Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0009713

Physical Location & Seq

Genomic Coordinates Reverse (-)

28296363 .. 28302354

Gene Structure 5992 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG135200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2433 bp

ATGCAACCTAGGAGGCACGAGAGTTTCAATAGACAGCAGCCTCCGGCTTCTAAATTACGACCCACCTACCGATTCGAATCCGGTGCCAACAACCACCCTTATAGTAGTGGTAGTAGTAGGAGGAGACCTGAGGAGGTACATCGGAATATTAGGAGGAGTTTGAGCCCGCAACAAGATCATCTGGGTGTCAGTCAAAGGAATGTTGCTTGTATTCAGAGGGAGTATGGCTGGCATTTGGGCCGCGGTAGGACTGATGGCGTCCGCCGCAGGTCAACATCCGGGTCACCCCTACTGCCTTTTGGTGAAATGCGAAAAATGTCACAATTTGAGGAGGAGGAGGAGGAGGAGGATGGGGATTTGCGGAGGAGTTATTCACCACCACCACAACCACCGGTACCTGTTCCGGCATCTGTTCCTTTGGAGTTAAAACACAGACGTGATAGCGTTGAGGCTGGAAATTATAGTGTCAATGATGATTTGAATAGTAGGAGAGGTTATGGCTCCGAGCATAATGATTTTGGAATCAGTAAAGAAGATTTGAATGAAAGCAGATTGACAGCTGGTGGTAAACATGGGACATTGGGTCAAAAACCAACCCATATGGAAGATAGTGCTGTAAGAGGATCCAAAACCATGTTTATCAAAGGTGACACCGTGCATGGAGCATATCATTCTTCTCCAAGCCTTGGTACTGTTATAACTCAAGGAGCAAGGGGTGGCCACCTACCATCATCAACGCGCAGCATGAGCATACGTCATTCTGACCAAGAAAGGCTTCAGTATGCGGACCCTATATCTTTGGATAGATTACCAGTGACAGAAGCCTACAAAGAAGGAAATAAACCCGTTTTTCCTACAAGAGATGGCTTTTATTCCATGATGTCTGGATCTCATTCCAAGAATTATTTTGCTAGCTCCTCAACAGGGTTGAGGAATGAATTCCAAGATTCCTATCAGCATGAGCAGCATATGCCTTCTTTGGAAGAATTTTCAAGAAGTAGTAGAAAACTTAAAGATTCTGTGAGCATTAATGCATATAGGGAAAGGCCGGTAGTAGAGTTTTCTCGAGACCCTGATTCTGGGCAGAAGAATCTGACATTTTACCAGAGAGATAGTCCTACTAGAGTTGAGTATGATGATGATTATTATTTCTACCCAAACTCAAGAGGAATGATATTTGACGATCATGAGCTTCCATCTGATCACTTACACAAAGTGATGCATCCACGAGCACCACTTGACTATGACCATTCTCGGATGGGTTATGATCATAGAACTGTGTCAAGATCTAGTACCATGCTCCCTGTTGTGGAAAGAATTGATAATACTGAGGATTATTCTGGAAATTCAAGGAAGCGCATTATGCTGAATAATTCTACTTTAGAAAGGCATACACTATCAGACTACCCTGATATAAGCAGAATATCAAGTGCATCAAAGCAGAGTGGAGAATATATGAGTTCTGGACGCATGCATGACAAGTTTGGAAGGAGAATTTCACAAGATTATGAAACATCGCATTTGGGTGCAGCGCAAGTTTGTCAAATCTCACATCTGAAAGAAGATTATGGTTATGAAAGAGATGGAAACCTGAAGTTTCAGGACAGACAGTGTCCTGTGTCTAAATACGATCCAGAAATGCATAGAAATACTATTAAAATGCAGAGTATGAGAGACAAGCTTGGGGTATATGAACCATCAGATAGGGTGGTGAAAAGAAAATATGTTAATGAAGAGCATGGAAGTATCCAGAATCCTAGAGAAATTATGTCAGGTAAATGGAATACCTCTAGAGAGTTTCAAGATTTGTATGATAGTGGTGAAGAGTGGAATGGTGAAGATGTAGGATCTATGTATACATCTAGATCAGCAAGATTGGGCCATAATGAACACTATAAGGCCCAGAGGAAATATGCTGGAATAGACCAGTATGATGAATTTGCATCTGATGATCGGCTGCCGTCTCAAGACTCTTTGGCAGATGCACAAAGGCACTCAGTTAGATATTATAAACATGGTGATCGGTATGCCAAGGGTCACCAAAACTATGGTTCATTAAGTAGGCATAGGTCACAGCAAGTTGACATAAAAAGTGGCTTTCACAAACAGCACAAAGTTTGGAAGAGAAATGATAATTATCTAGAGGATGTCCACAGAGGTGATGATAATGATGCTGATACATCAGAAAATGGGTTGAGTTCTGCAGCTCCTGAGCCATCAGAGGATTCTGAGGAGTTTATGCAATTGGTACAAGAAGCCTTCCTAACATACTCTAAACAATTAAATATGAACCCTGGTGTTCGGAGAAGATACATGGAACAAGGAAAGGCTGGGACTTTATTCTGCATCGTATGTGGCCGAAGGTCTGTTTTCTTTTGTCATGTTCTTTCTAAGTGGGGTTCCTGTTTTATCTTTTCGTTCCGGAGTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

810

Amino Acids

93.3

Weight (kDa)

7.75

Isoelectric Point (pI)

71.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009713)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g05850 FvH4_7g05850 FvH4_7g05850
malus_domestica	MD02G1254600.v1.1 MD07G1067200.v1.1
prunus_persica	Prupe.2G084400_v2.0.a1 Prupe.2G084400_v2.0.a1
pyrus_communis	pycom02g21450 pycom07g05140
rosa_chinensis	RchiOBHm_Chr1g0332961
rosa_laevigata	RLG00000029630
rosa_multiflora	Rmu_co8522447.1_g000002 Rmu_sc0000117.1_g000033 Rmu_sc0000813.1_g000010
rosa_roxburghii	Rroxscaffold_4G00317840
rosa_rugosa	Rorug01G0106200
rosa_samantha	Rh1AG129400 Rh1BG098600 Rh1CG123300 Rh1DG135200
rosa_wichuraiana	Rw0G014350 Rw1G010360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	698, 2010
Acc36I	ACCTGC	1 cut(s)	258
Acc65I	GGTACC	1 cut(s)	394
AccB1I	GGYRCC	2 cut(s)	83, 394
AccB7I	CCANNNNNTGG	1 cut(s)	686
AccI	GTMKAC	1 cut(s)	1856
AccII	CGCG	2 cut(s)	243, 739
AccIII	TCCGGA	1 cut(s)	2421
AciI	CCGC	7 cut(s)	167, 241, 243, 262, 265, 361, 785
AclWI	GGATC	5 cut(s)	618, 631, 895, 1625, 1855
AcoI	YGGCCR	2 cut(s)	718, 2356
AcsI	RAATTY	5 cut(s)	938, 986, 1345, 1494, 1937
AcuI	CTGAAG	2 cut(s)	761, 1613
AcyI	GRCGYC	1 cut(s)	258
AdeI	CACNNNGTG	1 cut(s)	1216
AfaI	GTAC	5 cut(s)	138, 396, 691, 1294, 2250
AfiI	CCNNNNNNNGG	4 cut(s)	686, 924, 1079, 1309
AgeI	ACCGGT	1 cut(s)	391
AgsI	TTSAA	6 cut(s)	28, 481, 541, 993, 1350, 1802
AhdI	GACNNNNNGTC	1 cut(s)	582
AjiI	CACGTC	1 cut(s)	437
AjnI	CCWGG	1 cut(s)	2293
