Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000117.1

Orthogroup ID

OG0009713

Physical Location & Seq

Genomic Coordinates Reverse (-)

165723 .. 170835

Gene Structure 5113 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000117.1_g000033.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3015 bp

atgcaacctaggaggcacgagagtttcaatagacagcagcctccggcttctaaattacgtcccacctaccgattcgaatccggtgccaacaaccacccttatagtagtggtagtaggaggagacctgaggaggtacatcggaatattaggaggagtttgagcccgcaacaagatcatctgggtgtcagtcaaaggaatgttgcttctattcagagggagtatggctggcatttgggtggcggtaggactgatggcgtccgccgcaggtcaacatccgggtcacccctactgccttttggtgaaatgcgaaaaatgtcacaatttgaggaggaggaggatggggatttgcggaggagttattcaccaccaccacaaccaccggtacctgttccggcatctgttcctttggagttaaaacacagacgtgatagcgttgaggctggaaattatagtgtcaatgatgatttgaatagtaggagagtttatggctccgagcataatgattttggaatcagtaaagaagatttgaatgaaagcagattgacagctggtggtaaacatgggacattgggtcaaaaaccaatccatatggaagatagtgctgtaagaggatccaaaaccatgtttatcaaaggtgacaccgtgcatggagcatatcattcttctccaagccttggtactgttataactcaaggagcaaggggtggccacctaccatcatcaacgcgcagcatgagcatacgccattctgaccaagaaaggcttcagtatgcagaccctatatctttggatagattaccagtgacagaagcctacaaagaaggaaataaacccgtttttcctacaagagatggcttttattccatgatgtctggatctcattccaagaattattttgctagctcctcaacagggttgaggaatgaattccaagattcctatcagcatgagcagcatatgccttctttggaagaattttcaagaagtagtagaaaacttaaagattctgtgagcattaatgcatatagggaaaggccggttgtagagttttctcgagaccctgattctgggcagaagaatctgacattttaccagagagatagtcctactagagttgagtatgatgatgattattatttctacccaaactcaagaggaatgatatttgacgatcgtgagcttccatctgatcacttacacaaagtgatgcatccacgagcaccacttgactatgaccattctcggatgggttatgatcatagaactgtgtcaagatctagtaccatgctccctgttgtggaaagaattgataatactgaggattattctggaaattcaaggaagcgcattatgctgaataattctactttagaaaggcatacactttcagactaccctgatataagcagaatatcaagtgcatcaaagcagagtggagaatatatgggttctggacgcatgcatgacaagtttggaaggagaatttcacaagattatgaaacatcgcatttgggtgcagcgcaagtttgtcaaatctcacatctgaaagaagattatggttatgaaagagatggaaacctgaagtttcaggacagacagtgtcctgtgtctaaatacgacccagaaatgcatagaaatacgattagaatgcagagtatgagagacaagcttggggtatatgaaccatcagatagggtggtgaaaagaaaatatgttaatgaagagcatggaagtatccagaatcctagagaaattatgtcaggtaaatggaatacctctagagagtttcaagatttgtatgatagtggtgaagagtggaatggtgaagatgtaggatctatgtatacatctagatcagcaagattgggccataatgaacactataaggcccagaggaaatatgctggaatagaccagtatgatgaatttgtatctgatgatcgcctgccgtctcaagactcgttggcagatgcacaaaggcactcagttagatattataaacatggtgatcggtatgccaagggtcaccaaaactatggttcattaagtaggcataggtcacagcaagttgacataaaaagtggctttcacaaacagcacaaggtttggaagagaaatgataattatctagaggatgtccacagaggtgatgataatgatgctgatacatcagaaaatgggttgagttctgcagctcctgagccatcagaggattctgaggagtttatgcaattggtacaagaagccttcctaacatactctaaacaattaaatatgaaccctggtgttcggagaagatacatggaacaaggaaaggctgggactttattctgcatcgtatgtggccgaagctactcgaaggagttcatggacacccaacgattggtaacacatgcatttatgtctaaaaaagctggattgaggacacaacacttgggacttctcaaagcagtttgtgctctgttggggtggagtactgttatccccactgacatagtactatgggttccccaggtcttgcccaaggcagaagctttggctcagaaggaagatttgattctttggcctccagtgattattatccacaatatttctatgtcagacaacaatcctgaaaattggaaggttgtaagcattgaagctctggaggcttttctaagaggtaaaggtttaattaggggaagaatcaagatgtgcctggggaagcctgctgatcaaagtgttgtgttggtgaagttcttgggaactttcactgggcttgggaatgcagagaggattcataagtattttgcagagcagaaccgtggcagagcagactttgagcgagcaacgtccaacaacggaaaaattgtggaagcaggaatgcagggagacagtgtggaggagcgatttttacatggatatatggggattgcggaggacttagataaagtagattttaataccaggaactggagtttgataaagagcaagaaggagattcaggacctggccaatgctcctgttaaaccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

1004

Amino Acids

114.75

Weight (kDa)

8.47

Isoelectric Point (pI)

61.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009713)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g05850 FvH4_7g05850 FvH4_7g05850
malus_domestica	MD02G1254600.v1.1 MD07G1067200.v1.1
prunus_persica	Prupe.2G084400_v2.0.a1 Prupe.2G084400_v2.0.a1
pyrus_communis	pycom02g21450 pycom07g05140
rosa_chinensis	RchiOBHm_Chr1g0332961
rosa_laevigata	RLG00000029630
rosa_multiflora	Rmu_co8522447.1_g000002 Rmu_sc0000117.1_g000033 Rmu_sc0000813.1_g000010
rosa_roxburghii	Rroxscaffold_4G00317840
rosa_rugosa	Rorug01G0106200
rosa_samantha	Rh1AG129400 Rh1BG098600 Rh1CG123300 Rh1DG135200
rosa_wichuraiana	Rw0G014350 Rw1G010360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	686, 1998
Acc36I	ACCTGC	1 cut(s)	255
Acc65I	GGTACC	1 cut(s)	382
AccB1I	GGYRCC	2 cut(s)	83, 382
AccB7I	CCANNNNNTGG	3 cut(s)	674, 2383, 2952
AccI	GTMKAC	1 cut(s)	1844
AccII	CGCG	1 cut(s)	727
AciI	CCGC	6 cut(s)	164, 240, 259, 262, 349, 2915
AclWI	GGATC	4 cut(s)	606, 619, 883, 1843
AcoI	YGGCCR	3 cut(s)	706, 2344, 2991
AcsI	RAATTY	5 cut(s)	926, 974, 1333, 1482, 1925
AcuI	CTGAAG	2 cut(s)	749, 1601
AcyI	GRCGYC	1 cut(s)	255
AdeI	CACNNNGTG	1 cut(s)	1204
AfaI	GTAC	7 cut(s)	135, 384, 679, 1282, 2238, 2476, 2499
AfiI	CCNNNNNNNGG	6 cut(s)	674, 912, 1067, 1297, 2383, 2952
AgeI	ACCGGT	1 cut(s)	379
