Rorug01G0106200

XS domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0009713
Physical Location & Seq
Forward (+)
19055093 .. 19056567
1475 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0106200.1

Sequence Viewer

Length: 1074 bp
ATGAAGGGAATGAAAGGAAAACTTGTGAAGAGGTTGAAATCAATCCCAAGAGTAGTTCTTCAGGTGAAGCCACAAGATCGAGTTCTTCAGGTAAGCGCATCAGATGGGTATGTGGAAAACCTTCCAAACATCTCAGTTGTCAAATTCCACAAGGAAGAAACAGAGCAGGACAAGCTCATCAACTGCAGCAGTGTGAGAGAGCAGCAACAACCTGATATTATTGACGTCGATGAGCTTATGAGAGACCTCCTCACAGATTCTGAGGATGAAGTCGACGACGACAAAGAAAACATTACCCCAAGAGTGAAGGCAAAGGACCCAGTTGCTTCTAAGGAGTCTAAATTGAAGCAGTACCCAGATTCAGAAGCACCACCGGTACTAGAGTCGGAAATCCGTAAACAAACACCTCTATCGGAGATTGACATCTCGTCTTTCCGGCGACCGGACTTAGATTCCGGTACCCTCTTCGACCCGGACCTACTCGCCGCCTTTCGGCAAGCCGTTATTGAGTACATGAAATTGAGTGAAGCAGAGAGGAAGTCAATAACAGAGATACAAAATATTGAAAACAATGAAACAGAGGCGGAGCCGGACCCTCTATTAGGCTTCGAAGAGAAATGTCCACCTGGGAGCTTGGAGTCGGTAATTCTCTACACAACAACCCTTCGAGGGATACGAAAGACCTTCGACGATTGCAACAGCATCCGATTTCTGTTGGAGAGCTTTCGGGTTGTGTATTTCGAGCGTGATGTGTCGATGCACATGGAATTCAGACAAGAGCTGTGGAAGATTTTGGATTGCAAATCGGTTCCTCCTAAGCTTTTCATCAAGGGGAGATACATTGGGGGAGCAGAGGAGGTTTTGACGCTTCACGAGCAAGGAAAGCTGCGGCCGCTCCTTGCAGGAGTGCCGTTGGATCAATCAGATGGACCGTGTCAAGGTTGCGCTGGAGTTCGGTTTGTGGTTTGTTTCAAATGCCACGGAAGTCACAAGATCATTGCCCAAGAGGGAGAGTCTAATGTGTGCCCGCAGTGTAACGAAAATGGGTTGATTATATGCCCATATTGTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
XS

Protein Analysis

357

Amino Acids

40.39

Weight (kDa)

5.04

Isoelectric Point (pI)