AjuI	GAANNNNNNNTTGG	2 cut(s)	759, 791
AleI	CACNNNNGTG	2 cut(s)	435, 2157
AluBI	AGCT	5 cut(s)	560, 915, 1192, 1681, 2207
AluI	AGCT	5 cut(s)	560, 915, 1192, 1681, 2207
Alw21I	GWGCWC	1 cut(s)	1234
Alw26I	GTCTC	4 cut(s)	118, 1062, 1668, 1968
AlwI	GGATC	5 cut(s)	618, 631, 895, 1625, 1855
AlwNI	CAGNNNCTG	1 cut(s)	2210
Ama87I	CYCGRG	1 cut(s)	1065
Aor13HI	TCCGGA	1 cut(s)	2421
AoxI	GGCC	6 cut(s)	238, 718, 1046, 1879, 1899, 2356
ApeKI	GCWGC	6 cut(s)	37, 741, 964, 1529, 1957, 2204
ApoI	RAATTY	5 cut(s)	938, 986, 1345, 1494, 1937
AseI	ATTAAT	1 cut(s)	1029
AsiGI	ACCGGT	1 cut(s)	391
Asp700I	GAANNNNTTC	2 cut(s)	774, 938
Asp718I	GGTACC	1 cut(s)	394
AspA2I	CCTAGG	1 cut(s)	8
AspLEI	GCGC	3 cut(s)	741, 1359, 1534
AspS9I	GGNCC	4 cut(s)	238, 787, 1879, 1900
AsuC2I	CCSGG	1 cut(s)	280
AsuII	TTCGAA	1 cut(s)	75
AsuNHI	GCTAGC	1 cut(s)	911
AvaI	CYCGRG	1 cut(s)	1065
AvaII	GGWCC	1 cut(s)	787
AvrII	CCTAGG	1 cut(s)	8
AxyI	CCTNAGG	1 cut(s)	129
BalI	TGGCCA	1 cut(s)	720
BamHI	GGATCC	1 cut(s)	623
BanI	GGYRCC	2 cut(s)	83, 394
BanII	GRGCYC	1 cut(s)	167
BauI	CACGAG	2 cut(s)	17, 1227
Bbv12I	GWGCWC	1 cut(s)	1234
BbvI	GCAGC	6 cut(s)	49, 753, 976, 1541, 1944, 2216
BccI	CCATC	9 cut(s)	248, 344, 736, 857, 1204, 1252, 1577, 1705, 2224
BceAI	ACGGC	1 cut(s)	1945
BcgI	CGANNNNNNTGC	2 cut(s)	65, 99
BciT130I	CCWGG	1 cut(s)	2295
BciVI	GTATCC	1 cut(s)	1757
BclI	TGATCA	2 cut(s)	1201, 1267
BcnI	CCSGG	1 cut(s)	280
BcoDI	GTCTC	4 cut(s)	118, 1062, 1668, 1968
BfaI	CTAG	8 cut(s)	9, 912, 1122, 1290, 1758, 1791, 1863, 2141
BfmI	CTRYAG	1 cut(s)	2202
BfuAI	ACCTGC	1 cut(s)	258
BfuI	GTATCC	1 cut(s)	1757
BglII	AGATCT	1 cut(s)	1286
BisI	GCNGC	8 cut(s)	38, 241, 265, 742, 965, 1530, 1958, 2205
BlnI	CCTAGG	1 cut(s)	8
BlsI	GCNGC	8 cut(s)	39, 242, 266, 743, 966, 1531, 1959, 2206
Bme1390I	CCNGG	2 cut(s)	280, 2295
Bme18I	GGWCC	1 cut(s)	787
BmeRI	GACNNNNNGTC	1 cut(s)	582
BmeT110I	CYCGRG	1 cut(s)	1065
BmgBI	CACGTC	1 cut(s)	437
BmgT120I	GGNCC	4 cut(s)	238, 787, 1879, 1900
BmiI	GGNNCC	6 cut(s)	85, 396, 502, 625, 789, 2401
BmrFI	CCNGG	2 cut(s)	280, 2295
BmsI	GCATC	8 cut(s)	416, 1209, 1231, 1442, 1952, 1972, 2161, 2355
BmtI	GCTAGC	1 cut(s)	915
Bpu10I	CCTNAGC	1 cut(s)	2211
