Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0009713

Physical Location & Seq

Genomic Coordinates Forward (+)

23124823 .. 23130842

Gene Structure 6020 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G010360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2454 bp

ATGCAACCTAGGAGGCACGAGAGTTTCAATAGACAGCAGCCTCCGGCTTCTAAATTACGTCCCACCTACCGATTCGAATCCGGTGCCAACAACCACCCTTATAGTAGTGGTAGTAGGAGGAGACCTGAGCAGGTACATCGGACTATTAGGAGGAGTTTGAGCCCGCAACAAGATCATCTGGGTGTCAGTCAAAGGAATGTTGCTTCTATTCAGAGGGAGTATGGCTGGCATTTGGGTGGCGGTAGGACTGATGGCGTCCGCCGCAGGTCAACATCCGGGTCACCCCTACTGCCTTTTGGTGAAATGCGAAAAATGTCACAATTTGAGGAGGAGGAGGATGGGGATTTGCGGAGGAGTTATTCACCACCACCACAACCACCGGTACCTGTTCCGGCATCTGTTCCTTTGGAGTTAAAACACAGACGTGATAGCGTTGAGGCTGGAAATTATAGTGTCAATGATGATTTGAATAGTAGGAGAGTTTATGGCTCCGAGCATAATGATTTTGGAATCAGTAAAGAAGATTTGAATGAAAGCAGATTGACAGCTGGTGGTAAACATGGGACATTGGGTCAAAAACCAATCCATATGGAAGATAGTGCTGTAAGAGGATCCAAAACCATGTTTATCAAAGGTGACACCGTGCATGGAGCATATCATTCTTCTCCAAGCCTTGGTACTGTTATAACTCAAGGAGCAAGGGGTGGCCACCTACCATCATCAACGCGCAGCATGAGTATACGTCATTCTGAACAAGAAAGGCTTCAGTATGCGGACCCTATATCTTTGGATAGATTACCAGTGACAGAAGCCTACAAAGAAGGAAATAAACCCGTTTTTCCTACAAGAGATGGCTTTTATTCCATGATGTCTGGATCTCATTCCAAGAATTATTTTGCTAGCTCCTCAACGAATGAATTCCAAGATTCCTATCAGCATGAGCAGCATATGCCTTCTTTGGAAGAATTTTCAAGAAGTAGTAGAAAACTTAAAGATTCTGTGAGCATTAATGCATATAGGGAAAGGCCGGTAGTAGAGTTTTCTCGAGACCCTGATTCTGGGCAGAAGAATCTGACATTTTACCAGAGAGATAGTCCTACTAGAGTTGAGTATGATGATGATTATTATTTCTACCCAAACTCAAGGGGAATGATCTTTGACGATCGTGAGCTTCCATCTGATCACTTACACAAAGTGATGCATCCACGAGCACCACTTGACTATGACCATTCTCGGATGGGTTATGATCATAGAACTGTGTCAAGATCTAGTACCATGCTCCCTGTTGTGGAAAGAATTAATAATACTGAGGATTATTCTGGAAATTCAAGGAAGCGCATTATGCTGAATAATTCTACTTTAGAAAGGCATACACTATCAGACTACCCTGATATAAGCAGAATATCAAGTGCATCGAAGCAGAGTGGAGAATATATGGGTTCTGGACGCATGCATGACAAGTTTGGAAGGAGAATTTCACAAGATTATGAAACATCGCATTTGGGTGCAGCGCAAGTTTGTCAAATCTCACATCTGAAAGAAGATTATGGTTATGAAAGAGATGGAAACCTGAAGTATCAGGACAGACAGTGTCCTGTGTCTAAATACGACCCAGAAATGCATAGAAATACTATTAGAATGCAGAGTATGAGAGACAAGCTTGGGGTATATGAACCATCAGATAGGGTGGTGAAAAGAAAATATGTTAATGAAGAGCATGGAAGTATCCAGAATCCTAGAGAAATTATGTCAGGTAAATGGAATACCTCTAGAGAGTTTCAAGATTTGTATGATAGTGGTGAAGAGTGGAATGGTGAAGATGTAGGATCTATGTATACACCTAGATCAGCAAGATTGGGCCATAATGAACACTATAAGGCCCAGAGGAAATATGCTGGAATAGACCAGTATGATGAATTTGCATCTGATGATCGGCTGCCGTCTCAAGACTCTTTGGCAGATGCACAAAGGCACTCAGTGAGATATTATAAACATGGTGATCGGTATGCCAAGGGTCACCAAAACTATGGTTCATTAAGTAGGCATAGGTCACAGCAAGTTGACATAAAAAGTGGCTTTCACAAACAGCACAAAGTTTGGAAGAGAAATGATAATTATCTAGAGGATGTCCACAGAGGTGATGATAATGATGCTGATACATCAGAAAATGGGTTGAGTTCCGCAGCTCCTGAGCCATCAGAGGATTCTGAGGAGTTTATGCAATTGGTACAAGAAGCCTTCCTAACATACTCTAAACAATTAAATATGAACCCTGGTGTTCGGAGAAGATACATGGAACAAGGAAAGGCTGGGACTTTATTCTGCATCGTATGTGGCCGAAGGTCTGTTTTCTTTTCTGTCATGTTCTTTCTAAGTGGGGTTCCTGTTTTATCTTTTCGTTCCGGAGTTTTTAAATATTACTCTTACAGATGCAGTCAACTTAGTATGCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

817

Amino Acids

94.03

Weight (kDa)

8.66

Isoelectric Point (pI)

67.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009713)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g05850 FvH4_7g05850 FvH4_7g05850
malus_domestica	MD02G1254600.v1.1 MD07G1067200.v1.1
prunus_persica	Prupe.2G084400_v2.0.a1 Prupe.2G084400_v2.0.a1
pyrus_communis	pycom02g21450 pycom07g05140
rosa_chinensis	RchiOBHm_Chr1g0332961
rosa_laevigata	RLG00000029630
rosa_multiflora	Rmu_co8522447.1_g000002 Rmu_sc0000117.1_g000033 Rmu_sc0000813.1_g000010
rosa_roxburghii	Rroxscaffold_4G00317840
rosa_rugosa	Rorug01G0106200
rosa_samantha	Rh1AG129400 Rh1BG098600 Rh1CG123300 Rh1DG135200
rosa_wichuraiana	Rw0G014350 Rw1G010360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	686, 1989
Acc36I	ACCTGC	2 cut(s)	121, 255
Acc65I	GGTACC	1 cut(s)	382
AccB1I	GGYRCC	2 cut(s)	83, 382
AccB7I	CCANNNNNTGG	1 cut(s)	674
AccI	GTMKAC	2 cut(s)	739, 1835
AccII	CGCG	1 cut(s)	727
AccIII	TCCGGA	1 cut(s)	2402
AciI	CCGC	7 cut(s)	164, 240, 259, 262, 349, 773, 2181
AclWI	GGATC	4 cut(s)	606, 619, 883, 1834
AcoI	YGGCCR	2 cut(s)	706, 2335
AcsI	RAATTY	5 cut(s)	917, 965, 1324, 1473, 1916
AcuI	CTGAAG	2 cut(s)	749, 1592
AcyI	GRCGYC	1 cut(s)	255
AdeI	CACNNNGTG	2 cut(s)	1195, 1978
AfaI	GTAC	5 cut(s)	135, 384, 679, 1273, 2229
AfiI	CCNNNNNNNGG	3 cut(s)	674, 1058, 1288
AgeI	ACCGGT	1 cut(s)	379
AgsI	TTSAA	6 cut(s)	28, 469, 529, 972, 1329, 1781
AhdI	GACNNNNNGTC	1 cut(s)	570