AgsI	TTSAA	7 cut(s)	28, 469, 529, 981, 1338, 1790, 2639
AhdI	GACNNNNNGTC	1 cut(s)	570
AjiI	CACGTC	1 cut(s)	425
AjnI	CCWGG	5 cut(s)	2281, 2511, 2697, 2945, 2988
AjuI	GAANNNNNNNTTGG	2 cut(s)	747, 779
AleI	CACNNNNGTG	2 cut(s)	423, 2145
AluBI	AGCT	9 cut(s)	548, 903, 1180, 1669, 2195, 2352, 2414, 2534, 2642
AluI	AGCT	9 cut(s)	548, 903, 1180, 1669, 2195, 2352, 2414, 2534, 2642
Alw21I	GWGCWC	2 cut(s)	1222, 2461
Alw26I	GTCTC	5 cut(s)	115, 1050, 1656, 1956, 2865
AlwI	GGATC	4 cut(s)	606, 619, 883, 1843
AlwNI	CAGNNNCTG	3 cut(s)	2198, 2952, 2989
Ama87I	CYCGRG	1 cut(s)	1053
AoxI	GGCC	7 cut(s)	706, 1034, 1867, 1887, 2344, 2564, 2991
ApeKI	GCWGC	5 cut(s)	37, 729, 952, 1517, 2192
ApoI	RAATTY	5 cut(s)	926, 974, 1333, 1482, 1925
AseI	ATTAAT	1 cut(s)	1017
AsiGI	ACCGGT	1 cut(s)	379
Asp700I	GAANNNNTTC	3 cut(s)	762, 926, 2363
Asp718I	GGTACC	1 cut(s)	382
AspA2I	CCTAGG	1 cut(s)	8
AspLEI	GCGC	3 cut(s)	729, 1347, 1522
AspS9I	GGNCC	3 cut(s)	1867, 1888, 2986
AsuC2I	CCSGG	1 cut(s)	277
AsuII	TTCGAA	1 cut(s)	75
AsuNHI	GCTAGC	1 cut(s)	899
AvaI	CYCGRG	1 cut(s)	1053
AvaII	GGWCC	1 cut(s)	2986
AvrII	CCTAGG	1 cut(s)	8
AxyI	CCTNAGG	1 cut(s)	126
BalI	TGGCCA	2 cut(s)	708, 2993
BamHI	GGATCC	1 cut(s)	611
BanI	GGYRCC	2 cut(s)	83, 382
BanII	GRGCYC	1 cut(s)	164
BauI	CACGAG	2 cut(s)	17, 1215
Bbv12I	GWGCWC	2 cut(s)	1222, 2461
BbvI	GCAGC	5 cut(s)	49, 741, 964, 1529, 2204
BccI	CCATC	9 cut(s)	245, 332, 724, 845, 1192, 1240, 1565, 1693, 2212
BceAI	ACGGC	1 cut(s)	1933
BcgI	CGANNNNNNTGC	4 cut(s)	65, 99, 1630, 1664
BciT130I	CCWGG	5 cut(s)	2283, 2513, 2699, 2947, 2990
BciVI	GTATCC	1 cut(s)	1745
BclI	TGATCA	3 cut(s)	1189, 1255, 2713
BcnI	CCSGG	1 cut(s)	277
BcoDI	GTCTC	5 cut(s)	115, 1050, 1656, 1956, 2865
BfaI	CTAG	8 cut(s)	9, 900, 1110, 1278, 1746, 1779, 1851, 2129
BfmI	CTRYAG	1 cut(s)	2190
BfuAI	ACCTGC	1 cut(s)	255
BfuI	GTATCC	1 cut(s)	1745
BglII	AGATCT	1 cut(s)	1274
BisI	GCNGC	6 cut(s)	38, 262, 730, 953, 1518, 2193
BlnI	CCTAGG	1 cut(s)	8
BlsI	GCNGC	6 cut(s)	39, 263, 731, 954, 1519, 2194
BmcAI	AGTACT	2 cut(s)	2476, 2499
Bme1390I	CCNGG	6 cut(s)	277, 2283, 2513, 2699, 2947, 2990
Bme18I	GGWCC	1 cut(s)	2986
BmeRI	GACNNNNNGTC	1 cut(s)	570
BmeT110I	CYCGRG	1 cut(s)	1053
BmgBI	CACGTC	1 cut(s)	425
BmgT120I	GGNCC	3 cut(s)	1867, 1888, 2986
BmiI	GGNNCC	5 cut(s)	85, 384, 490, 613, 2508
BmrFI	CCNGG	6 cut(s)	277, 2283, 2513, 2699, 2947, 2990
BmrI	ACTGGG	1 cut(s)	2763
BmsI	GCATC	7 cut(s)	404, 1197, 1219, 1430, 1960, 2149, 2343
