccctcctccccgacttgaaagttcaatggagcaatctacgattcgccgacttcaagtccgtagcagaatttaattctgaagctctatgcctcaaaactatgttggggttctatggacaaactgtcacagagcaagagctaattgagaaaactctctccaccttccccgtctcaggaatcttggtatcaaagcaataccgaaatgaatacaatgctggacgaatcacgaagtttcattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Retrotran_gag_2 zf-CCHC

Protein Analysis

174

Amino Acids

20.0

Weight (kDa)

6.43

Isoelectric Point (pI)

42.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016468)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8375535.1_g000001 Rmu_sc0000332.1_g000051 Rmu_sc0000762.1_g000041 Rmu_sc0001600.1_g000002 Rmu_sc0002071.1_g000021 Rmu_sc0002161.1_g000008 Rmu_sc0002350.1_g000011 Rmu_sc0002983.1_g000022 Rmu_sc0003160.1_g000007 Rmu_sc0004248.1_g000014 Rmu_sc0004304.1_g000021 Rmu_sc0005069.1_g000021 Rmu_sc0013350.1_g000006 Rmu_sc0017231.1_g000006
rosa_samantha	Rh3BG272100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	118
AclWI	GGATC	2 cut(s)	94, 107
AcsI	RAATTY	1 cut(s)	353
AcuI	CTGAAG	1 cut(s)	384
AcyI	GRCGYC	1 cut(s)	187
AfaI	GTAC	1 cut(s)	218
AfiI	CCNNNNNNNGG	1 cut(s)	458
AgsI	TTSAA	4 cut(s)	260, 304, 311, 340
AhdI	GACNNNNNGTC	2 cut(s)	340, 407
AluBI	AGCT	3 cut(s)	265, 368, 424
AluI	AGCT	3 cut(s)	265, 368, 424
Alw21I	GWGCWC	1 cut(s)	267
Alw26I	GTCTC	3 cut(s)	7, 178, 460
AlwI	GGATC	2 cut(s)	94, 107
ApoI	RAATTY	1 cut(s)	353
AsuHPI	GGTGA	1 cut(s)	235
BamHI	GGATCC	1 cut(s)	99
BanI	GGYRCC	1 cut(s)	118
BanII	GRGCYC	1 cut(s)	267
Bbv12I	GWGCWC	1 cut(s)	267
BceAI	ACGGC	1 cut(s)	165
BclI	TGATCA	1 cut(s)	225
BcoDI	GTCTC	3 cut(s)	7, 178, 460
BfaI	CTAG	1 cut(s)	167
BmeRI	GACNNNNNGTC	2 cut(s)	340, 407
BmiI	GGNNCC	2 cut(s)	101, 120
BsaHI	GRCGYC	1 cut(s)	187
Bsc4I	CCNNNNNNNGG	1 cut(s)	458
Bse1I	ACTGG	1 cut(s)	46
BseLI	CCNNNNNNNGG	1 cut(s)	458
BseMII	CTCAG	1 cut(s)	471
BseNI	ACTGG	1 cut(s)	46
BseRI	GAGGAG	1 cut(s)	281
BshNI	GGYRCC	1 cut(s)	118
BsiHKAI	GWGCWC	1 cut(s)	267
BslI	CCNNNNNNNGG	1 cut(s)	458
BsmAI	GTCTC	3 cut(s)	7, 178, 460
BsmBI	CGTCTC	2 cut(s)	178, 460
BsmI	GAATGC	1 cut(s)	166
Bsp1286I	GDGCHC	1 cut(s)	267
Bsp143I	GATC	2 cut(s)	99, 225
BspCNI	CTCAG	1 cut(s)	470
BspLI	GGNNCC	2 cut(s)	101, 120
BspPI	GGATC	2 cut(s)	94, 107
BspQI	GCTCTTC	1 cut(s)	255
BspT107I	GGYRCC	1 cut(s)	118
BsrI	ACTGG	1 cut(s)	46
BssMI	GATC	2 cut(s)	99, 225
BssNI	GRCGYC	1 cut(s)	187
Bst4CI	ACNGT	1 cut(s)	409
Bst6I	CTCTTC	1 cut(s)	255
BstACI	GRCGYC	1 cut(s)	187
BstDEI	CTNAG	1 cut(s)	457
BstKTI	GATC	2 cut(s)	102, 228
BstMAI	GTCTC	3 cut(s)	7, 178, 460
BstMBI	GATC	2 cut(s)	99, 225
BstMWI	GCNNNNNNNGC	1 cut(s)	262
BstX2I	RGATCY	1 cut(s)	99
BstYI	RGATCY	1 cut(s)	99
CseI	GACGC	2 cut(s)	195, 242
Csp6I	GTAC	1 cut(s)	217
CviAII	CATG	2 cut(s)	193, 220
CviJI	RGCY	8 cut(s)	10, 45, 145, 152, 170, 265, 368, 424
CviKI_1	RGCY	8 cut(s)	10, 45, 145, 152, 170, 265, 368, 424
CviQI	GTAC	1 cut(s)	217
DdeI	CTNAG	1 cut(s)	457
