Rmu_sc0005069.1_g000021

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005069.1
OG0016468
Physical Location & Seq
Forward (+)
83366 .. 83884
519 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005069.1_g000021.1.cds

Sequence Viewer

Length: 519 bp
atgtcaaggcttgactttcctatccttgactcaactggctcggaatatcatagttgggtcacggatgttgagaaccatgtcacttcaaaagggatcctactcgtaattcaggcaccaaatccagatcttctattcgagcgtacggctacgaataatgccaccgcccttatcttgataaggcgccatatggataaatcactccgattggagtacatggcaatcaaagatgctagagaatcatgggttgcgctagaagagcgttttggtaatgtaaaggataccctcctccctgacttgaaagttcaatggagtaatctacgatttgctgacttcaagtctatagctaaatataattcagaagttctacgcctcaaaactatgttggggttctgtggacagcctgtcacagagcaagagctaattgagaaaactctctccaccttccccgtctcagcaattttgctatcaaagcaatatcgaaccgaatacaatactggacggctcacgaggtttcattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

172

Amino Acids

19.84

Weight (kDa)

7.86

Isoelectric Point (pI)

38.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 112, 180
AciI CCGC 1 cut(s) 162
AclWI GGATC 2 cut(s) 88, 101
AcyI GRCGYC 1 cut(s) 181
AfaI GTAC 2 cut(s) 142, 212
AgsI TTSAA 4 cut(s) 87, 298, 305, 334
AhdI GACNNNNNGTC 2 cut(s) 334, 401
AjuI GAANNNNNNNTTGG 2 cut(s) 246, 278
AluBI AGCT 2 cut(s) 344, 418
AluI AGCT 2 cut(s) 344, 418
Alw26I GTCTC 1 cut(s) 454
AlwI GGATC 2 cut(s) 88, 101
AspLEI GCGC 2 cut(s) 183, 250
BamHI GGATCC 1 cut(s) 93
BanI GGYRCC 2 cut(s) 112, 180
BauI CACGAG 1 cut(s) 505
BceAI ACGGC 2 cut(s) 159, 515
BciVI GTATCC 1 cut(s) 271
BcoDI GTCTC 1 cut(s) 454
BfaI CTAG 2 cut(s) 231, 251
BfmI CTRYAG 1 cut(s) 339
BfoI RGCGCY 1 cut(s) 184
BfuI GTATCC 1 cut(s) 271
BglII AGATCT 1 cut(s) 124
BmeRI GACNNNNNGTC 2 cut(s) 334, 401
BmiI GGNNCC 3 cut(s) 95, 114, 182
BmsI GCATC 1 cut(s) 217
BsaHI GRCGYC 1 cut(s) 181
Bse1I ACTGG 2 cut(s) 40, 499
BseGI GGATG 1 cut(s) 70
BseMII CTCAG 1 cut(s) 465
BseNI ACTGG 2 cut(s) 40, 499
BseRI GAGGAG 1 cut(s) 275
BshNI GGYRCC 2 cut(s) 112, 180
BsiWI CGTACG 1 cut(s) 140
BsmAI GTCTC 1 cut(s) 454
BsmBI CGTCTC 1 cut(s) 454
Bsp143I GATC 2 cut(s) 93, 124
BspACI CCGC 1 cut(s) 162
BspCNI CTCAG 1 cut(s) 464
BspLI GGNNCC 3 cut(s) 95, 114, 182
BspPI GGATC 2 cut(s) 88, 101
BspQI GCTCTTC 1 cut(s) 249
BspT107I GGYRCC 2 cut(s) 112, 180
BsrI ACTGG 2 cut(s) 40, 499
BssMI GATC 2 cut(s) 93, 124
BssNI GRCGYC 1 cut(s) 181
BssSI CACGAG 1 cut(s) 505
Bst2BI CACGAG 1 cut(s) 505
Bst6I CTCTTC 1 cut(s) 249
BstACI GRCGYC 1 cut(s) 181
BstDEI CTNAG 1 cut(s) 451
BstF5I GGATG 1 cut(s) 70
BstH2I RGCGCY 1 cut(s) 184
BstHHI GCGC 2 cut(s) 183, 250
BstKTI GATC 2 cut(s) 96, 127
BstMAI GTCTC 1 cut(s) 454
BstMBI GATC 2 cut(s) 93, 124
BstMWI GCNNNNNNNGC 2 cut(s) 256, 469
BstSFI CTRYAG 1 cut(s) 339
BstX2I RGATCY 2 cut(s) 93, 124
BstYI RGATCY 2 cut(s) 93, 124
BsuI GTATCC 1 cut(s) 271
BtsCI GGATG 1 cut(s) 70
CfoI GCGC 2 cut(s) 183, 250
Csp6I GTAC 2 cut(s) 141, 211
