Rmu_sc0002983.1_g000022

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002983.1
OG0016468
Physical Location & Seq
Forward (+)
94378 .. 95210
833 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002983.1_g000022.1.cds

Sequence Viewer

Length: 663 bp
atgtcgaagccaaagcttgactttcctattcttgactcaactggctcggaatatcatagttgggtcacggatgttgagaaccatctcacttcaaaagggatcctacctgtaattcaagcaccaaatcctgacctcttatttaagcgtacggctacaaataatgccaccgctctcatcctgatgagacgccacatggataaatcgctccaattggagtacatggcaatcaaggatgctagggaattatgggttgcgctagaagagcgatttggaaacgtcaaggataccctcctccctgacttgagagttcaatggggcaatctacgattcgtcgacttcaagtctgtagctgaatataattcagaagttctacgcctcaaaaccatgttggggttctgtggacaacctgtcacagagcaagaactaattgagaaaactctctccaccttccccgtctcagctattttgctatcaaagcaatatcgaacagaattcaacactggacggatcacgagaatgaaggacgaacacgtggcaatacatgacaacatgggagaggaggccgtggggctccaggacgtggaggagccgcccaaggccgttggaatggctccaattcttctaggggacgccacccaagtgcaaataatgcacctcaattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

220

Amino Acids

24.93

Weight (kDa)

5.55

Isoelectric Point (pI)