BmtI	GCTAGC	1 cut(s)	903
BmuI	ACTGGG	1 cut(s)	2763
BpmI	CTGGAG	3 cut(s)	2553, 2666, 2974
Bpu10I	CCTNAGC	1 cut(s)	2199
Bpu14I	TTCGAA	1 cut(s)	75
BpuEI	CTTGAG	3 cut(s)	675, 1135, 1938
BpuMI	CCSGG	1 cut(s)	277
BsaBI	GATNNNNATC	4 cut(s)	76, 939, 2124, 2579
BsaHI	GRCGYC	1 cut(s)	255
BsaI	GGTCTC	2 cut(s)	115, 1050
BsaJI	CCNNGG	8 cut(s)	8, 673, 2019, 2281, 2511, 2523, 2698, 2803
BsaWI	WCCGGW	2 cut(s)	80, 379
BsaXI	ACNNNNNCTCC	2 cut(s)	2862, 2892
Bsc4I	CCNNNNNNNGG	6 cut(s)	674, 912, 1067, 1297, 2383, 2952
Bse118I	RCCGGY	2 cut(s)	379, 1036
Bse1I	ACTGG	5 cut(s)	800, 1915, 2570, 2758, 2957
Bse21I	CCTNAGG	1 cut(s)	126
Bse8I	GATNNNNATC	4 cut(s)	76, 939, 2124, 2579
BseBI	CCWGG	5 cut(s)	2283, 2513, 2699, 2947, 2990
BseDI	CCNNGG	8 cut(s)	8, 673, 2019, 2281, 2511, 2523, 2698, 2803
BseGI	GGATG	5 cut(s)	272, 343, 1210, 1251, 2140
BseJI	GATNNNNATC	4 cut(s)	76, 939, 2124, 2579
BseLI	CCNNNNNNNGG	6 cut(s)	674, 912, 1067, 1297, 2383, 2952
BseMII	CTCAG	6 cut(s)	117, 1308, 1998, 2190, 2208, 2555
BseNI	ACTGG	5 cut(s)	800, 1915, 2570, 2758, 2957
BseXI	GCAGC	5 cut(s)	49, 741, 964, 1529, 2204
BseYI	CCCAGC	1 cut(s)	2318
BsgI	GTGCAG	1 cut(s)	1536
Bsh1236I	CGCG	1 cut(s)	727
Bsh1285I	CGRYCG	1 cut(s)	1174
BshFI	GGCC	7 cut(s)	708, 1036, 1869, 1889, 2346, 2566, 2993
BshNI	GGYRCC	2 cut(s)	83, 382
BshTI	ACCGGT	1 cut(s)	379
BsiEI	CGRYCG	1 cut(s)	1174
BsiHKAI	GWGCWC	2 cut(s)	1222, 2461
BsiHKCI	CYCGRG	1 cut(s)	1053
BsiSI	CCGG	6 cut(s)	44, 81, 276, 380, 392, 1037
BslFI	GGGAC	4 cut(s)	45, 577, 2335, 2451
BslI	CCNNNNNNNGG	6 cut(s)	674, 912, 1067, 1297, 2383, 2952
BsmAI	GTCTC	5 cut(s)	115, 1050, 1656, 1956, 2865
BsmBI	CGTCTC	1 cut(s)	1956
BsmFI	GGGAC	4 cut(s)	45, 577, 2335, 2451
BsmI	GAATGC	3 cut(s)	1653, 2770, 2868
BsnI	GGCC	7 cut(s)	708, 1036, 1869, 1889, 2346, 2566, 2993
Bso31I	GGTCTC	2 cut(s)	115, 1050
BsoBI	CYCGRG	1 cut(s)	1053
Bsp119I	TTCGAA	1 cut(s)	75
Bsp1286I	GDGCHC	3 cut(s)	164, 1222, 2461
BspACI	CCGC	6 cut(s)	164, 240, 259, 262, 349, 2915
BspANI	GGCC	7 cut(s)	708, 1036, 1869, 1889, 2346, 2566, 2993
BspCNI	CTCAG	6 cut(s)	118, 1309, 1997, 2191, 2209, 2554
BspFNI	CGCG	1 cut(s)	727
BspLI	GGNNCC	5 cut(s)	85, 384, 490, 613, 2508
BspMAI	CTGCAG	1 cut(s)	2194
BspMI	ACCTGC	1 cut(s)	255
BspOI	GCTAGC	1 cut(s)	903
BspPI	GGATC	4 cut(s)	606, 619, 883, 1843
BspQI	GCTCTTC	1 cut(s)	1716
BspT104I	TTCGAA	1 cut(s)	75
BspT107I	GGYRCC	2 cut(s)	83, 382
