Rw0G014350

XS domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00645
OG0009713
Physical Location & Seq
Forward (+)
49908 .. 55007
5100 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G014350.1

Sequence Viewer

Length: 2904 bp
ATGCAACCTAGGAGGCACGAGAGTTTCAATAGACAGCAGCCTCCGGCTTCTAAATTACGTCCCACCTACCGATTCGAATCCGGTGCCAACAACCACCCTTATAGTAGTGGTAGTAGGAGGAGACCTGAGGAGGTACATCGGAATATTAGGAGGAGTTTGAGCCCGCAACAAGATCATCTGGGTGTCAGTCAAAGGAATGTTGCTTCTATTCAGAGGGAGTATGGCTGGCATTTGGGCGGCGGTAGGACTGATGGCGTCCGCCGCAGGTCAACATCTGGGTCACCCCTACTGCCTTTTGGTGAAATGCGAAAAATGTCACAATTTGAGGAGGAGGAGGATGGGGATTTGCGGAGGAGTTATTCACCACCACCACCACAACCACAACCACCGGTACCTATTCCGGCATCTGTTCCTTTGGAGTTAAAACACAGGCGTGATAGCGTTGAGGCTGGAAATTATAGTGTCAATGATGATTTGAATAGTAGGAGAGTTTATGGCTCCGAGCATAATGATTTTGGAATCAGTAAAGAAGATTTGAATGAAAGCAGATTGACAGCTGGTGGTAAACATGGGACATTGGGTCAAAAACCAATCCATATGGAAGATAGTGCTGTAAGAGGATCCAAAACCATGTTTATCAAAGGTGACACCCTGCATGGAGCATATCATTCTTCTCCAAGCCTTGGTACTGTTATAACTCAAGGAGCAAGGGGTGGCCACCTACCATCATCAACGCGCAGCATGAGTATACGTCATTCTGACCAAGAAAGGCTTCAGTATGCGGACCCTATATCTTTGGATAGATTACCAGTGACAGAAGCCTACAAAGAAGGAAATAAACCCGTTTTTCCTACAAGAGATGGCTTTTATTCCATGATGTCTGGATCTCATTCCAAGAATTATTTTGCTAGCTCCTCAACGAATGAATTCCAAGATTCCTATCAGCATGAGCAGCATATGCCTTCTTGGAAGAATTTTCAAGAAGTAGGAAAGGCGGTAGTAGAGTTTTCTCGAGACCCTGATTCTGGGCAGAAGAATCTGACATTTTACCAGAGAGATAGTCCTACTAGAGTTGAGTATGATGATGATTATTATTTCTACCCAAACTCAAGGGGAATGATCTTTGACGATCGTGAGCTTCCATCTGATCACTTACACAAAGTGATGCATCCACGAGCACCACTTGACTATGACCATTCTCGGATGGGTTATGATCATAGAACTGTGTCAAGATCTAGTACCATGCTCCCTGTTGTGGAAAGAATTGATAATACCGAGGATTATTCTGGAAATTCAAGGAAGCGCATTATGCTGAATAATTCTACTTTAGAAAGGCATACACTATCAGACTACCCTGATATAAGCAGAATATCAAGTGCATCGAAGCAGAGTGGAGAATATATGGGTTCTGGACGCATGCATGACAAGTTTGGAAGGAGAATTTCACAAGATTATGAAACATCGCATTTGGGTGCAGCGCAAGTTTGTCAAATCTCACATCTGAAAGAAGATTATGGTTATGAAAGAGATGGAAACCTGAAGTATCAGGACAGACAGTGTCCTGTGTCTAAATACGACCCAGAAATGCATAGAAATACTATTAGAATGCAGAGTATGAGAGACAAGCTTGGGGTATATGAACCATCAGATAGGGTGGTGAAAAGAAAATATGTTAATGAAGAGCATGGAAGTATCCAGAATCCTAGAGAAATTATGTCAGGTAAATGGAATACCTCTAGAGAGTTTCAAGATTTGTATGATAGTGGTGAAGAGTGGAATGGTGAAGATGTAGGATCTATGTATACATCTAGATCAGCAAGATTGGGCCATAATGAACACTATAAGGCCCAGAGGAAATATGCTGGAATAGACCAGTATGATGAATTTGCATCTGATGATCGGCTGCCGTCTCAAGACTCTTTGGCAGATGCACAAAGGCACTCAGTTAGATATTATAAACATGGTGATCGGTATGCCAAGGGTCACCAAAACTATGGTTCATTAAGTAGGCATAGGTCACAGCAAGTTGACATAAAAAAAATAGAGGATGTCCACAGAGGTGATGATAATGATGCTGATACATCAGAAAATGGGTTGAGTTCCGCAGCTCCTGAGCCATCAGAGGATTCTGAGGAGTTTATGCAATTGGTACAAGAAGCCTTCCTAACATACTCTAAACAATTAAATATGAACCCTGGTGTTCGGAGAAGATACATGGAACAGGGAAAGGCTGGGACTTTATTCTGCATCGTATGTGGCCGAAGCTACTCGAAGGAGTTCATGGACACCCAACGATTGGTAACACATGCATTTATGTCTAAAAAAGCTGGATTGAGGACACAACACTTGGGACTTCTCAAAGCAGTTTGTGCTCTGTTGGGGTGGAGTACTGTTATCCCCACTGACATAGTACTATGGGTTCCCCAGGTCTTGCCCAAGGCAGAAGCTTTGGCTCAGAAGGAAGATTTGATTCTTTGGCCTCCAGTGATTATTATCCACAATATTTCTATGTCAGACAACAATCCTGAAAATTGGAAGGTTGTAAGCATTGAAGCTCTGGAGGCTTTTCTAAGAGAATCAATGTGCCTGGGGAAGCCTGCTGATCAAAGTGTTGTGTTGGTGAAGTTCTTGGGAACTTTCACTGGGCTTGGGAATGCAGAGAGGATTCATAAGTATTTTGCAGAGCAGAACCGTGGCAGAGCAGACTTTGAGCGAGCAACGTCCAACAACGGAAAAATTGTGGAAGCAGGAATGCAGGGAGACAGTGTGGAGGAGCGATTTTTACATGGATATATGGGGATTGCGGAGGACTTAGATAAAGTAGATTTTAATACCAGGAACTGGAGTTTGATAAAGAGCAAGAAGGAGATTCAGGACCTGGCCAATGCTCCTGTTAAACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
XS

