Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004248.1

Orthogroup ID

OG0016468

Physical Location & Seq

Genomic Coordinates Forward (+)

76772 .. 77965

Gene Structure 1194 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004248.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ctgccgagcctactgcctagcgctgccctcctgccagaagccctgcagtccttagctgcacatactgccgctccttgctgcagcctcaccataacaccaagttcctactgctgcccgccatatgccgcaagcctcaccaccctgcccagctcgtctactgcccccgcagtctctgcacaccaactgcggcatcttcctgttgctaccgcaagaccgtgcaaccctgccttcctacgctgctgcttcctacgtctgtgcacacctccctacacacctgcttgcacacctgccgcactgagcctgctgctgccccgtgcacttgttgctgttgcttgcgttcgtgcacaccatctgctgctgctgctgccccaaaacacgcctgctccaacacacgcgtgttctcaagccccaaaccatcacgcacctaacccggatcttgtgttcgtacgaacacctacaaagcatggtcaaacagtcatcttgatgctacgtcatatggacaaagcactcaaattggagtatatgtcgatcaaggatgcaagagagctatgggtagcgctagaagagcgctttggcaatgtccaagatttcctcctccctggcttgaaggttcaatggaacaatctgcgctttgctgacttcaagtttgtagctaaatataatttagaagctcttcgcttacaatccatgttgagattttgtggacaacctgtcacagagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Retrotran_gag_2 zf-CCHC

Protein Analysis

240

Amino Acids

26.24

Weight (kDa)

8.99

Isoelectric Point (pI)