Bpu14I	TTCGAA	1 cut(s)	75
BpuEI	CTTGAG	3 cut(s)	687, 1147, 1950
BpuMI	CCSGG	1 cut(s)	280
BsaBI	GATNNNNATC	3 cut(s)	76, 951, 2136
BsaHI	GRCGYC	1 cut(s)	258
BsaI	GGTCTC	2 cut(s)	118, 1062
BsaJI	CCNNGG	5 cut(s)	8, 241, 685, 2031, 2293
BsaWI	WCCGGW	3 cut(s)	80, 391, 2421
Bsc4I	CCNNNNNNNGG	4 cut(s)	686, 924, 1079, 1309
Bse118I	RCCGGY	2 cut(s)	391, 1048
Bse1I	ACTGG	2 cut(s)	812, 1927
Bse21I	CCTNAGG	1 cut(s)	129
Bse8I	GATNNNNATC	3 cut(s)	76, 951, 2136
BseAI	TCCGGA	1 cut(s)	2421
BseBI	CCWGG	1 cut(s)	2295
BseDI	CCNNGG	5 cut(s)	8, 241, 685, 2031, 2293
BseGI	GGATG	5 cut(s)	275, 355, 1222, 1263, 2152
BseJI	GATNNNNATC	3 cut(s)	76, 951, 2136
BseLI	CCNNNNNNNGG	4 cut(s)	686, 924, 1079, 1309
BseMII	CTCAG	5 cut(s)	120, 1320, 2010, 2202, 2220
BseNI	ACTGG	2 cut(s)	812, 1927
BseXI	GCAGC	6 cut(s)	49, 753, 976, 1541, 1944, 2216
BseYI	CCCAGC	1 cut(s)	2330
BsgI	GTGCAG	1 cut(s)	1548
Bsh1236I	CGCG	2 cut(s)	243, 739
BshFI	GGCC	6 cut(s)	240, 720, 1048, 1881, 1901, 2358
BshNI	GGYRCC	2 cut(s)	83, 394
BshTI	ACCGGT	1 cut(s)	391
BsiHKAI	GWGCWC	1 cut(s)	1234
BsiHKCI	CYCGRG	1 cut(s)	1065
BsiSI	CCGG	7 cut(s)	44, 81, 279, 392, 404, 1049, 2422
BslFI	GGGAC	2 cut(s)	589, 2347
BslI	CCNNNNNNNGG	4 cut(s)	686, 924, 1079, 1309
BsmAI	GTCTC	4 cut(s)	118, 1062, 1668, 1968
BsmBI	CGTCTC	1 cut(s)	1968
BsmFI	GGGAC	2 cut(s)	589, 2347
BsnI	GGCC	6 cut(s)	240, 720, 1048, 1881, 1901, 2358
Bso31I	GGTCTC	2 cut(s)	118, 1062
BsoBI	CYCGRG	1 cut(s)	1065
Bsp119I	TTCGAA	1 cut(s)	75
Bsp1286I	GDGCHC	2 cut(s)	167, 1234
Bsp13I	TCCGGA	1 cut(s)	2421
BspACI	CCGC	7 cut(s)	167, 241, 243, 262, 265, 361, 785
BspANI	GGCC	6 cut(s)	240, 720, 1048, 1881, 1901, 2358
BspCNI	CTCAG	5 cut(s)	121, 1321, 2009, 2203, 2221
BspEI	TCCGGA	1 cut(s)	2421
BspFNI	CGCG	2 cut(s)	243, 739
BspHI	TCATGA	1 cut(s)	1186
BspLI	GGNNCC	6 cut(s)	85, 396, 502, 625, 789, 2401
BspMAI	CTGCAG	1 cut(s)	2206
BspMI	ACCTGC	1 cut(s)	258
BspOI	GCTAGC	1 cut(s)	915
BspPI	GGATC	5 cut(s)	618, 631, 895, 1625, 1855
BspQI	GCTCTTC	1 cut(s)	1728
BspT104I	TTCGAA	1 cut(s)	75
BspT107I	GGYRCC	2 cut(s)	83, 394
BspTNI	GGTCTC	2 cut(s)	118, 1062
BsrFI	RCCGGY	2 cut(s)	391, 1048
BsrI	ACTGG	2 cut(s)	812, 1927
BssAI	RCCGGY	2 cut(s)	391, 1048