Protein Analysis

967

Amino Acids

110.34

Weight (kDa)

6.9

Isoelectric Point (pI)

60.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
XS PF03468 821 - 939 7.2e-16 XS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 695, 1956
Acc36I ACCTGC 1 cut(s) 255
Acc65I GGTACC 1 cut(s) 391
AccB1I GGYRCC 2 cut(s) 83, 391
AccB7I CCANNNNNTGG 3 cut(s) 683, 2296, 2841
AccI GTMKAC 2 cut(s) 748, 1802
AccII CGCG 1 cut(s) 736
AclWI GGATC 4 cut(s) 615, 628, 892, 1801
AcoI YGGCCR 3 cut(s) 715, 2257, 2880
AcsI RAATTY 5 cut(s) 926, 973, 1291, 1440, 1883
AcuI CTGAAG 2 cut(s) 758, 1559
AcyI GRCGYC 1 cut(s) 255
AdeI CACNNNGTG 1 cut(s) 1162
AfaI GTAC 7 cut(s) 135, 393, 688, 1240, 2151, 2389, 2412
AfiI CCNNNNNNNGG 5 cut(s) 683, 1025, 1255, 2296, 2841
AgeI ACCGGT 1 cut(s) 388
AgsI TTSAA 7 cut(s) 28, 478, 538, 980, 1296, 1748, 2552
AhdI GACNNNNNGTC 1 cut(s) 579
AjnI CCWGG 5 cut(s) 2194, 2424, 2586, 2834, 2877
AjuI GAANNNNNNNTTGG 2 cut(s) 756, 788
AleI CACNNNNGTG 2 cut(s) 432, 2058
AluBI AGCT 9 cut(s) 557, 912, 1138, 1627, 2108, 2265, 2327, 2447, 2555
AluI AGCT 9 cut(s) 557, 912, 1138, 1627, 2108, 2265, 2327, 2447, 2555
Alw21I GWGCWC 2 cut(s) 1180, 2374
Alw26I GTCTC 5 cut(s) 115, 1008, 1614, 1914, 2754
AlwI GGATC 4 cut(s) 615, 628, 892, 1801
AlwNI CAGNNNCTG 3 cut(s) 2111, 2841, 2878
Ama87I CYCGRG 1 cut(s) 1011
AoxI GGCC 6 cut(s) 715, 1825, 1845, 2257, 2477, 2880
ApeKI GCWGC 6 cut(s) 37, 738, 952, 1475, 1903, 2105
ApoI RAATTY 5 cut(s) 926, 973, 1291, 1440, 1883
AsiGI ACCGGT 1 cut(s) 388
Asp700I GAANNNNTTC 3 cut(s) 771, 926, 2276
Asp718I GGTACC 1 cut(s) 391
AspA2I CCTAGG 1 cut(s) 8
AspLEI GCGC 3 cut(s) 738, 1305, 1480
AspS9I GGNCC 4 cut(s) 784, 1825, 1846, 2875
AsuII TTCGAA 1 cut(s) 75
AsuNHI GCTAGC 1 cut(s) 908
AvaI CYCGRG 1 cut(s) 1011
AvaII GGWCC 2 cut(s) 784, 2875
AvrII CCTAGG 1 cut(s) 8
AxyI CCTNAGG 1 cut(s) 126
BalI TGGCCA 2 cut(s) 717, 2882
BamHI GGATCC 1 cut(s) 620
BanI GGYRCC 2 cut(s) 83, 391
BanII GRGCYC 1 cut(s) 164
BauI CACGAG 2 cut(s) 17, 1173
Bbv12I GWGCWC 2 cut(s) 1180, 2374
BbvI GCAGC 6 cut(s) 49, 750, 964, 1487, 1890, 2117
BccI CCATC 9 cut(s) 245, 332, 733, 854, 1150, 1198, 1523, 1651, 2125
BceAI ACGGC 1 cut(s) 1891
BcgI CGANNNNNNTGC 2 cut(s) 65, 99
BciT130I CCWGG 5 cut(s) 2196, 2426, 2588, 2836, 2879
BciVI GTATCC 1 cut(s) 1703
BclI TGATCA 3 cut(s) 1147, 1213, 2602