60.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016468)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8375535.1_g000001 Rmu_sc0000332.1_g000051 Rmu_sc0000762.1_g000041 Rmu_sc0001600.1_g000002 Rmu_sc0002071.1_g000021 Rmu_sc0002161.1_g000008 Rmu_sc0002350.1_g000011 Rmu_sc0002983.1_g000022 Rmu_sc0003160.1_g000007 Rmu_sc0004248.1_g000014 Rmu_sc0004304.1_g000021 Rmu_sc0005069.1_g000021 Rmu_sc0013350.1_g000006 Rmu_sc0017231.1_g000006
rosa_samantha	Rh3BG272100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	283, 295
Acc36I	ACCTGC	2 cut(s)	283, 295
AccBSI	CCGCTC	1 cut(s)	71
AccI	GTMKAC	1 cut(s)	155
AccII	CGCG	1 cut(s)	395
AciI	CCGC	7 cut(s)	69, 116, 126, 165, 187, 207, 291
AclWI	GGATC	1 cut(s)	441
AfaI	GTAC	1 cut(s)	447
AfeI	AGCGCT	3 cut(s)	22, 558, 569
AflIII	ACRYGT	1 cut(s)	393
AgsI	TTSAA	3 cut(s)	607, 614, 643
AhdI	GACNNNNNGTC	1 cut(s)	710
AjnI	CCWGG	1 cut(s)	598
AjuI	GAANNNNNNNTTGG	2 cut(s)	555, 587
AleI	CACNNNNGTG	1 cut(s)	394
AloI	GAACNNNNNNTCC	2 cut(s)	425, 457
AluBI	AGCT	5 cut(s)	56, 150, 547, 653, 671
AluI	AGCT	5 cut(s)	56, 150, 547, 653, 671
Alw21I	GWGCWC	3 cut(s)	260, 319, 346
Alw26I	GTCTC	1 cut(s)	175
Alw44I	GTGCAC	3 cut(s)	256, 315, 342
AlwI	GGATC	1 cut(s)	441
AlwNI	CAGNNNCTG	1 cut(s)	173
Aor51HI	AGCGCT	3 cut(s)	22, 558, 569
ApaLI	GTGCAC	3 cut(s)	256, 315, 342
ArsI	GACNNNNNNTTYG	2 cut(s)	629, 661
Asp700I	GAANNNNTTC	1 cut(s)	672
AspLEI	GCGC	4 cut(s)	23, 559, 570, 630
AsuC2I	CCSGG	1 cut(s)	431
AsuHPI	GGTGA	2 cut(s)	79, 127
BaeGI	GKGCMC	3 cut(s)	260, 319, 346
Bbv12I	GWGCWC	3 cut(s)	260, 319, 346
BccI	CCATC	2 cut(s)	357, 423
BcgI	CGANNNNNNTGC	1 cut(s)	29
BciT130I	CCWGG	1 cut(s)	600
BcnI	CCSGG	1 cut(s)	431
BcoDI	GTCTC	1 cut(s)	175
BfaI	CTAG	2 cut(s)	18, 560
BfmI	CTRYAG	2 cut(s)	44, 79
BfoI	RGCGCY	3 cut(s)	24, 560, 571
BfuAI	ACCTGC	2 cut(s)	283, 295
Bme1390I	CCNGG	2 cut(s)	431, 600
BmeRI	GACNNNNNGTC	1 cut(s)	710
BmrFI	CCNGG	2 cut(s)	431, 600
BmsI	GCATC	3 cut(s)	199, 474, 526
Bpu10I	CCTNAGC	1 cut(s)	52
BpuEI	CTTGAG	1 cut(s)	387
BpuMI	CCSGG	1 cut(s)	431
BsaJI	CCNNGG	1 cut(s)	598
BsaXI	ACNNNNNCTCC	6 cut(s)	55, 85, 367, 397, 509, 539
Bse3DI	GCAATG	1 cut(s)	583
BseBI	CCWGG	1 cut(s)	600
BseDI	CCNNGG	1 cut(s)	598
BseGI	GGATG	1 cut(s)	541
BseMI	GCAATG	1 cut(s)	583
BseMII	CTCAG	1 cut(s)	287
BseRI	GAGGAG	1 cut(s)	584
BseSI	GKGCMC	3 cut(s)	260, 319, 346
BseYI	CCCAGC	1 cut(s)	146
BsgI	GTGCAG	2 cut(s)	42, 159
Bsh1236I	CGCG	1 cut(s)	395