50.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 215 - 281 1.3e-10 Glutaredoxin
GRXCR1-2_C PF23733 312 - 357 1.4e-16 GRXCR1/2, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 228
Acc65I GGTACC 1 cut(s) 458
AccB1I GGYRCC 1 cut(s) 458
AccBSI CCGCTC 1 cut(s) 895
AccI GTMKAC 1 cut(s) 273
AciI CCGC 5 cut(s) 486, 584, 889, 893, 1028
AclWI GGATC 1 cut(s) 924
AcoI YGGCCR 1 cut(s) 890
AcsI RAATTY 2 cut(s) 143, 767
AcuI CTGAAG 2 cut(s) 44, 71
AcyI GRCGYC 1 cut(s) 225
AfaI GTAC 4 cut(s) 353, 378, 460, 512
AfiI CCNNNNNNNGG 5 cut(s) 442, 492, 602, 669, 938
AgeI ACCGGT 1 cut(s) 373
AgsI TTSAA 4 cut(s) 37, 346, 566, 973
AhdI GACNNNNNGTC 1 cut(s) 427
AjnI CCWGG 1 cut(s) 625
AluBI AGCT 7 cut(s) 175, 235, 633, 723, 781, 820, 886
AluI AGCT 7 cut(s) 175, 235, 633, 723, 781, 820, 886
Alw26I GTCTC 1 cut(s) 237
AlwI GGATC 1 cut(s) 924
AlwNI CAGNNNCTG 1 cut(s) 260
AoxI GGCC 1 cut(s) 890
ApeKI GCWGC 3 cut(s) 186, 202, 886
ApoI RAATTY 2 cut(s) 143, 767
AsiGI ACCGGT 1 cut(s) 373
Asp700I GAANNNNTTC 1 cut(s) 120
Asp718I GGTACC 1 cut(s) 458
AspLEI GCGC 2 cut(s) 98, 947
AspS9I GGNCC 4 cut(s) 316, 475, 592, 929
AsuC2I CCSGG 1 cut(s) 473
AsuHPI GGTGA 1 cut(s) 76
AsuII TTCGAA 1 cut(s) 609
AvaII GGWCC 4 cut(s) 316, 475, 592, 929
BaeGI GKGCMC 1 cut(s) 1028
BaeI ACNNNNGTAYC 2 cut(s) 368, 401
BanI GGYRCC 1 cut(s) 458
BauI CACGAG 1 cut(s) 872
BbvI GCAGC 3 cut(s) 198, 214, 873
BccI CCATC 2 cut(s) 98, 920
BceAI ACGGC 2 cut(s) 485, 895
BciT130I CCWGG 1 cut(s) 627
BciVI GTATCC 1 cut(s) 666
BcnI CCSGG 1 cut(s) 473
BcoDI GTCTC 1 cut(s) 237
BfaI CTAG 1 cut(s) 380
BfmI CTRYAG 1 cut(s) 184
BfuI GTATCC 1 cut(s) 666
BisI GCNGC 6 cut(s) 187, 203, 486, 887, 890, 893
BlsI GCNGC 6 cut(s) 188, 204, 487, 888, 891, 894
Bme1390I CCNGG 2 cut(s) 473, 627
Bme18I GGWCC 4 cut(s) 316, 475, 592, 929
BmeRI GACNNNNNGTC 1 cut(s) 427
BmgT120I GGNCC 4 cut(s) 316, 475, 592, 929
BmiI GGNNCC 5 cut(s) 318, 460, 588, 594, 810
BmrFI CCNGG 2 cut(s) 473, 627
BmrI ACTGGG 1 cut(s) 314
BmsI GCATC 3 cut(s) 107, 711, 747
BmuI ACTGGG 1 cut(s) 314
BplI GAGNNNNNCTC 2 cut(s) 234, 266
BpmI CTGGAG 1 cut(s) 969
Bpu10I CCTNAGC 1 cut(s) 816
Bpu14I TTCGAA 1 cut(s) 609
BpuMI CCSGG 1 cut(s) 473
BsaBI GATNNNNATC 1 cut(s) 422
BsaHI GRCGYC 1 cut(s) 225
BsaI GGTCTC 1 cut(s) 237
BsaJI CCNNGG 2 cut(s) 626, 979
BsaWI WCCGGW 3 cut(s) 373, 442, 455
Bsc4I CCNNNNNNNGG 5 cut(s) 442, 492, 602, 669, 938
Bse118I RCCGGY 1 cut(s) 373
Bse1I ACTGG 1 cut(s) 320
Bse3DI GCAATG 1 cut(s) 996
Bse8I GATNNNNATC 1 cut(s) 422
BseBI CCWGG 1 cut(s) 627