BssECI	CCNNGG	5 cut(s)	8, 241, 685, 2031, 2293
BssNAI	GTATAC	1 cut(s)	1857
BssNI	GRCGYC	1 cut(s)	258
BssSI	CACGAG	2 cut(s)	17, 1227
BssT1I	CCWWGG	3 cut(s)	8, 685, 2031
Bst1107I	GTATAC	1 cut(s)	1857
Bst2BI	CACGAG	2 cut(s)	17, 1227
Bst2UI	CCWGG	1 cut(s)	2295
Bst4CI	ACNGT	4 cut(s)	655, 694, 1279, 1611
Bst6I	CTCTTC	3 cut(s)	1728, 1818, 2117
BstACI	GRCGYC	1 cut(s)	258
BstAPI	GCANNNNNTGC	1 cut(s)	970
BstBI	TTCGAA	1 cut(s)	75
BstC8I	GCNNGC	4 cut(s)	167, 230, 913, 1472
BstDEI	CTNAG	6 cut(s)	129, 1329, 1996, 2211, 2229, 2391
BstDSI	CCRYGG	1 cut(s)	241
BstEII	GGTNACC	2 cut(s)	282, 2036
BstF5I	GGATG	5 cut(s)	275, 355, 1222, 1263, 2152
BstFNI	CGCG	2 cut(s)	243, 739
BstHHI	GCGC	3 cut(s)	741, 1359, 1534
BstMAI	GTCTC	4 cut(s)	118, 1062, 1668, 1968
BstMWI	GCNNNNNNNGC	5 cut(s)	264, 747, 964, 970, 1363
BstNI	CCWGG	1 cut(s)	2295
BstNSI	RCATGY	1 cut(s)	1474
BstPI	GGTNACC	2 cut(s)	282, 2036
BstSCI	CCNGG	2 cut(s)	278, 2293
BstSFI	CTRYAG	1 cut(s)	2202
BstUI	CGCG	2 cut(s)	243, 739
BstV1I	GCAGC	6 cut(s)	49, 753, 976, 1541, 1944, 2216
BstX2I	RGATCY	4 cut(s)	623, 887, 1286, 1847
BstXI	CCANNNNNNTGG	1 cut(s)	2048
BstYI	RGATCY	4 cut(s)	623, 887, 1286, 1847
BstZ17I	GTATAC	1 cut(s)	1857
Bsu36I	CCTNAGG	1 cut(s)	129
BsuI	GTATCC	1 cut(s)	1757
BsuRI	GGCC	6 cut(s)	240, 720, 1048, 1881, 1901, 2358
BtgI	CCRYGG	1 cut(s)	241
BtgZI	GCGATG	1 cut(s)	1500
BtrI	CACGTC	1 cut(s)	437
BtsCI	GGATG	5 cut(s)	275, 355, 1222, 1263, 2152
BtsIMutI	CAGTG	2 cut(s)	819, 1616
BveI	ACCTGC	1 cut(s)	258
Cac8I	GCNNGC	4 cut(s)	167, 230, 913, 1472
CaiI	CAGNNNCTG	1 cut(s)	2210
CciI	TCATGA	1 cut(s)	1186
CfoI	GCGC	3 cut(s)	741, 1359, 1534
Cfr10I	RCCGGY	2 cut(s)	391, 1048
Cfr13I	GGNCC	4 cut(s)	238, 787, 1879, 1900
Cfr42I	CCGCGG	1 cut(s)	244
CseI	GACGC	2 cut(s)	247, 1476
Csp6I	GTAC	5 cut(s)	137, 395, 690, 1293, 2249
CspAI	ACCGGT	1 cut(s)	391
CviQI	GTAC	5 cut(s)	137, 395, 690, 1293, 2249
DdeI	CTNAG	6 cut(s)	129, 1329, 1996, 2211, 2229, 2391
DraIII	CACNNNGTG	1 cut(s)	1216
DriI	GACNNNNNGTC	1 cut(s)	582
EaeI	YGGCCR	2 cut(s)	718, 2356
Eam1104I	CTCTTC	3 cut(s)	1728, 1818, 2117
Eam1105I	GACNNNNNGTC	1 cut(s)	582
EarI	CTCTTC	3 cut(s)	1728, 1818, 2117