BspTNI	GGTCTC	2 cut(s)	115, 1050
BsrFI	RCCGGY	2 cut(s)	379, 1036
BsrI	ACTGG	5 cut(s)	800, 1915, 2570, 2758, 2957
BssAI	RCCGGY	2 cut(s)	379, 1036
BssECI	CCNNGG	8 cut(s)	8, 673, 2019, 2281, 2511, 2523, 2698, 2803
BssNAI	GTATAC	1 cut(s)	1845
BssNI	GRCGYC	1 cut(s)	255
BssSI	CACGAG	2 cut(s)	17, 1215
BssT1I	CCWWGG	4 cut(s)	8, 673, 2019, 2523
Bst1107I	GTATAC	1 cut(s)	1845
Bst2BI	CACGAG	2 cut(s)	17, 1215
Bst2UI	CCWGG	5 cut(s)	2283, 2513, 2699, 2947, 2990
Bst4CI	ACNGT	7 cut(s)	643, 682, 1267, 1599, 2479, 2804, 2876
Bst6I	CTCTTC	3 cut(s)	1716, 1806, 2105
BstACI	GRCGYC	1 cut(s)	255
BstAPI	GCANNNNNTGC	2 cut(s)	958, 2456
BstBI	TTCGAA	1 cut(s)	75
BstC8I	GCNNGC	7 cut(s)	164, 227, 901, 1460, 1946, 2709, 2826
BstDEI	CTNAG	8 cut(s)	126, 1317, 1984, 2199, 2217, 2541, 2657, 2923
BstDSI	CCRYGG	1 cut(s)	2803
BstEII	GGTNACC	2 cut(s)	279, 2024
BstF5I	GGATG	5 cut(s)	272, 343, 1210, 1251, 2140
BstFNI	CGCG	1 cut(s)	727
BstHHI	GCGC	3 cut(s)	729, 1347, 1522
BstMAI	GTCTC	5 cut(s)	115, 1050, 1656, 1956, 2865
BstMCI	CGRYCG	1 cut(s)	1174
BstMWI	GCNNNNNNNGC	7 cut(s)	261, 735, 952, 958, 1351, 2456, 2648
BstNI	CCWGG	5 cut(s)	2283, 2513, 2699, 2947, 2990
BstNSI	RCATGY	2 cut(s)	1462, 2396
BstPI	GGTNACC	2 cut(s)	279, 2024
BstSCI	CCNGG	6 cut(s)	275, 2281, 2511, 2697, 2945, 2988
BstSFI	CTRYAG	1 cut(s)	2190
BstUI	CGCG	1 cut(s)	727
BstV1I	GCAGC	5 cut(s)	49, 741, 964, 1529, 2204
BstX2I	RGATCY	4 cut(s)	611, 875, 1274, 1835
BstXI	CCANNNNNNTGG	1 cut(s)	2036
BstYI	RGATCY	4 cut(s)	611, 875, 1274, 1835
BstZ17I	GTATAC	1 cut(s)	1845
Bsu36I	CCTNAGG	1 cut(s)	126
BsuI	GTATCC	1 cut(s)	1745
BsuRI	GGCC	7 cut(s)	708, 1036, 1869, 1889, 2346, 2566, 2993
BtgI	CCRYGG	1 cut(s)	2803
BtgZI	GCGATG	1 cut(s)	1488
BtrI	CACGTC	1 cut(s)	425
BtsCI	GGATG	5 cut(s)	272, 343, 1210, 1251, 2140
BtsIMutI	CAGTG	6 cut(s)	807, 1604, 2487, 2577, 2751, 2881
BveI	ACCTGC	1 cut(s)	255
Cac8I	GCNNGC	7 cut(s)	164, 227, 901, 1460, 1946, 2709, 2826
CaiI	CAGNNNCTG	3 cut(s)	2198, 2952, 2989
CfoI	GCGC	3 cut(s)	729, 1347, 1522
Cfr10I	RCCGGY	2 cut(s)	379, 1036
Cfr13I	GGNCC	3 cut(s)	1867, 1888, 2986
CseI	GACGC	2 cut(s)	244, 1464
Csp6I	GTAC	7 cut(s)	134, 383, 678, 1281, 2237, 2475, 2498
CspAI	ACCGGT	1 cut(s)	379
CviQI	GTAC	7 cut(s)	134, 383, 678, 1281, 2237, 2475, 2498
DdeI	CTNAG	8 cut(s)	126, 1317, 1984, 2199, 2217, 2541, 2657, 2923
DraIII	CACNNNGTG	1 cut(s)	1204
DriI	GACNNNNNGTC	1 cut(s)	570
EaeI	YGGCCR	3 cut(s)	706, 2344, 2991