BsiHKAI	GWGCWC	3 cut(s)	260, 319, 346
BsiSI	CCGG	1 cut(s)	431
BsiWI	CGTACG	1 cut(s)	445
BsmAI	GTCTC	1 cut(s)	175
Bsp1286I	GDGCHC	3 cut(s)	260, 319, 346
Bsp143I	GATC	2 cut(s)	433, 528
BspACI	CCGC	7 cut(s)	69, 116, 126, 165, 187, 207, 291
BspCNI	CTCAG	1 cut(s)	288
BspFNI	CGCG	1 cut(s)	395
BspMAI	CTGCAG	2 cut(s)	48, 83
BspMI	ACCTGC	2 cut(s)	283, 295
BspPI	GGATC	1 cut(s)	441
BspQI	GCTCTTC	2 cut(s)	558, 678
BsrBI	CCGCTC	1 cut(s)	71
BsrDI	GCAATG	1 cut(s)	583
BssECI	CCNNGG	1 cut(s)	598
BssMI	GATC	2 cut(s)	433, 528
Bst2UI	CCWGG	1 cut(s)	600
Bst4CI	ACNGT	2 cut(s)	216, 475
Bst6I	CTCTTC	2 cut(s)	558, 678
BstAPI	GCANNNNNTGC	3 cut(s)	65, 173, 323
BstC8I	GCNNGC	6 cut(s)	116, 130, 280, 302, 334, 381
BstDEI	CTNAG	2 cut(s)	52, 296
BstF5I	GGATG	1 cut(s)	541
BstFNI	CGCG	1 cut(s)	395
BstH2I	RGCGCY	3 cut(s)	24, 560, 571
BstHHI	GCGC	4 cut(s)	23, 559, 570, 630
BstKTI	GATC	2 cut(s)	436, 531
BstMAI	GTCTC	1 cut(s)	175
BstMBI	GATC	2 cut(s)	433, 528
BstMWI	GCNNNNNNNGC	6 cut(s)	65, 173, 323, 361, 364, 565
BstNI	CCWGG	1 cut(s)	600
BstSCI	CCNGG	2 cut(s)	429, 598
BstSFI	CTRYAG	2 cut(s)	44, 79
BstSLI	GKGCMC	3 cut(s)	260, 319, 346
BstUI	CGCG	1 cut(s)	395
BstX2I	RGATCY	1 cut(s)	433
BstYI	RGATCY	1 cut(s)	433
BtsCI	GGATG	1 cut(s)	541
BtsIMutI	CAGTG	1 cut(s)	293
BveI	ACCTGC	2 cut(s)	283, 295
Cac8I	GCNNGC	6 cut(s)	116, 130, 280, 302, 334, 381
CaiI	CAGNNNCTG	1 cut(s)	173
CfoI	GCGC	4 cut(s)	23, 559, 570, 630
Csp6I	GTAC	1 cut(s)	446
CviAII	CATG	2 cut(s)	464, 688
CviQI	GTAC	1 cut(s)	446
DdeI	CTNAG	2 cut(s)	52, 296
DpnI	GATC	2 cut(s)	435, 530
DpnII	GATC	2 cut(s)	433, 528
DriI	GACNNNNNGTC	1 cut(s)	710
Eam1104I	CTCTTC	2 cut(s)	558, 678
Eam1105I	GACNNNNNGTC	1 cut(s)	710
EarI	CTCTTC	2 cut(s)	558, 678
Eco47III	AGCGCT	3 cut(s)	22, 558, 569
EcoRII	CCWGG	1 cut(s)	598
FaeI	CATG	2 cut(s)	467, 691
FatI	CATG	2 cut(s)	463, 687
FauI	CCCGC	2 cut(s)	123, 172
FauNDI	CATATG	2 cut(s)	121, 495
FblI	GTMKAC	1 cut(s)	155
FokI	GGATG	1 cut(s)	548
FspBI	CTAG	2 cut(s)	18, 560
GlaI	GCGC	4 cut(s)	22, 558, 569, 629
GsaI	CCCAGC	1 cut(s)	150
HaeII	RGCGCY	3 cut(s)	24, 560, 571
HapII	CCGG	1 cut(s)	431
HhaI	GCGC	4 cut(s)	23, 559, 570, 630
Hin1II	CATG	2 cut(s)	467, 691
Hin6I	GCGC	4 cut(s)	21, 557, 568, 628
HinP1I	GCGC	4 cut(s)	21, 557, 568, 628
HpaII	CCGG	1 cut(s)	431
HphI	GGTGA	2 cut(s)	79, 127
Hpy166II	GTNNAC	5 cut(s)	156, 258, 317, 344, 704
Hpy188III	TCNNGA	1 cut(s)	481
Hpy8I	GTNNAC	5 cut(s)	156, 258, 317, 344, 704
HpyAV	CCTTC	2 cut(s)	238, 601