AjiI	CACGTC	1 cut(s)	425
AjnI	CCWGG	1 cut(s)	2272
AleI	CACNNNNGTG	2 cut(s)	423, 2136
AluBI	AGCT	5 cut(s)	548, 903, 1171, 1660, 2186
AluI	AGCT	5 cut(s)	548, 903, 1171, 1660, 2186
Alw21I	GWGCWC	1 cut(s)	1213
Alw26I	GTCTC	4 cut(s)	115, 1041, 1647, 1947
AlwI	GGATC	4 cut(s)	606, 619, 883, 1834
AlwNI	CAGNNNCTG	1 cut(s)	2189
Ama87I	CYCGRG	1 cut(s)	1044
Aor13HI	TCCGGA	1 cut(s)	2402
AoxI	GGCC	5 cut(s)	706, 1025, 1858, 1878, 2335
ApeKI	GCWGC	6 cut(s)	37, 729, 943, 1508, 1936, 2183
ApoI	RAATTY	5 cut(s)	917, 965, 1324, 1473, 1916
AseI	ATTAAT	2 cut(s)	1008, 1299
AsiGI	ACCGGT	1 cut(s)	379
Asp700I	GAANNNNTTC	2 cut(s)	762, 917
Asp718I	GGTACC	1 cut(s)	382
AspA2I	CCTAGG	1 cut(s)	8
AspLEI	GCGC	3 cut(s)	729, 1338, 1513
AspS9I	GGNCC	3 cut(s)	775, 1858, 1879
AsuC2I	CCSGG	1 cut(s)	277
AsuII	TTCGAA	1 cut(s)	75
AsuNHI	GCTAGC	1 cut(s)	899
AvaI	CYCGRG	1 cut(s)	1044
AvaII	GGWCC	1 cut(s)	775
AvrII	CCTAGG	1 cut(s)	8
BalI	TGGCCA	1 cut(s)	708
BamHI	GGATCC	1 cut(s)	611
BanI	GGYRCC	2 cut(s)	83, 382
BanII	GRGCYC	1 cut(s)	164
BauI	CACGAG	2 cut(s)	17, 1206
Bbv12I	GWGCWC	1 cut(s)	1213
BbvI	GCAGC	6 cut(s)	49, 741, 955, 1520, 1923, 2195
BccI	CCATC	9 cut(s)	245, 332, 724, 845, 1183, 1231, 1556, 1684, 2203
BceAI	ACGGC	1 cut(s)	1924
BcgI	CGANNNNNNTGC	4 cut(s)	65, 99, 119, 153
BciT130I	CCWGG	1 cut(s)	2274
BciVI	GTATCC	1 cut(s)	1736
BclI	TGATCA	2 cut(s)	1180, 1246
BcnI	CCSGG	1 cut(s)	277
BcoDI	GTCTC	4 cut(s)	115, 1041, 1647, 1947
BfaI	CTAG	8 cut(s)	9, 900, 1101, 1269, 1737, 1770, 1842, 2120
BfuAI	ACCTGC	2 cut(s)	121, 255
BfuI	GTATCC	1 cut(s)	1736
BglII	AGATCT	1 cut(s)	1265
BisI	GCNGC	7 cut(s)	38, 262, 730, 944, 1509, 1937, 2184
BlnI	CCTAGG	1 cut(s)	8
BlsI	GCNGC	7 cut(s)	39, 263, 731, 945, 1510, 1938, 2185
Bme1390I	CCNGG	2 cut(s)	277, 2274
Bme18I	GGWCC	1 cut(s)	775
BmeRI	GACNNNNNGTC	1 cut(s)	570
BmeT110I	CYCGRG	1 cut(s)	1044
BmgBI	CACGTC	1 cut(s)	425
BmgT120I	GGNCC	3 cut(s)	775, 1858, 1879
BmiI	GGNNCC	6 cut(s)	85, 384, 490, 613, 777, 2382
BmrFI	CCNGG	2 cut(s)	277, 2274
BmsI	GCATC	9 cut(s)	404, 1188, 1210, 1421, 1931, 1951, 2140, 2334, 2420
BmtI	GCTAGC	1 cut(s)	903
Bpu10I	CCTNAGC	2 cut(s)	126, 2190
