Rmu_sc0000071.1_g000017

Glycosyltransferase family 17

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000071.1
OG0004922
Physical Location & Seq
Forward (+)
70074 .. 70958
885 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 885 bp
atgtctcacctctgcagacttcacggttggggaatccgcgagtaccctaggcgtgtatatgatgctgtgttgttcaataatgagatagacatccttacaatacgatggaaagaactgtatccttacgtaactaaatttgttctcctggagtcaaattcaacgttttctggaattatcaagcctttgtattttgcaagaaacctggatcagttcgactttgttgaaccccggttggtttatgggagggttggaagaacatccaagaaaggagaaaacccatttgtggaagaggcatatcagcgaagagtattggactttctcctccaagaaaaaactggtattaccgacgatgacttgttgataatgtctgatgttgatgagattccaagcagacacactatcaatctcctgaggtggtgtgatgatattcctcaagttcttcatcttcggctgaagaactatctttattccttcgagtttcttgtggacaacaacagttggagggcctcagtacacaggtatcaagagaatgtgaccaaatatgcacactttcgccagacagatgatatcctggcagatgcagggtggcattgcagcttttgttttcgcagaatcagtgagttcatatttaagatgaaggcatacagtcacaatgatcgtatcagatttaacaagtatctaaaccctaaaagagttcaggatgtaatctgcaagggagccgatttgtttgacatgcttccagaagagtacacattcaaggaaatcattggcaaaatgggccctattcctcattcctactcagctgttcatctcccagcatatctattggagaatgcagacaagtataaattcctgttgcctgggaattgcgaaaggcaaagctag

Protein Analysis

294

Amino Acids

34.96

Weight (kDa)

7.65

Isoelectric Point (pI)