HpyCH4III	ACNGT	2 cut(s)	216, 475
HpyCH4IV	ACGT	2 cut(s)	250, 490
HpyF10VI	GCNNNNNNNGC	6 cut(s)	65, 173, 323, 361, 364, 565
HpyF3I	CTNAG	2 cut(s)	52, 296
HpySE526I	ACGT	2 cut(s)	250, 490
Hsp92II	CATG	2 cut(s)	467, 691
HspAI	GCGC	4 cut(s)	21, 557, 568, 628
Kzo9I	GATC	2 cut(s)	433, 528
LguI	GCTCTTC	2 cut(s)	558, 678
LmnI	GCTCC	2 cut(s)	76, 388
LweI	GCATC	3 cut(s)	199, 474, 526
MaeI	CTAG	2 cut(s)	18, 560
MaeII	ACGT	2 cut(s)	250, 490
MaeIII	GTNAC	1 cut(s)	712
MalI	GATC	2 cut(s)	435, 530
MbiI	CCGCTC	1 cut(s)	71
MboI	GATC	2 cut(s)	433, 528
MboII	GAAGA	3 cut(s)	185, 575, 665
MflI	RGATCY	1 cut(s)	433
MhlI	GDGCHC	3 cut(s)	260, 319, 346
MluCI	AATT	2 cut(s)	512, 661
MluI	ACGCGT	1 cut(s)	393
MmeI	TCCRAC	1 cut(s)	410
MnlI	CCTC	6 cut(s)	38, 95, 143, 273, 602, 605
MroXI	GAANNNNTTC	1 cut(s)	672
MslI	CAYNNNNRTG	2 cut(s)	394, 482
MspI	CCGG	1 cut(s)	431
MspR9I	CCNGG	2 cut(s)	431, 600
MvaI	CCWGG	1 cut(s)	600
MvnI	CGCG	1 cut(s)	395
MwoI	GCNNNNNNNGC	6 cut(s)	65, 173, 323, 361, 364, 565
NciI	CCSGG	1 cut(s)	431
NdeI	CATATG	2 cut(s)	121, 495
NdeII	GATC	2 cut(s)	433, 528
NlaIII	CATG	2 cut(s)	467, 691
NmeAIII	GCCGAG	1 cut(s)	30
NmuCI	GTSAC	1 cut(s)	712
OliI	CACNNNNGTG	1 cut(s)	394
PaqCI	CACCTGC	2 cut(s)	283, 295
PciSI	GCTCTTC	2 cut(s)	558, 678
PdmI	GAANNNNTTC	1 cut(s)	672
Pfl23II	CGTACG	1 cut(s)	445
Psp6I	CCWGG	1 cut(s)	598
PspFI	CCCAGC	1 cut(s)	146
PspGI	CCWGG	1 cut(s)	598
PspLI	CGTACG	1 cut(s)	445
PstI	CTGCAG	2 cut(s)	48, 83
PstNI	CAGNNNCTG	1 cut(s)	173
PsuI	RGATCY	1 cut(s)	433
RsaI	GTAC	1 cut(s)	447
RsaNI	GTAC	1 cut(s)	446
RseI	CAYNNNNRTG	2 cut(s)	394, 482
SapI	GCTCTTC	2 cut(s)	558, 678
Sau3AI	GATC	2 cut(s)	433, 528
ScrFI	CCNGG	2 cut(s)	431, 600
SduI	GDGCHC	3 cut(s)	260, 319, 346
SfaNI	GCATC	3 cut(s)	199, 474, 526
SfcI	CTRYAG	2 cut(s)	44, 79
SmiMI	CAYNNNNRTG	2 cut(s)	394, 482
SmlI	CTYRAG	1 cut(s)	402
SmoI	CTYRAG	1 cut(s)	402
Sse9I	AATT	2 cut(s)	512, 661
SsiI	CCGC	7 cut(s)	69, 116, 126, 165, 187, 207, 291
SspMI	CTAG	2 cut(s)	18, 560
StyD4I	CCNGG	2 cut(s)	429, 598
TaaI	ACNGT	2 cut(s)	216, 475
TaiI	ACGT	2 cut(s)	253, 493
TaqI	TCGA	1 cut(s)	527
TasI	AATT	2 cut(s)	512, 661
TauI	GCSGC	4 cut(s)	71, 128, 190, 293
TscAI	CASTG	1 cut(s)	300
TseFI	GTSAC	1 cut(s)	712
Tsp45I	GTSAC	1 cut(s)	712
TspRI	CASTG	1 cut(s)	300
VneI	GTGCAC	3 cut(s)	256, 315, 342
XmiI	GTMKAC	1 cut(s)	155
XmnI	GAANNNNTTC	1 cut(s)	672
XspI	CTAG	2 cut(s)	18, 560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.