DpnI	GATC	2 cut(s)	101, 227
DpnII	GATC	2 cut(s)	99, 225
DriI	GACNNNNNGTC	2 cut(s)	340, 407
Eam1104I	CTCTTC	1 cut(s)	255
Eam1105I	GACNNNNNGTC	2 cut(s)	340, 407
EarI	CTCTTC	1 cut(s)	255
Ecl136II	GAGCTC	1 cut(s)	265
Eco24I	GRGCYC	1 cut(s)	267
Eco32I	GATATC	1 cut(s)	133
Eco53kI	GAGCTC	1 cut(s)	265
Eco57I	CTGAAG	1 cut(s)	384
EcoICRI	GAGCTC	1 cut(s)	265
EcoRV	GATATC	1 cut(s)	133
EcoT38I	GRGCYC	1 cut(s)	267
Esp3I	CGTCTC	2 cut(s)	178, 460
FaeI	CATG	2 cut(s)	196, 223
FaiI	YATR	9 cut(s)	29, 57, 110, 194, 221, 247, 373, 386, 399
FalI	AAGNNNNNCTT	2 cut(s)	87, 119
FatI	CATG	2 cut(s)	192, 219
FbaI	TGATCA	1 cut(s)	225
FriOI	GRGCYC	1 cut(s)	267
FspBI	CTAG	1 cut(s)	167
HgaI	GACGC	2 cut(s)	195, 242
Hin1I	GRCGYC	1 cut(s)	187
Hin1II	CATG	2 cut(s)	196, 223
HinfI	GANTC	5 cut(s)	35, 284, 327, 462, 507
HphI	GGTGA	1 cut(s)	235
Hpy188I	TCNGA	3 cut(s)	49, 209, 364
Hpy188III	TCNNGA	3 cut(s)	178, 459, 511
HpyAV	CCTTC	2 cut(s)	113, 457
HpyCH4III	ACNGT	1 cut(s)	409
HpyCH4IV	ACGT	1 cut(s)	276
HpyF10VI	GCNNNNNNNGC	1 cut(s)	262
HpyF3I	CTNAG	1 cut(s)	457
HpySE526I	ACGT	1 cut(s)	276
Hsp92I	GRCGYC	1 cut(s)	187
Hsp92II	CATG	2 cut(s)	196, 223
Ksp22I	TGATCA	1 cut(s)	225
Kzo9I	GATC	2 cut(s)	99, 225
LguI	GCTCTTC	1 cut(s)	255
LmnI	GCTCC	1 cut(s)	315
LpnPI	CCDG	5 cut(s)	27, 101, 141, 444, 486
MaeI	CTAG	1 cut(s)	167
MaeII	ACGT	1 cut(s)	276
MaeIII	GTNAC	3 cut(s)	64, 250, 409
MalI	GATC	2 cut(s)	101, 227
MboI	GATC	2 cut(s)	99, 225
MboII	GAAGA	1 cut(s)	272
MflI	RGATCY	1 cut(s)	99
MhlI	GDGCHC	1 cut(s)	267
MluCI	AATT	4 cut(s)	111, 353, 358, 426
MlyI	GAGTC	2 cut(s)	29, 278
MnlI	CCTC	5 cut(s)	95, 146, 299, 302, 386
MseI	TTAA	1 cut(s)	357
Mva1269I	GAATGC	1 cut(s)	166
MwoI	GCNNNNNNNGC	1 cut(s)	262
NdeII	GATC	2 cut(s)	99, 225
NlaIII	CATG	2 cut(s)	196, 223
NlaIV	GGNNCC	2 cut(s)	101, 120
NmeAIII	GCCGAG	1 cut(s)	36
NmuCI	GTSAC	2 cut(s)	64, 409
PciSI	GCTCTTC	1 cut(s)	255
PctI	GAATGC	1 cut(s)	166
PfeI	GAWTC	3 cut(s)	327, 462, 507
PleI	GAGTC	2 cut(s)	29, 278
PpsI	GAGTC	2 cut(s)	29, 278
Psp124BI	GAGCTC	1 cut(s)	267
PspN4I	GGNNCC	2 cut(s)	101, 120
PsuI	RGATCY	1 cut(s)	99
RsaI	GTAC	1 cut(s)	218
RsaNI	GTAC	1 cut(s)	217
SacI	GAGCTC	1 cut(s)	267
SapI	GCTCTTC	1 cut(s)	255
SaqAI	TTAA	1 cut(s)	357
Sau3AI	GATC	2 cut(s)	99, 225
SchI	GAGTC	2 cut(s)	29, 278
SduI	GDGCHC	1 cut(s)	267
SetI	ASST	6 cut(s)	87, 267, 279, 370, 426, 449
Sse9I	AATT	4 cut(s)	111, 353, 358, 426
SspMI	CTAG	1 cut(s)	167
SstI	GAGCTC	1 cut(s)	267
TaaI	ACNGT	1 cut(s)	409
TaiI	ACGT	1 cut(s)	279
TaqI	TCGA	1 cut(s)	5
TasI	AATT	4 cut(s)	111, 353, 358, 426
TatI	WGTACW	1 cut(s)	216
TfiI	GAWTC	3 cut(s)	327, 462, 507
Tru1I	TTAA	1 cut(s)	357
Tru9I	TTAA	1 cut(s)	357
TseFI	GTSAC	2 cut(s)	64, 409
Tsp45I	GTSAC	2 cut(s)	64, 409
TspDTI	ATGAA	2 cut(s)	504, 509
TspGWI	ACGGA	1 cut(s)	334
XapI	RAATTY	1 cut(s)	353
XspI	CTAG	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.