EciI	GGCGGA	1 cut(s)	251
Eco130I	CCWWGG	3 cut(s)	8, 685, 2031
Eco24I	GRGCYC	1 cut(s)	167
Eco31I	GGTCTC	2 cut(s)	118, 1062
Eco47I	GGWCC	1 cut(s)	787
Eco57I	CTGAAG	2 cut(s)	761, 1613
Eco81I	CCTNAGG	1 cut(s)	129
Eco88I	CYCGRG	1 cut(s)	1065
Eco91I	GGTNACC	2 cut(s)	282, 2036
EcoO65I	GGTNACC	2 cut(s)	282, 2036
EcoRI	GAATTC	1 cut(s)	938
EcoRII	CCWGG	1 cut(s)	2293
EcoT14I	CCWWGG	3 cut(s)	8, 685, 2031
EcoT22I	ATGCAT	4 cut(s)	1036, 1224, 1476, 1644
EcoT38I	GRGCYC	1 cut(s)	167
ErhI	CCWWGG	3 cut(s)	8, 685, 2031
Esp3I	CGTCTC	1 cut(s)	1968
FalI	AAGNNNNNCTT	2 cut(s)	759, 791
FaqI	GGGAC	2 cut(s)	589, 2347
FauI	CCCGC	1 cut(s)	174
FauNDI	CATATG	2 cut(s)	600, 969
FbaI	TGATCA	2 cut(s)	1201, 1267
FblI	GTMKAC	1 cut(s)	1856
Fnu4HI	GCNGC	8 cut(s)	38, 241, 265, 742, 965, 1530, 1958, 2205
FokI	GGATG	5 cut(s)	262, 362, 1209, 1270, 2159
FriOI	GRGCYC	1 cut(s)	167
Fsp4HI	GCNGC	8 cut(s)	38, 241, 265, 742, 965, 1530, 1958, 2205
FspBI	CTAG	8 cut(s)	9, 912, 1122, 1290, 1758, 1791, 1863, 2141
GlaI	GCGC	3 cut(s)	740, 1358, 1533
GluI	GCNGC	8 cut(s)	38, 241, 265, 742, 965, 1530, 1958, 2205
GsaI	CCCAGC	1 cut(s)	2334
HaeIII	GGCC	6 cut(s)	240, 720, 1048, 1881, 1901, 2358
HapII	CCGG	7 cut(s)	44, 81, 279, 392, 404, 1049, 2422
HgaI	GACGC	2 cut(s)	247, 1476
HhaI	GCGC	3 cut(s)	741, 1359, 1534
Hin1I	GRCGYC	1 cut(s)	258
Hin6I	GCGC	3 cut(s)	739, 1357, 1532
HinP1I	GCGC	3 cut(s)	739, 1357, 1532
HincII	GTYRAC	2 cut(s)	273, 2083
HindII	GTYRAC	2 cut(s)	273, 2083
HindIII	AAGCTT	1 cut(s)	1679
HpaII	CCGG	7 cut(s)	44, 81, 279, 392, 404, 1049, 2422
Hpy166II	GTNNAC	5 cut(s)	273, 569, 1857, 2083, 2152
Hpy8I	GTNNAC	5 cut(s)	273, 569, 1857, 2083, 2152
HpyAV	CCTTC	5 cut(s)	827, 984, 1482, 2269, 2355
HpyCH4III	ACNGT	4 cut(s)	655, 694, 1279, 1611
HpyCH4IV	ACGT	2 cut(s)	436, 754
HpyF10VI	GCNNNNNNNGC	5 cut(s)	264, 747, 964, 970, 1363
HpyF3I	CTNAG	6 cut(s)	129, 1329, 1996, 2211, 2229, 2391
HpySE526I	ACGT	2 cut(s)	436, 754
Hsp92I	GRCGYC	1 cut(s)	258
HspAI	GCGC	3 cut(s)	739, 1357, 1532
Kpn2I	TCCGGA	1 cut(s)	2421
KpnI	GGTACC	1 cut(s)	398
Ksp22I	TGATCA	2 cut(s)	1201, 1267
KspI	CCGCGG	1 cut(s)	244
LguI	GCTCTTC	1 cut(s)	1728
LmnI	GCTCC	6 cut(s)	506, 662, 707, 920, 1305, 2212