45.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 580
AccBSI CCGCTC 1 cut(s) 170
AccI GTMKAC 1 cut(s) 333
AciI CCGC 2 cut(s) 168, 590
AclWI GGATC 3 cut(s) 94, 107, 515
AcsI RAATTY 1 cut(s) 491
AcvI CACGTG 1 cut(s) 532
AcyI GRCGYC 2 cut(s) 187, 630
AfaI GTAC 2 cut(s) 148, 218
AfiI CCNNNNNNNGG 2 cut(s) 390, 580
AflIII ACRYGT 1 cut(s) 529
AgsI TTSAA 5 cut(s) 93, 116, 311, 340, 496
AhdI GACNNNNNGTC 2 cut(s) 340, 407
AjiI CACGTC 1 cut(s) 580
AjnI CCWGG 1 cut(s) 573
AjuI GAANNNNNNNTTGG 2 cut(s) 252, 284
AleI CACNNNNGTG 1 cut(s) 638
AluBI AGCT 3 cut(s) 16, 350, 461
AluI AGCT 3 cut(s) 16, 350, 461
Alw26I GTCTC 2 cut(s) 178, 460
AlwI GGATC 3 cut(s) 94, 107, 515
AoxI GGCC 2 cut(s) 561, 597
ApoI RAATTY 1 cut(s) 491
AspLEI GCGC 1 cut(s) 256
BamHI GGATCC 1 cut(s) 99
BanII GRGCYC 1 cut(s) 573
BauI CACGAG 1 cut(s) 511
BbrPI CACGTG 1 cut(s) 532
BccI CCATC 1 cut(s) 90
BceAI ACGGC 3 cut(s) 165, 548, 584
BciT130I CCWGG 1 cut(s) 575
BciVI GTATCC 1 cut(s) 277
BcoDI GTCTC 2 cut(s) 178, 460
BfaI CTAG 3 cut(s) 237, 257, 623
BfmI CTRYAG 1 cut(s) 345
BfuI GTATCC 1 cut(s) 277
BisI GCNGC 1 cut(s) 590
BlsI GCNGC 1 cut(s) 591
Bme1390I CCNGG 1 cut(s) 575
BmeRI GACNNNNNGTC 2 cut(s) 340, 407
BmgBI CACGTC 1 cut(s) 580
BmiI GGNNCC 4 cut(s) 101, 572, 588, 612
BmrFI CCNGG 1 cut(s) 575
BmsI GCATC 1 cut(s) 223
BpmI CTGGAG 1 cut(s) 557
BpuEI CTTGAG 1 cut(s) 322
BsaAI YACGTR 1 cut(s) 532
BsaHI GRCGYC 2 cut(s) 187, 630
BsaJI CCNNGG 2 cut(s) 564, 594
Bsc4I CCNNNNNNNGG 2 cut(s) 390, 580
Bse1I ACTGG 2 cut(s) 46, 505
BseBI CCWGG 1 cut(s) 575
BseDI CCNNGG 2 cut(s) 564, 594
BseGI GGATG 3 cut(s) 76, 174, 238
BseLI CCNNNNNNNGG 2 cut(s) 390, 580
BseMII CTCAG 1 cut(s) 471
BseNI ACTGG 2 cut(s) 46, 505
BseRI GAGGAG 3 cut(s) 281, 572, 599
BshFI GGCC 2 cut(s) 563, 599
BsiWI CGTACG 1 cut(s) 146
BslFI GGGAC 1 cut(s) 641
BslI CCNNNNNNNGG 2 cut(s) 390, 580
BsmAI GTCTC 2 cut(s) 178, 460
BsmBI CGTCTC 2 cut(s) 178, 460
BsmFI GGGAC 1 cut(s) 641
BsnI GGCC 2 cut(s) 563, 599
Bsp1286I GDGCHC 1 cut(s) 573
Bsp143I GATC 2 cut(s) 99, 507
BspACI CCGC 2 cut(s) 168, 590
BspANI GGCC 2 cut(s) 563, 599
BspCNI CTCAG 1 cut(s) 470
BspLI GGNNCC 4 cut(s) 101, 572, 588, 612
BspPI GGATC 3 cut(s) 94, 107, 515
BspQI GCTCTTC 1 cut(s) 255
BsrBI CCGCTC 1 cut(s) 170
BsrI ACTGG 2 cut(s) 46, 505
BssECI CCNNGG 2 cut(s) 564, 594
BssMI GATC 2 cut(s) 99, 507
BssNI GRCGYC 2 cut(s) 187, 630
BssSI CACGAG 1 cut(s) 511
BssT1I CCWWGG 1 cut(s) 594
Bst2BI CACGAG 1 cut(s) 511
Bst2UI CCWGG 1 cut(s) 575
Bst6I CTCTTC 1 cut(s) 255
BstACI GRCGYC 2 cut(s) 187, 630
BstAPI GCANNNNNTGC 1 cut(s) 649