BseDI CCNNGG 2 cut(s) 626, 979
BseGI GGATG 2 cut(s) 271, 702
BseJI GATNNNNATC 1 cut(s) 422
BseLI CCNNNNNNNGG 5 cut(s) 442, 492, 602, 669, 938
BseMI GCAATG 1 cut(s) 996
BseMII CTCAG 2 cut(s) 147, 252
BseNI ACTGG 1 cut(s) 320
BseRI GAGGAG 2 cut(s) 239, 869
BseSI GKGCMC 1 cut(s) 1028
BseX3I CGGCCG 1 cut(s) 890
BseXI GCAGC 3 cut(s) 198, 214, 873
Bsh1285I CGRYCG 2 cut(s) 443, 893
BshFI GGCC 1 cut(s) 892
BshNI GGYRCC 1 cut(s) 458
BshTI ACCGGT 1 cut(s) 373
BsiEI CGRYCG 2 cut(s) 443, 893
BsiSI CCGG 6 cut(s) 374, 436, 443, 456, 473, 590
BslI CCNNNNNNNGG 5 cut(s) 442, 492, 602, 669, 938
BsmAI GTCTC 1 cut(s) 237
BsnI GGCC 1 cut(s) 892
Bso31I GGTCTC 1 cut(s) 237
Bsp119I TTCGAA 1 cut(s) 609
Bsp1286I GDGCHC 1 cut(s) 1028
Bsp143I GATC 3 cut(s) 76, 916, 993
BspACI CCGC 5 cut(s) 486, 584, 889, 893, 1028
BspANI GGCC 1 cut(s) 892
BspCNI CTCAG 2 cut(s) 146, 253
BspLI GGNNCC 5 cut(s) 318, 460, 588, 594, 810
BspMAI CTGCAG 1 cut(s) 188
BspPI GGATC 1 cut(s) 924
BspT104I TTCGAA 1 cut(s) 609
BspT107I GGYRCC 1 cut(s) 458
BspTNI GGTCTC 1 cut(s) 237
BsrBI CCGCTC 1 cut(s) 895
BsrDI GCAATG 1 cut(s) 996
BsrFI RCCGGY 1 cut(s) 373
BsrI ACTGG 1 cut(s) 320
BssAI RCCGGY 1 cut(s) 373
BssECI CCNNGG 2 cut(s) 626, 979
BssMI GATC 3 cut(s) 76, 916, 993
BssNI GRCGYC 1 cut(s) 225
BssSI CACGAG 1 cut(s) 872
Bst2BI CACGAG 1 cut(s) 872
Bst2UI CCWGG 1 cut(s) 627
Bst4CI ACNGT 1 cut(s) 933
Bst6I CTCTTC 3 cut(s) 23, 470, 606
BstACI GRCGYC 1 cut(s) 225
BstBI TTCGAA 1 cut(s) 609
BstC8I GCNNGC 2 cut(s) 498, 1028
BstDEI CTNAG 5 cut(s) 133, 261, 330, 448, 816
BstDSI CCRYGG 1 cut(s) 979
BstENI CCTNNNNNAGG 1 cut(s) 600
BstF5I GGATG 2 cut(s) 271, 702
BstHHI GCGC 2 cut(s) 98, 947
BstKTI GATC 3 cut(s) 79, 919, 996
BstMAI GTCTC 1 cut(s) 237
BstMBI GATC 3 cut(s) 76, 916, 993
BstMCI CGRYCG 2 cut(s) 443, 893
BstMWI GCNNNNNNNGC 4 cut(s) 172, 874, 883, 892
BstNI CCWGG 1 cut(s) 627
BstSCI CCNGG 2 cut(s) 471, 625
BstSFI CTRYAG 1 cut(s) 184
BstSLI GKGCMC 1 cut(s) 1028
BstV1I GCAGC 3 cut(s) 198, 214, 873
BstZI CGGCCG 1 cut(s) 890
BsuI GTATCC 1 cut(s) 666
BsuRI GGCC 1 cut(s) 892
BtgI CCRYGG 1 cut(s) 979
BtsCI GGATG 2 cut(s) 271, 702
BtsI GCAGTG 2 cut(s) 196, 1037
BtsIMutI CAGTG 2 cut(s) 196, 1037
Cac8I GCNNGC 2 cut(s) 498, 1028
CaiI CAGNNNCTG 1 cut(s) 260
CciNI GCGGCCGC 1 cut(s) 890
CfoI GCGC 2 cut(s) 98, 947
Cfr10I RCCGGY 1 cut(s) 373
Cfr13I GGNCC 4 cut(s) 316, 475, 592, 929
CseI GACGC 1 cut(s) 874
Csp6I GTAC 4 cut(s) 352, 377, 459, 511
CspAI ACCGGT 1 cut(s) 373
CspCI CAANNNNNGTGG 2 cut(s) 764, 799