Lsp1109I	GCAGC	6 cut(s)	49, 753, 976, 1541, 1944, 2216
LweI	GCATC	8 cut(s)	416, 1209, 1231, 1442, 1952, 1972, 2161, 2355
MaeI	CTAG	8 cut(s)	9, 912, 1122, 1290, 1758, 1791, 1863, 2141
MaeII	ACGT	2 cut(s)	436, 754
MaeIII	GTNAC	6 cut(s)	282, 318, 647, 814, 2036, 2070
MfeI	CAATTG	1 cut(s)	2243
MflI	RGATCY	4 cut(s)	623, 887, 1286, 1847
MhlI	GDGCHC	2 cut(s)	167, 1234
MlsI	TGGCCA	1 cut(s)	720
MluNI	TGGCCA	1 cut(s)	720
MlyI	GAGTC	1 cut(s)	1964
Mox20I	TGGCCA	1 cut(s)	720
Mph1103I	ATGCAT	4 cut(s)	1036, 1224, 1476, 1644
MroI	TCCGGA	1 cut(s)	2421
MroXI	GAANNNNTTC	2 cut(s)	774, 938
MscI	TGGCCA	1 cut(s)	720
MseI	TTAA	8 cut(s)	425, 1011, 1029, 1656, 1728, 2057, 2282, 2431
MslI	CAYNNNNRTG	4 cut(s)	183, 435, 1524, 2157
Msp20I	TGGCCA	1 cut(s)	720
MspA1I	CMGCKG	2 cut(s)	243, 560
MspI	CCGG	7 cut(s)	44, 81, 279, 392, 404, 1049, 2422
MspR9I	CCNGG	2 cut(s)	280, 2295
MunI	CAATTG	1 cut(s)	2243
MvaI	CCWGG	1 cut(s)	2295
MvnI	CGCG	2 cut(s)	243, 739
MwoI	GCNNNNNNNGC	5 cut(s)	264, 747, 964, 970, 1363
NciI	CCSGG	1 cut(s)	280
NdeI	CATATG	2 cut(s)	600, 969
NheI	GCTAGC	1 cut(s)	911
NlaIV	GGNNCC	6 cut(s)	85, 396, 502, 625, 789, 2401
NmuCI	GTSAC	6 cut(s)	282, 318, 647, 814, 2036, 2070
NsiI	ATGCAT	4 cut(s)	1036, 1224, 1476, 1644
NspI	RCATGY	1 cut(s)	1474
NspV	TTCGAA	1 cut(s)	75
OliI	CACNNNNGTG	2 cut(s)	435, 2157
PaeI	GCATGC	1 cut(s)	1474
PaeR7I	CTCGAG	1 cut(s)	1065
PagI	TCATGA	1 cut(s)	1186
PciSI	GCTCTTC	1 cut(s)	1728
PdmI	GAANNNNTTC	2 cut(s)	774, 938
PfeI	GAWTC	9 cut(s)	72, 77, 522, 947, 1016, 1076, 1090, 1753, 2225
PflFI	GACNNNGTC	1 cut(s)	1611
PflMI	CCANNNNNTGG	1 cut(s)	686
PinAI	ACCGGT	1 cut(s)	391
PkrI	GCNGC	8 cut(s)	39, 242, 266, 743, 966, 1531, 1959, 2206
PleI	GAGTC	1 cut(s)	1964
PpsI	GAGTC	1 cut(s)	1964
PshBI	ATTAAT	1 cut(s)	1029
PsiI	TTATAA	2 cut(s)	698, 2010
Psp6I	CCWGG	1 cut(s)	2293
PspEI	GGTNACC	2 cut(s)	282, 2036
PspFI	CCCAGC	1 cut(s)	2330
PspGI	CCWGG	1 cut(s)	2293
PspN4I	GGNNCC	6 cut(s)	85, 396, 502, 625, 789, 2401
PspPI	GGNCC	4 cut(s)	238, 787, 1879, 1900
PstI	CTGCAG	1 cut(s)	2206
PstNI	CAGNNNCTG	1 cut(s)	2210
PsuI	RGATCY	4 cut(s)	623, 887, 1286, 1847
PsyI	GACNNNGTC	1 cut(s)	1611