BstBAI YACGTR 1 cut(s) 532
BstDEI CTNAG 1 cut(s) 457
BstDSI CCRYGG 1 cut(s) 564
BstF5I GGATG 3 cut(s) 76, 174, 238
BstHHI GCGC 1 cut(s) 256
BstKTI GATC 2 cut(s) 102, 510
BstMAI GTCTC 2 cut(s) 178, 460
BstMBI GATC 2 cut(s) 99, 507
BstMWI GCNNNNNNNGC 3 cut(s) 262, 475, 649
BstNI CCWGG 1 cut(s) 575
BstSCI CCNGG 1 cut(s) 573
BstSFI CTRYAG 1 cut(s) 345
BstX2I RGATCY 1 cut(s) 99
BstYI RGATCY 1 cut(s) 99
BsuI GTATCC 1 cut(s) 277
BsuRI GGCC 2 cut(s) 563, 599
BtgI CCRYGG 1 cut(s) 564
BtrI CACGTC 1 cut(s) 580
BtsCI GGATG 3 cut(s) 76, 174, 238
BtsIMutI CAGTG 1 cut(s) 498
CfoI GCGC 1 cut(s) 256
CseI GACGC 2 cut(s) 195, 638
Csp6I GTAC 2 cut(s) 147, 217
CviAII CATG 5 cut(s) 193, 220, 385, 542, 550
CviQI GTAC 2 cut(s) 147, 217
DdeI CTNAG 1 cut(s) 457
DpnI GATC 2 cut(s) 101, 509
DpnII GATC 2 cut(s) 99, 507
DriI GACNNNNNGTC 2 cut(s) 340, 407
Eam1104I CTCTTC 1 cut(s) 255
Eam1105I GACNNNNNGTC 2 cut(s) 340, 407
EarI CTCTTC 1 cut(s) 255
Eco130I CCWWGG 1 cut(s) 594
Eco24I GRGCYC 1 cut(s) 573
Eco72I CACGTG 1 cut(s) 532
EcoRI GAATTC 1 cut(s) 491
EcoRII CCWGG 1 cut(s) 573
EcoT14I CCWWGG 1 cut(s) 594
EcoT38I GRGCYC 1 cut(s) 573
ErhI CCWWGG 1 cut(s) 594
Esp3I CGTCTC 2 cut(s) 178, 460
FaeI CATG 5 cut(s) 196, 223, 388, 545, 553
FaiI YATR 8 cut(s) 57, 194, 221, 247, 357, 386, 543, 551
FalI AAGNNNNNCTT 1 cut(s) 37
FaqI GGGAC 1 cut(s) 641
FatI CATG 5 cut(s) 192, 219, 384, 541, 549
FblI GTMKAC 1 cut(s) 333
Fnu4HI GCNGC 1 cut(s) 590
FokI GGATG 3 cut(s) 83, 161, 245
FriOI GRGCYC 1 cut(s) 573
Fsp4HI GCNGC 1 cut(s) 590
FspBI CTAG 3 cut(s) 237, 257, 623
GlaI GCGC 1 cut(s) 255
GluI GCNGC 1 cut(s) 590
GsuI CTGGAG 1 cut(s) 557
HaeIII GGCC 2 cut(s) 563, 599
HgaI GACGC 2 cut(s) 195, 638
HhaI GCGC 1 cut(s) 256
Hin1I GRCGYC 2 cut(s) 187, 630
Hin1II CATG 5 cut(s) 196, 223, 388, 545, 553
Hin6I GCGC 1 cut(s) 254
HinP1I GCGC 1 cut(s) 254
HincII GTYRAC 1 cut(s) 334
HindII GTYRAC 1 cut(s) 334
HindIII AAGCTT 1 cut(s) 14
HinfI GANTC 2 cut(s) 35, 327
Hpy166II GTNNAC 2 cut(s) 334, 401
Hpy188I TCNGA 2 cut(s) 49, 364
Hpy188III TCNNGA 4 cut(s) 32, 128, 178, 511
Hpy8I GTNNAC 2 cut(s) 334, 401
Hpy99I CGWCG 1 cut(s) 335
HpyAV CCTTC 2 cut(s) 457, 514
HpyCH4IV ACGT 3 cut(s) 276, 531, 579
HpyCH4V TGCA 2 cut(s) 643, 652
HpyF10VI GCNNNNNNNGC 3 cut(s) 262, 475, 649
HpyF3I CTNAG 1 cut(s) 457
HpySE526I ACGT 3 cut(s) 276, 531, 579
Hsp92I GRCGYC 2 cut(s) 187, 630
Hsp92II CATG 5 cut(s) 196, 223, 388, 545, 553
HspAI GCGC 1 cut(s) 254
Kzo9I GATC 2 cut(s) 99, 507
LguI GCTCTTC 1 cut(s) 255
LmnI GCTCC 4 cut(s) 210, 576, 586, 616