42.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_17 PF04724 1 - 293 1.3e-156 Glycosyltransferase family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 39
AciI CCGC 1 cut(s) 37
AclI AACGTT 1 cut(s) 161
AclWI GGATC 1 cut(s) 213
AcsI RAATTY 3 cut(s) 134, 154, 848
AcuI CTGAAG 1 cut(s) 473
AfaI GTAC 3 cut(s) 44, 513, 749
AfiI CCNNNNNNNGG 1 cut(s) 283
AgsI TTSAA 4 cut(s) 76, 159, 224, 757
AjnI CCWGG 4 cut(s) 144, 201, 570, 859
AluBI AGCT 3 cut(s) 597, 803, 882
AluI AGCT 3 cut(s) 597, 803, 882
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 1 cut(s) 213
AoxI GGCC 2 cut(s) 504, 778
ApaI GGGCCC 1 cut(s) 782
ApeKI GCWGC 1 cut(s) 594
ApoI RAATTY 3 cut(s) 134, 154, 848
AspA2I CCTAGG 1 cut(s) 47
AspS9I GGNCC 3 cut(s) 504, 778, 779
AsuC2I CCSGG 1 cut(s) 229
AvrII CCTAGG 1 cut(s) 47
AxyI CCTNAGG 1 cut(s) 410
BaeGI GKGCMC 1 cut(s) 782
BaeI ACNNNNGTAYC 2 cut(s) 503, 536
BanII GRGCYC 1 cut(s) 782
BbvI GCAGC 1 cut(s) 606
BccI CCATC 1 cut(s) 99
BciT130I CCWGG 4 cut(s) 146, 203, 572, 861
BciVI GTATCC 1 cut(s) 129
BcnI CCSGG 1 cut(s) 229
BcoDI GTCTC 1 cut(s) 9
BfaI CTAG 2 cut(s) 48, 883
BfmI CTRYAG 1 cut(s) 13
BfuI GTATCC 1 cut(s) 129
BisI GCNGC 1 cut(s) 595
BlnI CCTAGG 1 cut(s) 47
BlsI GCNGC 1 cut(s) 596
Bme1390I CCNGG 5 cut(s) 146, 203, 229, 572, 861
BmgT120I GGNCC 3 cut(s) 504, 778, 779
BmiI GGNNCC 2 cut(s) 718, 780
BmrFI CCNGG 5 cut(s) 146, 203, 229, 572, 861
BmsI GCATC 2 cut(s) 52, 568
BpmI CTGGAG 1 cut(s) 167
BpuEI CTTGAG 1 cut(s) 417
BpuMI CCSGG 1 cut(s) 229
BsaAI YACGTR 1 cut(s) 127
BsaBI GATNNNNATC 1 cut(s) 89
BsaJI CCNNGG 3 cut(s) 47, 227, 860
Bsc4I CCNNNNNNNGG 1 cut(s) 283
Bse1I ACTGG 1 cut(s) 340
Bse21I CCTNAGG 1 cut(s) 410
Bse3DI GCAATG 1 cut(s) 589
Bse8I GATNNNNATC 1 cut(s) 89
BseBI CCWGG 4 cut(s) 146, 203, 572, 861
BseDI CCNNGG 3 cut(s) 47, 227, 860
BseGI GGATG 3 cut(s) 90, 257, 706
BseJI GATNNNNATC 1 cut(s) 89
BseLI CCNNNNNNNGG 1 cut(s) 283
BseMI GCAATG 1 cut(s) 589
BseMII CTCAG 3 cut(s) 401, 522, 813
BseNI ACTGG 1 cut(s) 340
BseRI GAGGAG 1 cut(s) 311
BseSI GKGCMC 1 cut(s) 782
BseXI GCAGC 1 cut(s) 606
BseYI CCCAGC 1 cut(s) 814
Bsh1236I CGCG 1 cut(s) 39
BshFI GGCC 2 cut(s) 506, 780
BsiSI CCGG 1 cut(s) 229
BslI CCNNNNNNNGG 1 cut(s) 283
BsmAI GTCTC 1 cut(s) 9
BsmI GAATGC 1 cut(s) 838
BsnI GGCC 2 cut(s) 506, 780
Bsp120I GGGCCC 1 cut(s) 778
Bsp1286I GDGCHC 1 cut(s) 782
Bsp143I GATC 2 cut(s) 205, 655
BspACI CCGC 1 cut(s) 37
BspANI GGCC 2 cut(s) 506, 780
BspCNI CTCAG 3 cut(s) 402, 521, 812
BspFNI CGCG 1 cut(s) 39
BspLI GGNNCC 2 cut(s) 718, 780
BspMAI CTGCAG 1 cut(s) 17
BspPI GGATC 1 cut(s) 213
BsrDI GCAATG 1 cut(s) 589