Bpu14I	TTCGAA	1 cut(s)	75
BpuEI	CTTGAG	3 cut(s)	675, 1126, 1929
BpuMI	CCSGG	1 cut(s)	277
BsaBI	GATNNNNATC	3 cut(s)	76, 930, 2115
BsaHI	GRCGYC	1 cut(s)	255
BsaI	GGTCTC	2 cut(s)	115, 1041
BsaJI	CCNNGG	4 cut(s)	8, 673, 2010, 2272
BsaWI	WCCGGW	3 cut(s)	80, 379, 2402
Bsc4I	CCNNNNNNNGG	3 cut(s)	674, 1058, 1288
Bse118I	RCCGGY	2 cut(s)	379, 1027
Bse1I	ACTGG	2 cut(s)	800, 1906
Bse8I	GATNNNNATC	3 cut(s)	76, 930, 2115
BseAI	TCCGGA	1 cut(s)	2402
BseBI	CCWGG	1 cut(s)	2274
BseDI	CCNNGG	4 cut(s)	8, 673, 2010, 2272
BseGI	GGATG	5 cut(s)	272, 343, 1201, 1242, 2131
BseJI	GATNNNNATC	3 cut(s)	76, 930, 2115
BseLI	CCNNNNNNNGG	3 cut(s)	674, 1058, 1288
BseMII	CTCAG	5 cut(s)	117, 1299, 1989, 2181, 2199
BseNI	ACTGG	2 cut(s)	800, 1906
BseRI	GAGGAG	8 cut(s)	133, 166, 341, 344, 347, 367, 895, 2225
BseXI	GCAGC	6 cut(s)	49, 741, 955, 1520, 1923, 2195
BseYI	CCCAGC	1 cut(s)	2309
BsgI	GTGCAG	1 cut(s)	1527
Bsh1236I	CGCG	1 cut(s)	727
Bsh1285I	CGRYCG	1 cut(s)	1165
BshFI	GGCC	5 cut(s)	708, 1027, 1860, 1880, 2337
BshNI	GGYRCC	2 cut(s)	83, 382
BshTI	ACCGGT	1 cut(s)	379
BsiEI	CGRYCG	1 cut(s)	1165
BsiHKAI	GWGCWC	1 cut(s)	1213
BsiHKCI	CYCGRG	1 cut(s)	1044
BsiSI	CCGG	7 cut(s)	44, 81, 276, 380, 392, 1028, 2403
BslFI	GGGAC	3 cut(s)	45, 577, 2326
BslI	CCNNNNNNNGG	3 cut(s)	674, 1058, 1288
BsmAI	GTCTC	4 cut(s)	115, 1041, 1647, 1947
BsmBI	CGTCTC	1 cut(s)	1947
BsmFI	GGGAC	3 cut(s)	45, 577, 2326
BsmI	GAATGC	1 cut(s)	1644
BsnI	GGCC	5 cut(s)	708, 1027, 1860, 1880, 2337
Bso31I	GGTCTC	2 cut(s)	115, 1041
BsoBI	CYCGRG	1 cut(s)	1044
Bsp119I	TTCGAA	1 cut(s)	75
Bsp1286I	GDGCHC	2 cut(s)	164, 1213
Bsp13I	TCCGGA	1 cut(s)	2402
BspACI	CCGC	7 cut(s)	164, 240, 259, 262, 349, 773, 2181
BspANI	GGCC	5 cut(s)	708, 1027, 1860, 1880, 2337
BspCNI	CTCAG	5 cut(s)	118, 1300, 1988, 2182, 2200
BspEI	TCCGGA	1 cut(s)	2402
BspFNI	CGCG	1 cut(s)	727
BspLI	GGNNCC	6 cut(s)	85, 384, 490, 613, 777, 2382
BspMI	ACCTGC	2 cut(s)	121, 255
BspOI	GCTAGC	1 cut(s)	903
BspPI	GGATC	4 cut(s)	606, 619, 883, 1834
BspQI	GCTCTTC	1 cut(s)	1707
BspT104I	TTCGAA	1 cut(s)	75
BspT107I	GGYRCC	2 cut(s)	83, 382
BspTNI	GGTCTC	2 cut(s)	115, 1041
BsrFI	RCCGGY	2 cut(s)	379, 1027