LpnPI CCDG 9 cut(s) 27, 120, 141, 191, 309, 420, 486, 560, 587
LweI GCATC 1 cut(s) 223
MaeI CTAG 3 cut(s) 237, 257, 623
MaeII ACGT 3 cut(s) 276, 531, 579
MaeIII GTNAC 2 cut(s) 64, 409
MalI GATC 2 cut(s) 101, 509
MbiI CCGCTC 1 cut(s) 170
MboI GATC 2 cut(s) 99, 507
MboII GAAGA 2 cut(s) 272, 611
MfeI CAATTG 1 cut(s) 209
MflI RGATCY 1 cut(s) 99
MhlI GDGCHC 1 cut(s) 573
MluCI AATT 8 cut(s) 111, 209, 242, 358, 426, 491, 615, 658
MlyI GAGTC 1 cut(s) 29
MmeI TCCRAC 1 cut(s) 583
MnlI CCTC 7 cut(s) 143, 299, 302, 386, 550, 553, 577
MseI TTAA 2 cut(s) 141, 661
MslI CAYNNNNRTG 3 cut(s) 179, 515, 638
MspR9I CCNGG 1 cut(s) 575
MunI CAATTG 1 cut(s) 209
MvaI CCWGG 1 cut(s) 575
MwoI GCNNNNNNNGC 3 cut(s) 262, 475, 649
NdeII GATC 2 cut(s) 99, 507
NlaIII CATG 5 cut(s) 196, 223, 388, 545, 553
NlaIV GGNNCC 4 cut(s) 101, 572, 588, 612
NmuCI GTSAC 2 cut(s) 64, 409
OliI CACNNNNGTG 1 cut(s) 638
PciSI GCTCTTC 1 cut(s) 255
PfeI GAWTC 1 cut(s) 327
Pfl23II CGTACG 1 cut(s) 146
PflMI CCANNNNNTGG 1 cut(s) 580
PfoI TCCNGGA 1 cut(s) 573
PkrI GCNGC 1 cut(s) 591
PleI GAGTC 1 cut(s) 29
PmaCI CACGTG 1 cut(s) 532
PmlI CACGTG 1 cut(s) 532
PpsI GAGTC 1 cut(s) 29
Ppu21I YACGTR 1 cut(s) 532
Psp6I CCWGG 1 cut(s) 573
PspCI CACGTG 1 cut(s) 532
PspGI CCWGG 1 cut(s) 573
PspLI CGTACG 1 cut(s) 146
PspN4I GGNNCC 4 cut(s) 101, 572, 588, 612
PsuI RGATCY 1 cut(s) 99
RsaI GTAC 2 cut(s) 148, 218
RsaNI GTAC 2 cut(s) 147, 217
RseI CAYNNNNRTG 3 cut(s) 179, 515, 638
SalI GTCGAC 1 cut(s) 332
SapI GCTCTTC 1 cut(s) 255
SaqAI TTAA 2 cut(s) 141, 661
SatI GCNGC 1 cut(s) 590
Sau3AI GATC 2 cut(s) 99, 507
SchI GAGTC 1 cut(s) 29
ScrFI CCNGG 1 cut(s) 575
SduI GDGCHC 1 cut(s) 573
SfaNI GCATC 1 cut(s) 223
SfcI CTRYAG 1 cut(s) 345
SmiMI CAYNNNNRTG 3 cut(s) 179, 515, 638
SmlI CTYRAG 1 cut(s) 301
SmoI CTYRAG 1 cut(s) 301
Sse9I AATT 8 cut(s) 111, 209, 242, 358, 426, 491, 615, 658
SsiI CCGC 2 cut(s) 168, 590
SspMI CTAG 3 cut(s) 237, 257, 623
StyD4I CCNGG 1 cut(s) 573
StyI CCWWGG 1 cut(s) 594
TaiI ACGT 3 cut(s) 279, 534, 582
TaqI TCGA 3 cut(s) 5, 333, 484
TasI AATT 8 cut(s) 111, 209, 242, 358, 426, 491, 615, 658
TatI WGTACW 1 cut(s) 216
TauI GCSGC 1 cut(s) 592
TfiI GAWTC 1 cut(s) 327
Tru1I TTAA 2 cut(s) 141, 661
Tru9I TTAA 2 cut(s) 141, 661
TscAI CASTG 1 cut(s) 505
TseFI GTSAC 2 cut(s) 64, 409
Tsp45I GTSAC 2 cut(s) 64, 409
TspDTI ATGAA 1 cut(s) 533
TspGWI ACGGA 2 cut(s) 83, 520
TspRI CASTG 1 cut(s) 505
Van91I CCANNNNNTGG 1 cut(s) 580
XapI RAATTY 1 cut(s) 491
XmiI GTMKAC 1 cut(s) 333
XspI CTAG 3 cut(s) 237, 257, 623
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.