Eam1104I	CTCTTC	3 cut(s)	1716, 1806, 2105
Eam1105I	GACNNNNNGTC	1 cut(s)	570
EarI	CTCTTC	3 cut(s)	1716, 1806, 2105
EciI	GGCGGA	1 cut(s)	248
Eco130I	CCWWGG	4 cut(s)	8, 673, 2019, 2523
Eco24I	GRGCYC	1 cut(s)	164
Eco31I	GGTCTC	2 cut(s)	115, 1050
Eco47I	GGWCC	1 cut(s)	2986
Eco57I	CTGAAG	2 cut(s)	749, 1601
Eco81I	CCTNAGG	1 cut(s)	126
Eco88I	CYCGRG	1 cut(s)	1053
Eco91I	GGTNACC	2 cut(s)	279, 2024
EcoO109I	RGGNCCY	1 cut(s)	2986
EcoO65I	GGTNACC	2 cut(s)	279, 2024
EcoRI	GAATTC	1 cut(s)	926
EcoRII	CCWGG	5 cut(s)	2281, 2511, 2697, 2945, 2988
EcoT14I	CCWWGG	4 cut(s)	8, 673, 2019, 2523
EcoT22I	ATGCAT	5 cut(s)	1024, 1212, 1464, 1632, 2398
EcoT38I	GRGCYC	1 cut(s)	164
ErhI	CCWWGG	4 cut(s)	8, 673, 2019, 2523
Esp3I	CGTCTC	1 cut(s)	1956
FalI	AAGNNNNNCTT	2 cut(s)	747, 779
FaqI	GGGAC	4 cut(s)	45, 577, 2335, 2451
FauI	CCCGC	1 cut(s)	171
FauNDI	CATATG	2 cut(s)	588, 957
FbaI	TGATCA	3 cut(s)	1189, 1255, 2713
FblI	GTMKAC	1 cut(s)	1844
Fnu4HI	GCNGC	6 cut(s)	38, 262, 730, 953, 1518, 2193
FokI	GGATG	5 cut(s)	259, 350, 1197, 1258, 2147
FriOI	GRGCYC	1 cut(s)	164
Fsp4HI	GCNGC	6 cut(s)	38, 262, 730, 953, 1518, 2193
FspBI	CTAG	8 cut(s)	9, 900, 1110, 1278, 1746, 1779, 1851, 2129
GlaI	GCGC	3 cut(s)	728, 1346, 1521
GluI	GCNGC	6 cut(s)	38, 262, 730, 953, 1518, 2193
GsaI	CCCAGC	1 cut(s)	2322
GsuI	CTGGAG	3 cut(s)	2553, 2666, 2974
HaeIII	GGCC	7 cut(s)	708, 1036, 1869, 1889, 2346, 2566, 2993
HapII	CCGG	6 cut(s)	44, 81, 276, 380, 392, 1037
HgaI	GACGC	2 cut(s)	244, 1464
HhaI	GCGC	3 cut(s)	729, 1347, 1522
Hin1I	GRCGYC	1 cut(s)	255
Hin6I	GCGC	3 cut(s)	727, 1345, 1520
HinP1I	GCGC	3 cut(s)	727, 1345, 1520
HincII	GTYRAC	2 cut(s)	270, 2071
HindII	GTYRAC	2 cut(s)	270, 2071
HindIII	AAGCTT	2 cut(s)	1667, 2532
HpaII	CCGG	6 cut(s)	44, 81, 276, 380, 392, 1037
Hpy166II	GTNNAC	5 cut(s)	270, 557, 1845, 2071, 2140
Hpy8I	GTNNAC	5 cut(s)	270, 557, 1845, 2071, 2140
HpyAV	CCTTC	8 cut(s)	815, 972, 1470, 2257, 2353, 2539, 2617, 2968
HpyCH4III	ACNGT	7 cut(s)	643, 682, 1267, 1599, 2479, 2804, 2876
HpyCH4IV	ACGT	3 cut(s)	58, 424, 2831
HpyF10VI	GCNNNNNNNGC	7 cut(s)	261, 735, 952, 958, 1351, 2456, 2648
HpyF3I	CTNAG	8 cut(s)	126, 1317, 1984, 2199, 2217, 2541, 2657, 2923
HpySE526I	ACGT	3 cut(s)	58, 424, 2831
Hsp92I	GRCGYC	1 cut(s)	255
HspAI	GCGC	3 cut(s)	727, 1345, 1520
KpnI	GGTACC	1 cut(s)	386
Ksp22I	TGATCA	3 cut(s)	1189, 1255, 2713
LguI	GCTCTTC	1 cut(s)	1716
LmnI	GCTCC	8 cut(s)	494, 650, 695, 908, 1293, 2200, 2884, 3004
