Rmu_sc0000007.1_g000017

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000007.1
OG0010583
Physical Location & Seq
Forward (+)
97233 .. 98426
1194 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 750 bp
atgacgatctcatatagcgtagctcatccattaatcactacaggcttgtgcttcatcatcatcatcatcatcaagaaaattcaaccctcgcccctactgcccgacgtcaaacaagtaatggataatactcgagcaacaacatcaggaaccaaagtagaacggagggttattgagaagaacaggagaaaccacatgaaaatcctctactcccacctcaactctctcctcccaaaccaaaattccaaggaacctctgagtctgcctgaacaaatagatgaggcaattaactacatcaaaaccctggagtcgaatctgcagaaatccaagcagaaaagggacaacctaaagtttggtaggaaaagatcatatgaattatgcagcagcacctttgagaccagatcagctgcccccacaaaatcgccgcaaattcaaatccatgagaatggttccaccctagaggttgttttgagtactggcctacacaatcagttcatcttctacgatatcattcgcatacttgaccaagaacaagcagatgtagtacatgctagcttttcaacttccggagactctatacttcacctagtccgtgcagagctgggcaagtcgatgcttgattttggggcagcaagaataactgagaagctgaaaagaattgtcaatggatccgcaagcgatgaagaactacagcatgatgatcaagactacttttgggacttccaaatccatcctcagatgtgggatttctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

249

Amino Acids

28.5

Weight (kDa)

7.13

Isoelectric Point (pI)