CviAII CATG 2 cut(s) 514, 763
CviQI GTAC 4 cut(s) 352, 377, 459, 511
DdeI CTNAG 5 cut(s) 133, 261, 330, 448, 816
DpnI GATC 3 cut(s) 78, 918, 995
DpnII GATC 3 cut(s) 76, 916, 993
DriI GACNNNNNGTC 1 cut(s) 427
EaeI YGGCCR 1 cut(s) 890
EagI CGGCCG 1 cut(s) 890
Eam1104I CTCTTC 3 cut(s) 23, 470, 606
Eam1105I GACNNNNNGTC 1 cut(s) 427
EarI CTCTTC 3 cut(s) 23, 470, 606
EciI GGCGGA 1 cut(s) 599
EclXI CGGCCG 1 cut(s) 890
Eco31I GGTCTC 1 cut(s) 237
Eco47I GGWCC 4 cut(s) 316, 475, 592, 929
Eco52I CGGCCG 1 cut(s) 890
Eco57I CTGAAG 2 cut(s) 44, 71
EcoNI CCTNNNNNAGG 1 cut(s) 600
EcoO109I RGGNCCY 1 cut(s) 316
EcoRI GAATTC 1 cut(s) 767
EcoRII CCWGG 1 cut(s) 625
FaeI CATG 2 cut(s) 517, 766
FaiI YATR 7 cut(s) 111, 239, 515, 764, 1055, 1057, 1063
FalI AAGNNNNNCTT 1 cut(s) 38
FatI CATG 2 cut(s) 513, 762
FauI CCCGC 1 cut(s) 1035
FblI GTMKAC 1 cut(s) 273
Fnu4HI GCNGC 6 cut(s) 187, 203, 486, 887, 890, 893
FokI GGATG 2 cut(s) 278, 689
Fsp4HI GCNGC 6 cut(s) 187, 203, 486, 887, 890, 893
FspBI CTAG 1 cut(s) 380
GlaI GCGC 2 cut(s) 97, 946
GluI GCNGC 6 cut(s) 187, 203, 486, 887, 890, 893
GsuI CTGGAG 1 cut(s) 969
HaeIII GGCC 1 cut(s) 892
HapII CCGG 6 cut(s) 374, 436, 443, 456, 473, 590
HgaI GACGC 1 cut(s) 874
HhaI GCGC 2 cut(s) 98, 947
Hin1I GRCGYC 1 cut(s) 225
Hin1II CATG 2 cut(s) 517, 766
Hin6I GCGC 2 cut(s) 96, 945
HinP1I GCGC 2 cut(s) 96, 945
HincII GTYRAC 1 cut(s) 274
HindII GTYRAC 1 cut(s) 274
HindIII AAGCTT 1 cut(s) 818
HinfI GANTC 7 cut(s) 257, 335, 359, 383, 452, 638, 1013
HpaII CCGG 6 cut(s) 374, 436, 443, 456, 473, 590
HphI GGTGA 1 cut(s) 76
Hpy166II GTNNAC 3 cut(s) 274, 398, 623
Hpy188I TCNGA 8 cut(s) 103, 262, 364, 388, 415, 707, 773, 925
Hpy188III TCNNGA 1 cut(s) 872
Hpy8I GTNNAC 3 cut(s) 274, 398, 623
Hpy99I CGWCG 4 cut(s) 230, 278, 281, 692
HpyAV CCTTC 4 cut(s) 131, 301, 674, 694
HpyCH4III ACNGT 1 cut(s) 933
HpyCH4IV ACGT 1 cut(s) 225
HpyCH4V TGCA 5 cut(s) 186, 696, 760, 801, 902
HpyF10VI GCNNNNNNNGC 4 cut(s) 172, 874, 883, 892
HpyF3I CTNAG 5 cut(s) 133, 261, 330, 448, 816
HpySE526I ACGT 1 cut(s) 225
Hsp92I GRCGYC 1 cut(s) 225
Hsp92II CATG 2 cut(s) 517, 766
HspAI GCGC 2 cut(s) 96, 945
KpnI GGTACC 1 cut(s) 462
Kzo9I GATC 3 cut(s) 76, 916, 993
LmnI GCTCC 4 cut(s) 586, 630, 848, 900
Lsp1109I GCAGC 3 cut(s) 198, 214, 873
LweI GCATC 3 cut(s) 107, 711, 747
MaeI CTAG 1 cut(s) 380
MaeII ACGT 1 cut(s) 225
MaeIII GTNAC 2 cut(s) 986, 1034
MalI GATC 3 cut(s) 78, 918, 995
MbiI CCGCTC 1 cut(s) 895
MboI GATC 3 cut(s) 76, 916, 993
MboII GAAGA 7 cut(s) 40, 50, 77, 167, 457, 623, 799