BsrI	ACTGG	2 cut(s)	800, 1906
BssAI	RCCGGY	2 cut(s)	379, 1027
BssECI	CCNNGG	4 cut(s)	8, 673, 2010, 2272
BssNAI	GTATAC	2 cut(s)	740, 1836
BssNI	GRCGYC	1 cut(s)	255
BssSI	CACGAG	2 cut(s)	17, 1206
BssT1I	CCWWGG	3 cut(s)	8, 673, 2010
Bst1107I	GTATAC	2 cut(s)	740, 1836
Bst2BI	CACGAG	2 cut(s)	17, 1206
Bst2UI	CCWGG	1 cut(s)	2274
Bst4CI	ACNGT	4 cut(s)	643, 682, 1258, 1590
Bst6I	CTCTTC	3 cut(s)	1707, 1797, 2096
BstACI	GRCGYC	1 cut(s)	255
BstAPI	GCANNNNNTGC	1 cut(s)	949
BstBI	TTCGAA	1 cut(s)	75
BstC8I	GCNNGC	4 cut(s)	164, 227, 901, 1451
BstDEI	CTNAG	7 cut(s)	126, 1308, 1975, 2190, 2208, 2372, 2441
BstEII	GGTNACC	2 cut(s)	279, 2015
BstF5I	GGATG	5 cut(s)	272, 343, 1201, 1242, 2131
BstFNI	CGCG	1 cut(s)	727
BstHHI	GCGC	3 cut(s)	729, 1338, 1513
BstMAI	GTCTC	4 cut(s)	115, 1041, 1647, 1947
BstMCI	CGRYCG	1 cut(s)	1165
BstMWI	GCNNNNNNNGC	4 cut(s)	261, 943, 949, 1342
BstNI	CCWGG	1 cut(s)	2274
BstNSI	RCATGY	1 cut(s)	1453
BstPI	GGTNACC	2 cut(s)	279, 2015
BstSCI	CCNGG	2 cut(s)	275, 2272
BstUI	CGCG	1 cut(s)	727
BstV1I	GCAGC	6 cut(s)	49, 741, 955, 1520, 1923, 2195
BstX2I	RGATCY	4 cut(s)	611, 875, 1265, 1826
BstXI	CCANNNNNNTGG	1 cut(s)	2027
BstYI	RGATCY	4 cut(s)	611, 875, 1265, 1826
BstZ17I	GTATAC	2 cut(s)	740, 1836
BsuI	GTATCC	1 cut(s)	1736
BsuRI	GGCC	5 cut(s)	708, 1027, 1860, 1880, 2337
BtgZI	GCGATG	1 cut(s)	1479
BtrI	CACGTC	1 cut(s)	425
BtsCI	GGATG	5 cut(s)	272, 343, 1201, 1242, 2131
BtsIMutI	CAGTG	3 cut(s)	807, 1595, 1983
BveI	ACCTGC	2 cut(s)	121, 255
Cac8I	GCNNGC	4 cut(s)	164, 227, 901, 1451
CaiI	CAGNNNCTG	1 cut(s)	2189
CfoI	GCGC	3 cut(s)	729, 1338, 1513
Cfr10I	RCCGGY	2 cut(s)	379, 1027
Cfr13I	GGNCC	3 cut(s)	775, 1858, 1879
CseI	GACGC	2 cut(s)	244, 1455
Csp6I	GTAC	5 cut(s)	134, 383, 678, 1272, 2228
CspAI	ACCGGT	1 cut(s)	379
CviQI	GTAC	5 cut(s)	134, 383, 678, 1272, 2228
DdeI	CTNAG	7 cut(s)	126, 1308, 1975, 2190, 2208, 2372, 2441
DraI	TTTAAA	1 cut(s)	2413
DraIII	CACNNNGTG	2 cut(s)	1195, 1978
DriI	GACNNNNNGTC	1 cut(s)	570
EaeI	YGGCCR	2 cut(s)	706, 2335
Eam1104I	CTCTTC	3 cut(s)	1707, 1797, 2096
Eam1105I	GACNNNNNGTC	1 cut(s)	570
EarI	CTCTTC	3 cut(s)	1707, 1797, 2096
EciI	GGCGGA	1 cut(s)	248