44.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 53 - 102 1.8e-08 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 108
AccIII TCCGGA 1 cut(s) 563
AciI CCGC 2 cut(s) 422, 669
AclWI GGATC 2 cut(s) 660, 673
AcsI RAATTY 3 cut(s) 78, 238, 426
AcyI GRCGYC 1 cut(s) 105
AfaI GTAC 2 cut(s) 472, 543
AgsI TTSAA 3 cut(s) 83, 431, 558
AjnI CCWGG 1 cut(s) 300
AjuI GAANNNNNNNTTGG 2 cut(s) 223, 255
AluBI AGCT 5 cut(s) 23, 404, 552, 598, 646
AluI AGCT 5 cut(s) 23, 404, 552, 598, 646
Alw26I GTCTC 2 cut(s) 386, 561
AlwI GGATC 2 cut(s) 660, 673
Ama87I CYCGRG 1 cut(s) 129
Aor13HI TCCGGA 1 cut(s) 563
AoxI GGCC 1 cut(s) 475
ApeKI GCWGC 4 cut(s) 378, 381, 404, 626
ApoI RAATTY 3 cut(s) 78, 238, 426
AseI ATTAAT 1 cut(s) 32
AsuHPI GGTGA 1 cut(s) 572
AsuNHI GCTAGC 1 cut(s) 548
AvaI CYCGRG 1 cut(s) 129
BamHI GGATCC 1 cut(s) 665
BbvI GCAGC 4 cut(s) 390, 391, 393, 638
BccI CCATC 1 cut(s) 735
BciT130I CCWGG 1 cut(s) 302
BclI TGATCA 1 cut(s) 697
BcoDI GTCTC 2 cut(s) 386, 561
BfaI CTAG 3 cut(s) 455, 549, 584
BfmI CTRYAG 3 cut(s) 39, 314, 686
BisI GCNGC 5 cut(s) 379, 382, 405, 422, 627
BlsI GCNGC 5 cut(s) 380, 383, 406, 423, 628
BmcAI AGTACT 1 cut(s) 472
Bme1390I CCNGG 1 cut(s) 302
BmeT110I CYCGRG 1 cut(s) 129
BmiI GGNNCC 4 cut(s) 148, 249, 448, 667
BmrFI CCNGG 1 cut(s) 302
BmsI GCATC 1 cut(s) 600
BmtI GCTAGC 1 cut(s) 552
BpmI CTGGAG 1 cut(s) 323
BsaHI GRCGYC 1 cut(s) 105
BsaI GGTCTC 1 cut(s) 386
BsaJI CCNNGG 2 cut(s) 243, 300
BsaWI WCCGGW 1 cut(s) 563
Bse1I ACTGG 1 cut(s) 478
BseAI TCCGGA 1 cut(s) 563
BseBI CCWGG 1 cut(s) 302
BseDI CCNNGG 2 cut(s) 243, 300
BseGI GGATG 2 cut(s) 25, 727
BseMII CTCAG 3 cut(s) 245, 630, 746
BseNI ACTGG 1 cut(s) 478
BseRI GAGGAG 1 cut(s) 215
BseXI GCAGC 4 cut(s) 390, 391, 393, 638
BseYI CCCAGC 1 cut(s) 598
BsgI GTGCAG 1 cut(s) 612
BshFI GGCC 1 cut(s) 477
BsiHKCI CYCGRG 1 cut(s) 129
BsiSI CCGG 1 cut(s) 564
BslFI GGGAC 2 cut(s) 350, 728
BsmAI GTCTC 2 cut(s) 386, 561
BsmFI GGGAC 2 cut(s) 350, 728
BsnI GGCC 1 cut(s) 477
Bso31I GGTCTC 1 cut(s) 386
BsoBI CYCGRG 1 cut(s) 129
Bsp13I TCCGGA 1 cut(s) 563
Bsp143I GATC 5 cut(s) 6, 362, 398, 665, 697
BspACI CCGC 2 cut(s) 422, 669
BspANI GGCC 1 cut(s) 477
BspCNI CTCAG 3 cut(s) 246, 631, 745
BspEI TCCGGA 1 cut(s) 563
BspLI GGNNCC 4 cut(s) 148, 249, 448, 667
BspMAI CTGCAG 1 cut(s) 318
BspOI GCTAGC 1 cut(s) 552
BspPI GGATC 2 cut(s) 660, 673
BspTNI GGTCTC 1 cut(s) 386
BsrI ACTGG 1 cut(s) 478
BssECI CCNNGG 2 cut(s) 243, 300
BssMI GATC 5 cut(s) 6, 362, 398, 665, 697
BssNI GRCGYC 1 cut(s) 105
BssT1I CCWWGG 1 cut(s) 243
Bst2UI CCWGG 1 cut(s) 302
BstACI GRCGYC 1 cut(s) 105
BstC8I GCNNGC 2 cut(s) 550, 673
BstDEI CTNAG 3 cut(s) 254, 639, 732
BstF5I GGATG 2 cut(s) 25, 727
BstKTI GATC 5 cut(s) 9, 365, 401, 668, 700
BstMAI GTCTC 2 cut(s) 386, 561
BstMBI GATC 5 cut(s) 6, 362, 398, 665, 697
BstMWI GCNNNNNNNGC 1 cut(s) 97
BstNI CCWGG 1 cut(s) 302
BstNSI RCATGY 1 cut(s) 548
BstSCI CCNGG 1 cut(s) 300
BstSFI CTRYAG 3 cut(s) 39, 314, 686
BstV1I GCAGC 4 cut(s) 390, 391, 393, 638
BstX2I RGATCY 1 cut(s) 665
BstXI CCANNNNNNTGG 1 cut(s) 443
BstYI RGATCY 1 cut(s) 665
BsuRI GGCC 1 cut(s) 477
BtgZI GCGATG 1 cut(s) 690
BtsCI GGATG 2 cut(s) 25, 727
Cac8I GCNNGC 2 cut(s) 550, 673
Csp6I GTAC 2 cut(s) 471, 542
CviAII CATG 4 cut(s) 193, 437, 545, 692
CviJI RGCY 7 cut(s) 23, 45, 404, 477, 552, 598, 646
CviKI_1 RGCY 7 cut(s) 23, 45, 404, 477, 552, 598, 646
CviQI GTAC 2 cut(s) 471, 542
DdeI CTNAG 3 cut(s) 254, 639, 732
DpnI GATC 5 cut(s) 8, 364, 400, 667, 699
DpnII GATC 5 cut(s) 6, 362, 398, 665, 697
Eco130I CCWWGG 1 cut(s) 243
Eco31I GGTCTC 1 cut(s) 386
Eco32I GATATC 1 cut(s) 505
Eco88I CYCGRG 1 cut(s) 129