Lsp1109I	GCAGC	5 cut(s)	49, 741, 964, 1529, 2204
LweI	GCATC	7 cut(s)	404, 1197, 1219, 1430, 1960, 2149, 2343
MaeI	CTAG	8 cut(s)	9, 900, 1110, 1278, 1746, 1779, 1851, 2129
MaeII	ACGT	3 cut(s)	58, 424, 2831
MaeIII	GTNAC	7 cut(s)	279, 315, 635, 802, 2024, 2058, 2386
MfeI	CAATTG	1 cut(s)	2231
MflI	RGATCY	4 cut(s)	611, 875, 1274, 1835
MhlI	GDGCHC	3 cut(s)	164, 1222, 2461
MlsI	TGGCCA	2 cut(s)	708, 2993
MluNI	TGGCCA	2 cut(s)	708, 2993
MlyI	GAGTC	1 cut(s)	1952
MmeI	TCCRAC	1 cut(s)	2859
Mox20I	TGGCCA	2 cut(s)	708, 2993
Mph1103I	ATGCAT	5 cut(s)	1024, 1212, 1464, 1632, 2398
MroXI	GAANNNNTTC	3 cut(s)	762, 926, 2363
MscI	TGGCCA	2 cut(s)	708, 2993
MseI	TTAA	9 cut(s)	413, 999, 1017, 1716, 2045, 2270, 2672, 2940, 3006
MslI	CAYNNNNRTG	5 cut(s)	180, 234, 423, 1512, 2145
Msp20I	TGGCCA	2 cut(s)	708, 2993
MspA1I	CMGCKG	1 cut(s)	548
MspI	CCGG	6 cut(s)	44, 81, 276, 380, 392, 1037
MspR9I	CCNGG	6 cut(s)	277, 2283, 2513, 2699, 2947, 2990
MunI	CAATTG	1 cut(s)	2231
Mva1269I	GAATGC	3 cut(s)	1653, 2770, 2868
MvaI	CCWGG	5 cut(s)	2283, 2513, 2699, 2947, 2990
MvnI	CGCG	1 cut(s)	727
MwoI	GCNNNNNNNGC	7 cut(s)	261, 735, 952, 958, 1351, 2456, 2648
NciI	CCSGG	1 cut(s)	277
NdeI	CATATG	2 cut(s)	588, 957
NheI	GCTAGC	1 cut(s)	899
NlaIV	GGNNCC	5 cut(s)	85, 384, 490, 613, 2508
NmuCI	GTSAC	6 cut(s)	279, 315, 635, 802, 2024, 2058
NsiI	ATGCAT	5 cut(s)	1024, 1212, 1464, 1632, 2398
NspI	RCATGY	2 cut(s)	1462, 2396
NspV	TTCGAA	1 cut(s)	75
OliI	CACNNNNGTG	2 cut(s)	423, 2145
PaeI	GCATGC	1 cut(s)	1462
PaeR7I	CTCGAG	1 cut(s)	1053
PciSI	GCTCTTC	1 cut(s)	1716
PctI	GAATGC	3 cut(s)	1653, 2770, 2868
PdmI	GAANNNNTTC	3 cut(s)	762, 926, 2363
PflFI	GACNNNGTC	1 cut(s)	1599
PflMI	CCANNNNNTGG	3 cut(s)	674, 2383, 2952
PinAI	ACCGGT	1 cut(s)	379
PkrI	GCNGC	6 cut(s)	39, 263, 731, 954, 1519, 2194
Ple19I	CGATCG	1 cut(s)	1174
PleI	GAGTC	1 cut(s)	1952
PpsI	GAGTC	1 cut(s)	1952
PpuMI	RGGWCCY	1 cut(s)	2986
PshBI	ATTAAT	1 cut(s)	1017
PsiI	TTATAA	2 cut(s)	686, 1998
Psp5II	RGGWCCY	1 cut(s)	2986
Psp6I	CCWGG	5 cut(s)	2281, 2511, 2697, 2945, 2988
PspEI	GGTNACC	2 cut(s)	279, 2024
PspFI	CCCAGC	1 cut(s)	2318
PspGI	CCWGG	5 cut(s)	2281, 2511, 2697, 2945, 2988
PspN4I	GGNNCC	5 cut(s)	85, 384, 490, 613, 2508
PspPI	GGNCC	3 cut(s)	1867, 1888, 2986
PspPPI	RGGWCCY	1 cut(s)	2986
PsrI	GAACNNNNNNTAC	2 cut(s)	2490, 2522
PstI	CTGCAG	1 cut(s)	2194
PstNI	CAGNNNCTG	3 cut(s)	2198, 2952, 2989
PsuI	RGATCY	4 cut(s)	611, 875, 1274, 1835