CviAII CATG 3 cut(s) 77, 214, 240
CviJI RGCY 7 cut(s) 10, 39, 146, 344, 400, 418, 502
CviKI_1 RGCY 7 cut(s) 10, 39, 146, 344, 400, 418, 502
CviQI GTAC 2 cut(s) 141, 211
DdeI CTNAG 1 cut(s) 451
DinI GGCGCC 1 cut(s) 182
DpnI GATC 2 cut(s) 95, 126
DpnII GATC 2 cut(s) 93, 124
DriI GACNNNNNGTC 2 cut(s) 334, 401
Eam1104I CTCTTC 1 cut(s) 249
Eam1105I GACNNNNNGTC 2 cut(s) 334, 401
EarI CTCTTC 1 cut(s) 249
EgeI GGCGCC 1 cut(s) 182
EheI GGCGCC 1 cut(s) 182
Esp3I CGTCTC 1 cut(s) 454
FaeI CATG 3 cut(s) 80, 217, 243
FaiI YATR 9 cut(s) 51, 78, 186, 188, 215, 241, 341, 351, 380
FatI CATG 3 cut(s) 76, 213, 239
FauNDI CATATG 1 cut(s) 186
FokI GGATG 1 cut(s) 77
FspBI CTAG 2 cut(s) 231, 251
GlaI GCGC 2 cut(s) 182, 249
HaeII RGCGCY 1 cut(s) 184
HhaI GCGC 2 cut(s) 183, 250
Hin1I GRCGYC 1 cut(s) 181
Hin1II CATG 3 cut(s) 80, 217, 243
Hin6I GCGC 2 cut(s) 181, 248
HinP1I GCGC 2 cut(s) 181, 248
HinfI GANTC 2 cut(s) 29, 236
Hpy166II GTNNAC 1 cut(s) 395
Hpy188I TCNGA 3 cut(s) 43, 203, 358
Hpy188III TCNNGA 3 cut(s) 122, 172, 505
Hpy8I GTNNAC 1 cut(s) 395
HpyAV CCTTC 1 cut(s) 451
HpyF10VI GCNNNNNNNGC 2 cut(s) 256, 469
HpyF3I CTNAG 1 cut(s) 451
Hsp92I GRCGYC 1 cut(s) 181
Hsp92II CATG 3 cut(s) 80, 217, 243
HspAI GCGC 2 cut(s) 181, 248
KasI GGCGCC 1 cut(s) 180
Kzo9I GATC 2 cut(s) 93, 124
LguI GCTCTTC 1 cut(s) 249
LpnPI CCDG 6 cut(s) 21, 95, 135, 303, 414, 480
LweI GCATC 1 cut(s) 217
MaeI CTAG 2 cut(s) 231, 251
MaeIII GTNAC 3 cut(s) 58, 79, 403
MalI GATC 2 cut(s) 95, 126
MboI GATC 2 cut(s) 93, 124
MboII GAAGA 2 cut(s) 119, 266
MflI RGATCY 2 cut(s) 93, 124
MluCI AATT 4 cut(s) 105, 352, 420, 456
Mly113I GGCGCC 1 cut(s) 181
MlyI GAGTC 1 cut(s) 23
MnlI CCTC 4 cut(s) 293, 296, 380, 501
MwoI GCNNNNNNNGC 2 cut(s) 256, 469
NarI GGCGCC 1 cut(s) 181
NdeI CATATG 1 cut(s) 186
NdeII GATC 2 cut(s) 93, 124
NlaIII CATG 3 cut(s) 80, 217, 243
NlaIV GGNNCC 3 cut(s) 95, 114, 182
NmuCI GTSAC 3 cut(s) 58, 79, 403
PciSI GCTCTTC 1 cut(s) 249
PfeI GAWTC 1 cut(s) 236
Pfl23II CGTACG 1 cut(s) 140
PleI GAGTC 1 cut(s) 23
PluTI GGCGCC 1 cut(s) 184
PpsI GAGTC 1 cut(s) 23
PspLI CGTACG 1 cut(s) 140
PspN4I GGNNCC 3 cut(s) 95, 114, 182
PsuI RGATCY 2 cut(s) 93, 124
RsaI GTAC 2 cut(s) 142, 212
RsaNI GTAC 2 cut(s) 141, 211
SapI GCTCTTC 1 cut(s) 249
Sau3AI GATC 2 cut(s) 93, 124
SchI GAGTC 1 cut(s) 23
SetI ASST 4 cut(s) 346, 420, 443, 512
SfaNI GCATC 1 cut(s) 217
SfcI CTRYAG 1 cut(s) 339
SfoI GGCGCC 1 cut(s) 182
Sse9I AATT 4 cut(s) 105, 352, 420, 456
SsiI CCGC 1 cut(s) 162
SspDI GGCGCC 1 cut(s) 180
SspMI CTAG 2 cut(s) 231, 251
TaqI TCGA 2 cut(s) 135, 478
TasI AATT 4 cut(s) 105, 352, 420, 456
TatI WGTACW 1 cut(s) 210
TfiI GAWTC 1 cut(s) 236
TseFI GTSAC 3 cut(s) 58, 79, 403
Tsp45I GTSAC 3 cut(s) 58, 79, 403
TspDTI ATGAA 1 cut(s) 503
TspGWI ACGGA 1 cut(s) 77
XspI CTAG 2 cut(s) 231, 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.