EcoRII CCWGG 1 cut(s) 300
EcoRV GATATC 1 cut(s) 505
EcoT14I CCWWGG 1 cut(s) 243
ErhI CCWWGG 1 cut(s) 243
FaeI CATG 4 cut(s) 196, 440, 548, 695
FaqI GGGAC 2 cut(s) 350, 728
FatI CATG 4 cut(s) 192, 436, 544, 691
FauNDI CATATG 1 cut(s) 367
FbaI TGATCA 1 cut(s) 697
Fnu4HI GCNGC 5 cut(s) 379, 382, 405, 422, 627
FokI GGATG 2 cut(s) 12, 714
Fsp4HI GCNGC 5 cut(s) 379, 382, 405, 422, 627
FspBI CTAG 3 cut(s) 455, 549, 584
GluI GCNGC 5 cut(s) 379, 382, 405, 422, 627
GsaI CCCAGC 1 cut(s) 602
GsuI CTGGAG 1 cut(s) 323
HaeIII GGCC 1 cut(s) 477
HapII CCGG 1 cut(s) 564
Hin1I GRCGYC 1 cut(s) 105
Hin1II CATG 4 cut(s) 196, 440, 548, 695
HinfI GANTC 4 cut(s) 256, 305, 310, 569
HpaII CCGG 1 cut(s) 564
HphI GGTGA 1 cut(s) 572
Hpy188I TCNGA 3 cut(s) 255, 735, 749
Hpy188III TCNNGA 4 cut(s) 73, 144, 564, 701
Hpy99I CGWCG 1 cut(s) 107
HpyCH4IV ACGT 1 cut(s) 105
HpyCH4V TGCA 3 cut(s) 316, 378, 593
HpyF10VI GCNNNNNNNGC 1 cut(s) 97
HpyF3I CTNAG 3 cut(s) 254, 639, 732
HpySE526I ACGT 1 cut(s) 105
Hsp92I GRCGYC 1 cut(s) 105
Hsp92II CATG 4 cut(s) 196, 440, 548, 695
Kpn2I TCCGGA 1 cut(s) 563
Ksp22I TGATCA 1 cut(s) 697
Kzo9I GATC 5 cut(s) 6, 362, 398, 665, 697
Lsp1109I GCAGC 4 cut(s) 390, 391, 393, 638
LweI GCATC 1 cut(s) 600
MaeI CTAG 3 cut(s) 455, 549, 584
MaeII ACGT 1 cut(s) 105
MalI GATC 5 cut(s) 8, 364, 400, 667, 699
MboI GATC 5 cut(s) 6, 362, 398, 665, 697
MboII GAAGA 3 cut(s) 187, 487, 692
MflI RGATCY 1 cut(s) 665
MluCI AATT 6 cut(s) 78, 238, 282, 371, 426, 654
MlyI GAGTC 3 cut(s) 265, 314, 563
MnlI CCTC 9 cut(s) 97, 156, 212, 224, 236, 261, 271, 451, 741
MroI TCCGGA 1 cut(s) 563
MseI TTAA 2 cut(s) 32, 285
MslI CAYNNNNRTG 1 cut(s) 441
MspA1I CMGCKG 1 cut(s) 404
MspI CCGG 1 cut(s) 564
MspR9I CCNGG 1 cut(s) 302
MvaI CCWGG 1 cut(s) 302
MwoI GCNNNNNNNGC 1 cut(s) 97
NdeI CATATG 1 cut(s) 367
NdeII GATC 5 cut(s) 6, 362, 398, 665, 697
NheI GCTAGC 1 cut(s) 548
NlaIII CATG 4 cut(s) 196, 440, 548, 695
NlaIV GGNNCC 4 cut(s) 148, 249, 448, 667
NspI RCATGY 1 cut(s) 548
PaeR7I CTCGAG 1 cut(s) 129
PfeI GAWTC 1 cut(s) 310
PkrI GCNGC 5 cut(s) 380, 383, 406, 423, 628
PleI GAGTC 3 cut(s) 264, 313, 563
PpsI GAGTC 3 cut(s) 264, 313, 563
PshBI ATTAAT 1 cut(s) 32
Psp6I CCWGG 1 cut(s) 300
PspFI CCCAGC 1 cut(s) 598
PspGI CCWGG 1 cut(s) 300
PspN4I GGNNCC 4 cut(s) 148, 249, 448, 667
PspXI VCTCGAGB 1 cut(s) 129
PstI CTGCAG 1 cut(s) 318
PsuI RGATCY 1 cut(s) 665
PvuII CAGCTG 1 cut(s) 404
RsaI GTAC 2 cut(s) 472, 543
RsaNI GTAC 2 cut(s) 471, 542
RseI CAYNNNNRTG 1 cut(s) 441
SaqAI TTAA 2 cut(s) 32, 285
SatI GCNGC 5 cut(s) 379, 382, 405, 422, 627
Sau3AI GATC 5 cut(s) 6, 362, 398, 665, 697
ScaI AGTACT 1 cut(s) 472
SchI GAGTC 3 cut(s) 265, 314, 563
ScrFI CCNGG 1 cut(s) 302
SfaNI GCATC 1 cut(s) 600
SfcI CTRYAG 3 cut(s) 39, 314, 686
Sfr274I CTCGAG 1 cut(s) 129
SlaI CTCGAG 1 cut(s) 129
SmiMI CAYNNNNRTG 1 cut(s) 441
SmlI CTYRAG 1 cut(s) 129
SmoI CTYRAG 1 cut(s) 129
Sse9I AATT 6 cut(s) 78, 238, 282, 371, 426, 654
SsiI CCGC 2 cut(s) 422, 669
SspMI CTAG 3 cut(s) 455, 549, 584
StyD4I CCNGG 1 cut(s) 300
StyI CCWWGG 1 cut(s) 243
TaiI ACGT 1 cut(s) 108
TaqI TCGA 3 cut(s) 130, 308, 608
TasI AATT 6 cut(s) 78, 238, 282, 371, 426, 654
TatI WGTACW 2 cut(s) 470, 541
TauI GCSGC 1 cut(s) 424
TfiI GAWTC 1 cut(s) 310
Tru1I TTAA 2 cut(s) 32, 285
Tru9I TTAA 2 cut(s) 32, 285
TseI GCWGC 4 cut(s) 378, 381, 404, 626
TspDTI ATGAA 5 cut(s) 43, 209, 384, 481, 693
TspGWI ACGGA 2 cut(s) 175, 578
VspI ATTAAT 1 cut(s) 32
XapI RAATTY 3 cut(s) 78, 238, 426
XceI RCATGY 1 cut(s) 548
XhoI CTCGAG 1 cut(s) 129
XspI CTAG 3 cut(s) 455, 549, 584
ZraI GACGTC 1 cut(s) 106
ZrmI AGTACT 1 cut(s) 472
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.