BsrI ACTGG 1 cut(s) 340
BssECI CCNNGG 3 cut(s) 47, 227, 860
BssMI GATC 2 cut(s) 205, 655
BssT1I CCWWGG 1 cut(s) 47
Bst2UI CCWGG 4 cut(s) 146, 203, 572, 861
Bst4CI ACNGT 4 cut(s) 26, 117, 497, 647
Bst6I CTCTTC 3 cut(s) 282, 298, 738
BstBAI YACGTR 1 cut(s) 127
BstDEI CTNAG 3 cut(s) 410, 508, 799
BstF5I GGATG 3 cut(s) 90, 257, 706
BstFNI CGCG 1 cut(s) 39
BstKTI GATC 2 cut(s) 208, 658
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 2 cut(s) 205, 655
BstMWI GCNNNNNNNGC 1 cut(s) 777
BstNI CCWGG 4 cut(s) 146, 203, 572, 861
BstNSI RCATGY 1 cut(s) 736
BstSCI CCNGG 5 cut(s) 144, 201, 227, 570, 859
BstSFI CTRYAG 1 cut(s) 13
BstSLI GKGCMC 1 cut(s) 782
BstSNI TACGTA 1 cut(s) 127
BstUI CGCG 1 cut(s) 39
BstV1I GCAGC 1 cut(s) 606
Bsu36I CCTNAGG 1 cut(s) 410
BsuI GTATCC 1 cut(s) 129
BsuRI GGCC 2 cut(s) 506, 780
BtsCI GGATG 3 cut(s) 90, 257, 706
BtsIMutI CAGTG 1 cut(s) 622
Cfr13I GGNCC 3 cut(s) 504, 778, 779
Csp6I GTAC 3 cut(s) 43, 512, 748
CviAII CATG 1 cut(s) 733
CviJI RGCY 8 cut(s) 181, 451, 506, 597, 719, 780, 803, 882
CviKI_1 RGCY 8 cut(s) 181, 451, 506, 597, 719, 780, 803, 882
CviQI GTAC 3 cut(s) 43, 512, 748
DdeI CTNAG 3 cut(s) 410, 508, 799
DpnI GATC 2 cut(s) 207, 657
DpnII GATC 2 cut(s) 205, 655
Eam1104I CTCTTC 3 cut(s) 282, 298, 738
EarI CTCTTC 3 cut(s) 282, 298, 738
Eco105I TACGTA 1 cut(s) 127
Eco130I CCWWGG 1 cut(s) 47
Eco24I GRGCYC 1 cut(s) 782
Eco32I GATATC 1 cut(s) 568
Eco57I CTGAAG 1 cut(s) 473
Eco81I CCTNAGG 1 cut(s) 410
EcoO109I RGGNCCY 2 cut(s) 504, 779
EcoRII CCWGG 4 cut(s) 144, 201, 570, 859
EcoRV GATATC 1 cut(s) 568
EcoT14I CCWWGG 1 cut(s) 47
EcoT38I GRGCYC 1 cut(s) 782
ErhI CCWWGG 1 cut(s) 47
FaeI CATG 1 cut(s) 736
FatI CATG 1 cut(s) 732
Fnu4HI GCNGC 1 cut(s) 595
FokI GGATG 3 cut(s) 77, 244, 713
FriOI GRGCYC 1 cut(s) 782
Fsp4HI GCNGC 1 cut(s) 595
FspBI CTAG 2 cut(s) 48, 883
GluI GCNGC 1 cut(s) 595
GsaI CCCAGC 1 cut(s) 818
GsuI CTGGAG 1 cut(s) 167
HaeIII GGCC 2 cut(s) 506, 780
HapII CCGG 1 cut(s) 229
Hin1II CATG 1 cut(s) 736
HinfI GANTC 4 cut(s) 33, 149, 382, 612
HpaII CCGG 1 cut(s) 229
Hpy166II GTNNAC 3 cut(s) 487, 514, 750
Hpy188I TCNGA 2 cut(s) 370, 665
Hpy188III TCNNGA 5 cut(s) 168, 409, 524, 698, 740
Hpy8I GTNNAC 3 cut(s) 487, 514, 750
Hpy99I CGWCG 1 cut(s) 350
HpyAV CCTTC 2 cut(s) 481, 631
HpyCH4III ACNGT 4 cut(s) 26, 117, 497, 647
HpyCH4IV ACGT 2 cut(s) 126, 161
HpyCH4V TGCA 7 cut(s) 15, 194, 545, 581, 594, 711, 836
HpyF10VI GCNNNNNNNGC 1 cut(s) 777
HpyF3I CTNAG 3 cut(s) 410, 508, 799
HpySE526I ACGT 2 cut(s) 126, 161
Hsp92II CATG 1 cut(s) 736
Kzo9I GATC 2 cut(s) 205, 655
LmnI GCTCC 1 cut(s) 716