Eco130I	CCWWGG	3 cut(s)	8, 673, 2010
Eco24I	GRGCYC	1 cut(s)	164
Eco31I	GGTCTC	2 cut(s)	115, 1041
Eco47I	GGWCC	1 cut(s)	775
Eco57I	CTGAAG	2 cut(s)	749, 1592
Eco88I	CYCGRG	1 cut(s)	1044
Eco91I	GGTNACC	2 cut(s)	279, 2015
EcoO65I	GGTNACC	2 cut(s)	279, 2015
EcoRI	GAATTC	1 cut(s)	917
EcoRII	CCWGG	1 cut(s)	2272
EcoT14I	CCWWGG	3 cut(s)	8, 673, 2010
EcoT22I	ATGCAT	4 cut(s)	1015, 1203, 1455, 1623
EcoT38I	GRGCYC	1 cut(s)	164
ErhI	CCWWGG	3 cut(s)	8, 673, 2010
Esp3I	CGTCTC	1 cut(s)	1947
FalI	AAGNNNNNCTT	2 cut(s)	747, 779
FaqI	GGGAC	3 cut(s)	45, 577, 2326
FauI	CCCGC	1 cut(s)	171
FauNDI	CATATG	2 cut(s)	588, 948
FbaI	TGATCA	2 cut(s)	1180, 1246
FblI	GTMKAC	2 cut(s)	739, 1835
Fnu4HI	GCNGC	7 cut(s)	38, 262, 730, 944, 1509, 1937, 2184
FokI	GGATG	5 cut(s)	259, 350, 1188, 1249, 2138
FriOI	GRGCYC	1 cut(s)	164
Fsp4HI	GCNGC	7 cut(s)	38, 262, 730, 944, 1509, 1937, 2184
FspBI	CTAG	8 cut(s)	9, 900, 1101, 1269, 1737, 1770, 1842, 2120
GlaI	GCGC	3 cut(s)	728, 1337, 1512
GluI	GCNGC	7 cut(s)	38, 262, 730, 944, 1509, 1937, 2184
GsaI	CCCAGC	1 cut(s)	2313
HaeIII	GGCC	5 cut(s)	708, 1027, 1860, 1880, 2337
HapII	CCGG	7 cut(s)	44, 81, 276, 380, 392, 1028, 2403
HgaI	GACGC	2 cut(s)	244, 1455
HhaI	GCGC	3 cut(s)	729, 1338, 1513
Hin1I	GRCGYC	1 cut(s)	255
Hin6I	GCGC	3 cut(s)	727, 1336, 1511
HinP1I	GCGC	3 cut(s)	727, 1336, 1511
HincII	GTYRAC	3 cut(s)	270, 2062, 2438
HindII	GTYRAC	3 cut(s)	270, 2062, 2438
HindIII	AAGCTT	1 cut(s)	1658
HpaII	CCGG	7 cut(s)	44, 81, 276, 380, 392, 1028, 2403
Hpy166II	GTNNAC	7 cut(s)	270, 557, 740, 1836, 2062, 2131, 2438
Hpy8I	GTNNAC	7 cut(s)	270, 557, 740, 1836, 2062, 2131, 2438
HpyAV	CCTTC	5 cut(s)	815, 963, 1461, 2248, 2334
HpyCH4III	ACNGT	4 cut(s)	643, 682, 1258, 1590
HpyCH4IV	ACGT	3 cut(s)	58, 424, 742
HpyF10VI	GCNNNNNNNGC	4 cut(s)	261, 943, 949, 1342
HpyF3I	CTNAG	7 cut(s)	126, 1308, 1975, 2190, 2208, 2372, 2441
HpySE526I	ACGT	3 cut(s)	58, 424, 742
Hsp92I	GRCGYC	1 cut(s)	255
HspAI	GCGC	3 cut(s)	727, 1336, 1511
Kpn2I	TCCGGA	1 cut(s)	2402
KpnI	GGTACC	1 cut(s)	386
Ksp22I	TGATCA	2 cut(s)	1180, 1246
LguI	GCTCTTC	1 cut(s)	1707
LmnI	GCTCC	6 cut(s)	494, 650, 695, 908, 1284, 2191