PsyI	GACNNNGTC	1 cut(s)	1599
PvuI	CGATCG	1 cut(s)	1174
PvuII	CAGCTG	1 cut(s)	548
RsaI	GTAC	7 cut(s)	135, 384, 679, 1282, 2238, 2476, 2499
RsaNI	GTAC	7 cut(s)	134, 383, 678, 1281, 2237, 2475, 2498
RseI	CAYNNNNRTG	5 cut(s)	180, 234, 423, 1512, 2145
SapI	GCTCTTC	1 cut(s)	1716
SaqAI	TTAA	9 cut(s)	413, 999, 1017, 1716, 2045, 2270, 2672, 2940, 3006
SatI	GCNGC	6 cut(s)	38, 262, 730, 953, 1518, 2193
Sau96I	GGNCC	3 cut(s)	1867, 1888, 2986
ScaI	AGTACT	2 cut(s)	2476, 2499
SchI	GAGTC	1 cut(s)	1952
ScrFI	CCNGG	6 cut(s)	277, 2283, 2513, 2699, 2947, 2990
SduI	GDGCHC	3 cut(s)	164, 1222, 2461
SfaNI	GCATC	7 cut(s)	404, 1197, 1219, 1430, 1960, 2149, 2343
SfcI	CTRYAG	1 cut(s)	2190
Sfr274I	CTCGAG	1 cut(s)	1053
SfuI	TTCGAA	1 cut(s)	75
SinI	GGWCC	1 cut(s)	2986
SlaI	CTCGAG	1 cut(s)	1053
SmiMI	CAYNNNNRTG	5 cut(s)	180, 234, 423, 1512, 2145
SmlI	CTYRAG	4 cut(s)	690, 1053, 1150, 1953
SmoI	CTYRAG	4 cut(s)	690, 1053, 1150, 1953
SphI	GCATGC	1 cut(s)	1462
SsiI	CCGC	6 cut(s)	164, 240, 259, 262, 349, 2915
SspI	AATATT	2 cut(s)	145, 2590
SspMI	CTAG	8 cut(s)	9, 900, 1110, 1278, 1746, 1779, 1851, 2129
StyD4I	CCNGG	6 cut(s)	275, 2281, 2511, 2697, 2945, 2988
StyI	CCWWGG	4 cut(s)	8, 673, 2019, 2523
TaaI	ACNGT	7 cut(s)	643, 682, 1267, 1599, 2479, 2804, 2876
TaiI	ACGT	3 cut(s)	61, 427, 2834
TaqI	TCGA	3 cut(s)	75, 1054, 2357
TatI	WGTACW	2 cut(s)	2474, 2497
TauI	GCSGC	1 cut(s)	264
Tru1I	TTAA	9 cut(s)	413, 999, 1017, 1716, 2045, 2270, 2672, 2940, 3006
Tru9I	TTAA	9 cut(s)	413, 999, 1017, 1716, 2045, 2270, 2672, 2940, 3006
TscAI	CASTG	6 cut(s)	807, 1604, 2494, 2577, 2758, 2881
TseFI	GTSAC	6 cut(s)	279, 315, 635, 802, 2024, 2058
TseI	GCWGC	5 cut(s)	37, 729, 952, 1517, 2192
Tsp45I	GTSAC	6 cut(s)	279, 315, 635, 802, 2024, 2058
TspGWI	ACGGA	1 cut(s)	2856
TspRI	CASTG	6 cut(s)	807, 1604, 2494, 2577, 2758, 2881
Tth111I	GACNNNGTC	1 cut(s)	1599
Van91I	CCANNNNNTGG	3 cut(s)	674, 2383, 2952
VpaK11BI	GGWCC	1 cut(s)	2986
VspI	ATTAAT	1 cut(s)	1017
XapI	RAATTY	5 cut(s)	926, 974, 1333, 1482, 1925
XbaI	TCTAGA	3 cut(s)	1778, 1850, 2128
XceI	RCATGY	2 cut(s)	1462, 2396
XhoI	CTCGAG	1 cut(s)	1053
XmaJI	CCTAGG	1 cut(s)	8
XmiI	GTMKAC	1 cut(s)	1844
XmnI	GAANNNNTTC	3 cut(s)	762, 926, 2363
XspI	CTAG	8 cut(s)	9, 900, 1110, 1278, 1746, 1779, 1851, 2129
ZrmI	AGTACT	2 cut(s)	2476, 2499
Zsp2I	ATGCAT	5 cut(s)	1024, 1212, 1464, 1632, 2398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.