Lsp1109I GCAGC 1 cut(s) 606
LweI GCATC 2 cut(s) 52, 568
MaeI CTAG 2 cut(s) 48, 883
MaeII ACGT 2 cut(s) 126, 161
MaeIII GTNAC 3 cut(s) 127, 532, 647
MalI GATC 2 cut(s) 207, 657
MboI GATC 2 cut(s) 205, 655
MboII GAAGA 7 cut(s) 264, 299, 315, 431, 437, 466, 755
MhlI GDGCHC 1 cut(s) 782
MluCI AATT 5 cut(s) 134, 154, 171, 848, 865
MlyI GAGTC 1 cut(s) 158
MmeI TCCRAC 2 cut(s) 229, 479
MnlI CCTC 9 cut(s) 20, 237, 283, 332, 405, 441, 495, 517, 798
MseI TTAA 2 cut(s) 630, 669
MspA1I CMGCKG 1 cut(s) 803
MspI CCGG 1 cut(s) 229
MspR9I CCNGG 5 cut(s) 146, 203, 229, 572, 861
Mva1269I GAATGC 1 cut(s) 838
MvaI CCWGG 4 cut(s) 146, 203, 572, 861
MvnI CGCG 1 cut(s) 39
MwoI GCNNNNNNNGC 1 cut(s) 777
NciI CCSGG 1 cut(s) 229
NdeII GATC 2 cut(s) 205, 655
NlaIII CATG 1 cut(s) 736
NlaIV GGNNCC 2 cut(s) 718, 780
NmuCI GTSAC 2 cut(s) 532, 647
NspI RCATGY 1 cut(s) 736
PctI GAATGC 1 cut(s) 838
PfeI GAWTC 3 cut(s) 33, 382, 612
PfoI TCCNGGA 1 cut(s) 144
PkrI GCNGC 1 cut(s) 596
PleI GAGTC 1 cut(s) 157
PpsI GAGTC 1 cut(s) 157
Ppu21I YACGTR 1 cut(s) 127
Psp1406I AACGTT 1 cut(s) 161
Psp6I CCWGG 4 cut(s) 144, 201, 570, 859
PspFI CCCAGC 1 cut(s) 814
PspGI CCWGG 4 cut(s) 144, 201, 570, 859
PspN4I GGNNCC 2 cut(s) 718, 780
PspOMI GGGCCC 1 cut(s) 778
PspPI GGNCC 3 cut(s) 504, 778, 779
PstI CTGCAG 1 cut(s) 17
PvuII CAGCTG 1 cut(s) 803
RsaI GTAC 3 cut(s) 44, 513, 749
RsaNI GTAC 3 cut(s) 43, 512, 748
SaqAI TTAA 2 cut(s) 630, 669
SatI GCNGC 1 cut(s) 595
Sau3AI GATC 2 cut(s) 205, 655
Sau96I GGNCC 3 cut(s) 504, 778, 779
SchI GAGTC 1 cut(s) 158
ScrFI CCNGG 5 cut(s) 146, 203, 229, 572, 861
SduI GDGCHC 1 cut(s) 782
SetI ASST 9 cut(s) 12, 129, 164, 204, 416, 521, 599, 805, 884
SfaNI GCATC 2 cut(s) 52, 568
SfcI CTRYAG 1 cut(s) 13
SmlI CTYRAG 1 cut(s) 432
SmoI CTYRAG 1 cut(s) 432
SnaBI TACGTA 1 cut(s) 127
Sse9I AATT 5 cut(s) 134, 154, 171, 848, 865
SsiI CCGC 1 cut(s) 37
SspMI CTAG 2 cut(s) 48, 883
StyD4I CCNGG 5 cut(s) 144, 201, 227, 570, 859
StyI CCWWGG 1 cut(s) 47
TaaI ACNGT 4 cut(s) 26, 117, 497, 647
TaiI ACGT 2 cut(s) 129, 164
TaqI TCGA 2 cut(s) 213, 474
TasI AATT 5 cut(s) 134, 154, 171, 848, 865
TatI WGTACW 2 cut(s) 511, 747
TfiI GAWTC 3 cut(s) 33, 382, 612
Tru1I TTAA 2 cut(s) 630, 669
Tru9I TTAA 2 cut(s) 630, 669
TscAI CASTG 1 cut(s) 622
TseFI GTSAC 2 cut(s) 532, 647
TseI GCWGC 1 cut(s) 594
Tsp45I GTSAC 2 cut(s) 532, 647
TspDTI ATGAA 4 cut(s) 431, 613, 650, 797
TspRI CASTG 1 cut(s) 622
XapI RAATTY 3 cut(s) 134, 154, 848
XceI RCATGY 1 cut(s) 736
XcmI CCANNNNNNNNNTGG 1 cut(s) 332
XmaJI CCTAGG 1 cut(s) 47
XspI CTAG 2 cut(s) 48, 883
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.