Lsp1109I	GCAGC	6 cut(s)	49, 741, 955, 1520, 1923, 2195
LweI	GCATC	9 cut(s)	404, 1188, 1210, 1421, 1931, 1951, 2140, 2334, 2420
MaeI	CTAG	8 cut(s)	9, 900, 1101, 1269, 1737, 1770, 1842, 2120
MaeII	ACGT	3 cut(s)	58, 424, 742
MaeIII	GTNAC	6 cut(s)	279, 315, 635, 802, 2015, 2049
MfeI	CAATTG	1 cut(s)	2222
MflI	RGATCY	4 cut(s)	611, 875, 1265, 1826
MhlI	GDGCHC	2 cut(s)	164, 1213
MlsI	TGGCCA	1 cut(s)	708
MluNI	TGGCCA	1 cut(s)	708
MlyI	GAGTC	1 cut(s)	1943
Mox20I	TGGCCA	1 cut(s)	708
Mph1103I	ATGCAT	4 cut(s)	1015, 1203, 1455, 1623
MroI	TCCGGA	1 cut(s)	2402
MroXI	GAANNNNTTC	2 cut(s)	762, 917
MscI	TGGCCA	1 cut(s)	708
MseI	TTAA	8 cut(s)	413, 990, 1008, 1299, 1707, 2036, 2261, 2412
MslI	CAYNNNNRTG	5 cut(s)	180, 234, 423, 1503, 2136
Msp20I	TGGCCA	1 cut(s)	708
MspA1I	CMGCKG	1 cut(s)	548
MspI	CCGG	7 cut(s)	44, 81, 276, 380, 392, 1028, 2403
MspR9I	CCNGG	2 cut(s)	277, 2274
MunI	CAATTG	1 cut(s)	2222
Mva1269I	GAATGC	1 cut(s)	1644
MvaI	CCWGG	1 cut(s)	2274
MvnI	CGCG	1 cut(s)	727
MwoI	GCNNNNNNNGC	4 cut(s)	261, 943, 949, 1342
NciI	CCSGG	1 cut(s)	277
NdeI	CATATG	2 cut(s)	588, 948
NheI	GCTAGC	1 cut(s)	899
NlaIV	GGNNCC	6 cut(s)	85, 384, 490, 613, 777, 2382
NmuCI	GTSAC	6 cut(s)	279, 315, 635, 802, 2015, 2049
NsiI	ATGCAT	4 cut(s)	1015, 1203, 1455, 1623
NspI	RCATGY	1 cut(s)	1453
NspV	TTCGAA	1 cut(s)	75
OliI	CACNNNNGTG	2 cut(s)	423, 2136
PaeI	GCATGC	1 cut(s)	1453
PaeR7I	CTCGAG	1 cut(s)	1044
PciSI	GCTCTTC	1 cut(s)	1707
PctI	GAATGC	1 cut(s)	1644
PdmI	GAANNNNTTC	2 cut(s)	762, 917
PfeI	GAWTC	9 cut(s)	72, 77, 510, 926, 995, 1055, 1069, 1732, 2204
PflFI	GACNNNGTC	1 cut(s)	1590
PflMI	CCANNNNNTGG	1 cut(s)	674
PinAI	ACCGGT	1 cut(s)	379
PkrI	GCNGC	7 cut(s)	39, 263, 731, 945, 1510, 1938, 2185
Ple19I	CGATCG	1 cut(s)	1165
PleI	GAGTC	1 cut(s)	1943
PpsI	GAGTC	1 cut(s)	1943
PshBI	ATTAAT	2 cut(s)	1008, 1299
PsiI	TTATAA	2 cut(s)	686, 1989
Psp6I	CCWGG	1 cut(s)	2272
PspEI	GGTNACC	2 cut(s)	279, 2015
PspFI	CCCAGC	1 cut(s)	2309
PspGI	CCWGG	1 cut(s)	2272
PspN4I	GGNNCC	6 cut(s)	85, 384, 490, 613, 777, 2382
PspPI	GGNCC	3 cut(s)	775, 1858, 1879
PstNI	CAGNNNCTG	1 cut(s)	2189
PsuI	RGATCY	4 cut(s)	611, 875, 1265, 1826