PvuII	CAGCTG	1 cut(s)	560
RsaI	GTAC	5 cut(s)	138, 396, 691, 1294, 2250
RsaNI	GTAC	5 cut(s)	137, 395, 690, 1293, 2249
RseI	CAYNNNNRTG	4 cut(s)	183, 435, 1524, 2157
SacII	CCGCGG	1 cut(s)	244
SapI	GCTCTTC	1 cut(s)	1728
SaqAI	TTAA	8 cut(s)	425, 1011, 1029, 1656, 1728, 2057, 2282, 2431
SatI	GCNGC	8 cut(s)	38, 241, 265, 742, 965, 1530, 1958, 2205
Sau96I	GGNCC	4 cut(s)	238, 787, 1879, 1900
SchI	GAGTC	1 cut(s)	1964
ScrFI	CCNGG	2 cut(s)	280, 2295
SduI	GDGCHC	2 cut(s)	167, 1234
SfaNI	GCATC	8 cut(s)	416, 1209, 1231, 1442, 1952, 1972, 2161, 2355
SfcI	CTRYAG	1 cut(s)	2202
Sfr274I	CTCGAG	1 cut(s)	1065
Sfr303I	CCGCGG	1 cut(s)	244
SfuI	TTCGAA	1 cut(s)	75
SgrBI	CCGCGG	1 cut(s)	244
SinI	GGWCC	1 cut(s)	787
SlaI	CTCGAG	1 cut(s)	1065
SmiMI	CAYNNNNRTG	4 cut(s)	183, 435, 1524, 2157
SmlI	CTYRAG	4 cut(s)	702, 1065, 1162, 1965
SmoI	CTYRAG	4 cut(s)	702, 1065, 1162, 1965
SphI	GCATGC	1 cut(s)	1474
SsiI	CCGC	7 cut(s)	167, 241, 243, 262, 265, 361, 785
SspI	AATATT	1 cut(s)	148
SspMI	CTAG	8 cut(s)	9, 912, 1122, 1290, 1758, 1791, 1863, 2141
StyD4I	CCNGG	2 cut(s)	278, 2293
StyI	CCWWGG	3 cut(s)	8, 685, 2031
TaaI	ACNGT	4 cut(s)	655, 694, 1279, 1611
TaiI	ACGT	2 cut(s)	439, 757
TaqI	TCGA	2 cut(s)	75, 1066
TauI	GCSGC	2 cut(s)	243, 267
TfiI	GAWTC	9 cut(s)	72, 77, 522, 947, 1016, 1076, 1090, 1753, 2225
Tru1I	TTAA	8 cut(s)	425, 1011, 1029, 1656, 1728, 2057, 2282, 2431
Tru9I	TTAA	8 cut(s)	425, 1011, 1029, 1656, 1728, 2057, 2282, 2431
TscAI	CASTG	2 cut(s)	819, 1616
TseFI	GTSAC	6 cut(s)	282, 318, 647, 814, 2036, 2070
TseI	GCWGC	6 cut(s)	37, 741, 964, 1529, 1957, 2204
Tsp45I	GTSAC	6 cut(s)	282, 318, 647, 814, 2036, 2070
TspRI	CASTG	2 cut(s)	819, 1616
Tth111I	GACNNNGTC	1 cut(s)	1611
Van91I	CCANNNNNTGG	1 cut(s)	686
VpaK11BI	GGWCC	1 cut(s)	787
VspI	ATTAAT	1 cut(s)	1029
XapI	RAATTY	5 cut(s)	938, 986, 1345, 1494, 1937
XbaI	TCTAGA	3 cut(s)	1790, 1862, 2140
XceI	RCATGY	1 cut(s)	1474
XhoI	CTCGAG	1 cut(s)	1065
XmaJI	CCTAGG	1 cut(s)	8
XmiI	GTMKAC	1 cut(s)	1856
XmnI	GAANNNNTTC	2 cut(s)	774, 938
XspI	CTAG	8 cut(s)	9, 912, 1122, 1290, 1758, 1791, 1863, 2141
Zsp2I	ATGCAT	4 cut(s)	1036, 1224, 1476, 1644

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.