MhlI GDGCHC 1 cut(s) 1028
MluCI AATT 5 cut(s) 143, 341, 518, 645, 767
MlyI GAGTC 4 cut(s) 344, 392, 647, 1022
MmeI TCCRAC 3 cut(s) 366, 696, 894
MroXI GAANNNNTTC 1 cut(s) 120
MspI CCGG 6 cut(s) 374, 436, 443, 456, 473, 590
MspR9I CCNGG 2 cut(s) 473, 627
MvaI CCWGG 1 cut(s) 627
MwoI GCNNNNNNNGC 4 cut(s) 172, 874, 883, 892
NciI CCSGG 1 cut(s) 473
NdeII GATC 3 cut(s) 76, 916, 993
NlaIII CATG 2 cut(s) 517, 766
NlaIV GGNNCC 5 cut(s) 318, 460, 588, 594, 810
NmuCI GTSAC 1 cut(s) 986
NotI GCGGCCGC 1 cut(s) 890
NspV TTCGAA 1 cut(s) 609
PcsI WCGNNNNNNNCGW 1 cut(s) 673
PdmI GAANNNNTTC 1 cut(s) 120
PfeI GAWTC 3 cut(s) 257, 359, 452
PflFI GACNNNGTC 1 cut(s) 933
PinAI ACCGGT 1 cut(s) 373
PkrI GCNGC 6 cut(s) 188, 204, 487, 888, 891, 894
PleI GAGTC 4 cut(s) 343, 391, 646, 1021
PpsI GAGTC 4 cut(s) 343, 391, 646, 1021
PpuMI RGGWCCY 1 cut(s) 316
Psp5II RGGWCCY 1 cut(s) 316
Psp6I CCWGG 1 cut(s) 625
PspGI CCWGG 1 cut(s) 625
PspN4I GGNNCC 5 cut(s) 318, 460, 588, 594, 810
PspPI GGNCC 4 cut(s) 316, 475, 592, 929
PspPPI RGGWCCY 1 cut(s) 316
PstI CTGCAG 1 cut(s) 188
PstNI CAGNNNCTG 1 cut(s) 260
PsyI GACNNNGTC 1 cut(s) 933
RsaI GTAC 4 cut(s) 353, 378, 460, 512
RsaNI GTAC 4 cut(s) 352, 377, 459, 511
SalI GTCGAC 1 cut(s) 272
SatI GCNGC 6 cut(s) 187, 203, 486, 887, 890, 893
Sau3AI GATC 3 cut(s) 76, 916, 993
Sau96I GGNCC 4 cut(s) 316, 475, 592, 929
SchI GAGTC 4 cut(s) 344, 392, 647, 1022
ScrFI CCNGG 2 cut(s) 473, 627
SduI GDGCHC 1 cut(s) 1028
SfaNI GCATC 3 cut(s) 107, 711, 747
SfcI CTRYAG 1 cut(s) 184
SfuI TTCGAA 1 cut(s) 609
SinI GGWCC 4 cut(s) 316, 475, 592, 929
Sse9I AATT 5 cut(s) 143, 341, 518, 645, 767
SsiI CCGC 5 cut(s) 486, 584, 889, 893, 1028
SspI AATATT 1 cut(s) 562
SspMI CTAG 1 cut(s) 380
StyD4I CCNGG 2 cut(s) 471, 625
TaaI ACNGT 1 cut(s) 933
TaiI ACGT 1 cut(s) 228
TaqI TCGA 9 cut(s) 79, 228, 273, 468, 609, 667, 687, 741, 755
TasI AATT 5 cut(s) 143, 341, 518, 645, 767
TatI WGTACW 1 cut(s) 510
TauI GCSGC 3 cut(s) 488, 892, 895
TfiI GAWTC 3 cut(s) 257, 359, 452
TscAI CASTG 2 cut(s) 196, 1037
TseFI GTSAC 1 cut(s) 986
TseI GCWGC 3 cut(s) 186, 202, 886
Tsp45I GTSAC 1 cut(s) 986
TspDTI ATGAA 6 cut(s) 17, 26, 282, 530, 588, 814
TspGWI ACGGA 2 cut(s) 383, 996
TspRI CASTG 2 cut(s) 196, 1037
Tth111I GACNNNGTC 1 cut(s) 933
VpaK11BI GGWCC 4 cut(s) 316, 475, 592, 929
XagI CCTNNNNNAGG 1 cut(s) 600
XapI RAATTY 2 cut(s) 143, 767
XmiI GTMKAC 1 cut(s) 273
XmnI GAANNNNTTC 1 cut(s) 120
XspI CTAG 1 cut(s) 380
ZraI GACGTC 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.