PsyI	GACNNNGTC	1 cut(s)	1590
PvuI	CGATCG	1 cut(s)	1165
PvuII	CAGCTG	1 cut(s)	548
RsaI	GTAC	5 cut(s)	135, 384, 679, 1273, 2229
RsaNI	GTAC	5 cut(s)	134, 383, 678, 1272, 2228
RseI	CAYNNNNRTG	5 cut(s)	180, 234, 423, 1503, 2136
SapI	GCTCTTC	1 cut(s)	1707
SaqAI	TTAA	8 cut(s)	413, 990, 1008, 1299, 1707, 2036, 2261, 2412
SatI	GCNGC	7 cut(s)	38, 262, 730, 944, 1509, 1937, 2184
Sau96I	GGNCC	3 cut(s)	775, 1858, 1879
SchI	GAGTC	1 cut(s)	1943
ScrFI	CCNGG	2 cut(s)	277, 2274
SduI	GDGCHC	2 cut(s)	164, 1213
SfaNI	GCATC	9 cut(s)	404, 1188, 1210, 1421, 1931, 1951, 2140, 2334, 2420
Sfr274I	CTCGAG	1 cut(s)	1044
SfuI	TTCGAA	1 cut(s)	75
SinI	GGWCC	1 cut(s)	775
SlaI	CTCGAG	1 cut(s)	1044
SmiMI	CAYNNNNRTG	5 cut(s)	180, 234, 423, 1503, 2136
SmlI	CTYRAG	4 cut(s)	690, 1044, 1141, 1944
SmoI	CTYRAG	4 cut(s)	690, 1044, 1141, 1944
SphI	GCATGC	1 cut(s)	1453
SsiI	CCGC	7 cut(s)	164, 240, 259, 262, 349, 773, 2181
SspI	AATATT	1 cut(s)	2417
SspMI	CTAG	8 cut(s)	9, 900, 1101, 1269, 1737, 1770, 1842, 2120
StyD4I	CCNGG	2 cut(s)	275, 2272
StyI	CCWWGG	3 cut(s)	8, 673, 2010
TaaI	ACNGT	4 cut(s)	643, 682, 1258, 1590
TaiI	ACGT	3 cut(s)	61, 427, 745
TaqI	TCGA	3 cut(s)	75, 1045, 1415
TauI	GCSGC	1 cut(s)	264
TfiI	GAWTC	9 cut(s)	72, 77, 510, 926, 995, 1055, 1069, 1732, 2204
Tru1I	TTAA	8 cut(s)	413, 990, 1008, 1299, 1707, 2036, 2261, 2412
Tru9I	TTAA	8 cut(s)	413, 990, 1008, 1299, 1707, 2036, 2261, 2412
TscAI	CASTG	3 cut(s)	807, 1595, 1983
TseFI	GTSAC	6 cut(s)	279, 315, 635, 802, 2015, 2049
TseI	GCWGC	6 cut(s)	37, 729, 943, 1508, 1936, 2183
Tsp45I	GTSAC	6 cut(s)	279, 315, 635, 802, 2015, 2049
TspRI	CASTG	3 cut(s)	807, 1595, 1983
Tth111I	GACNNNGTC	1 cut(s)	1590
Van91I	CCANNNNNTGG	1 cut(s)	674
VpaK11BI	GGWCC	1 cut(s)	775
VspI	ATTAAT	2 cut(s)	1008, 1299
XapI	RAATTY	5 cut(s)	917, 965, 1324, 1473, 1916
XbaI	TCTAGA	2 cut(s)	1769, 2119
XceI	RCATGY	1 cut(s)	1453
XhoI	CTCGAG	1 cut(s)	1044
XmaJI	CCTAGG	1 cut(s)	8
XmiI	GTMKAC	2 cut(s)	739, 1835
XmnI	GAANNNNTTC	2 cut(s)	762, 917
XspI	CTAG	8 cut(s)	9, 900, 1101, 1269, 1737, 1770, 1842, 2120
Zsp2I	ATGCAT	4 cut(s)	1015, 1203, 1455, 1623

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.