BcoDI GTCTC 5 cut(s) 115, 1008, 1614, 1914, 2754
BfaI CTAG 7 cut(s) 9, 909, 1068, 1236, 1704, 1737, 1809
BfuAI ACCTGC 1 cut(s) 255
BfuI GTATCC 1 cut(s) 1703
BglII AGATCT 1 cut(s) 1232
BisI GCNGC 8 cut(s) 38, 238, 262, 739, 953, 1476, 1904, 2106
BlnI CCTAGG 1 cut(s) 8
BlsI GCNGC 8 cut(s) 39, 239, 263, 740, 954, 1477, 1905, 2107
BmcAI AGTACT 2 cut(s) 2389, 2412
Bme1390I CCNGG 5 cut(s) 2196, 2426, 2588, 2836, 2879
Bme18I GGWCC 2 cut(s) 784, 2875
BmeRI GACNNNNNGTC 1 cut(s) 579
BmeT110I CYCGRG 1 cut(s) 1011
BmgT120I GGNCC 4 cut(s) 784, 1825, 1846, 2875
BmiI GGNNCC 6 cut(s) 85, 393, 499, 622, 786, 2421
BmrFI CCNGG 5 cut(s) 2196, 2426, 2588, 2836, 2879
BmrI ACTGGG 1 cut(s) 2652
BmsI GCATC 8 cut(s) 413, 1155, 1177, 1388, 1898, 1918, 2062, 2256
BmtI GCTAGC 1 cut(s) 912
BmuI ACTGGG 1 cut(s) 2652
BpmI CTGGAG 3 cut(s) 2466, 2579, 2863
Bpu10I CCTNAGC 1 cut(s) 2112
Bpu14I TTCGAA 1 cut(s) 75
BpuEI CTTGAG 3 cut(s) 684, 1093, 1896
BsaBI GATNNNNATC 3 cut(s) 76, 939, 2492
BsaHI GRCGYC 1 cut(s) 255
BsaI GGTCTC 2 cut(s) 115, 1008
BsaJI CCNNGG 9 cut(s) 8, 682, 1275, 1977, 2194, 2424, 2436, 2587, 2692
BsaWI WCCGGW 2 cut(s) 80, 388
BsaXI ACNNNNNCTCC 2 cut(s) 2751, 2781
Bsc4I CCNNNNNNNGG 5 cut(s) 683, 1025, 1255, 2296, 2841
Bse118I RCCGGY 1 cut(s) 388
Bse1I ACTGG 5 cut(s) 809, 1873, 2483, 2647, 2846
Bse21I CCTNAGG 1 cut(s) 126
Bse8I GATNNNNATC 3 cut(s) 76, 939, 2492
BseBI CCWGG 5 cut(s) 2196, 2426, 2588, 2836, 2879
BseDI CCNNGG 9 cut(s) 8, 682, 1275, 1977, 2194, 2424, 2436, 2587, 2692
BseGI GGATG 4 cut(s) 343, 1168, 1209, 2053
BseJI GATNNNNATC 3 cut(s) 76, 939, 2492
BseLI CCNNNNNNNGG 5 cut(s) 683, 1025, 1255, 2296, 2841
BseMII CTCAG 5 cut(s) 117, 1956, 2103, 2121, 2468
BseNI ACTGG 5 cut(s) 809, 1873, 2483, 2647, 2846
BseXI GCAGC 6 cut(s) 49, 750, 964, 1487, 1890, 2117
BseYI CCCAGC 1 cut(s) 2231
BsgI GTGCAG 1 cut(s) 1494
Bsh1236I CGCG 1 cut(s) 736
Bsh1285I CGRYCG 1 cut(s) 1132
BshFI GGCC 6 cut(s) 717, 1827, 1847, 2259, 2479, 2882
BshNI GGYRCC 2 cut(s) 83, 391
BshTI ACCGGT 1 cut(s) 388
BsiEI CGRYCG 1 cut(s) 1132
BsiHKAI GWGCWC 2 cut(s) 1180, 2374
BsiHKCI CYCGRG 1 cut(s) 1011
BsiSI CCGG 4 cut(s) 44, 81, 389, 401
BslFI GGGAC 4 cut(s) 45, 586, 2248, 2364
BslI CCNNNNNNNGG 5 cut(s) 683, 1025, 1255, 2296, 2841
BsmAI GTCTC 5 cut(s) 115, 1008, 1614, 1914, 2754
BsmBI CGTCTC 1 cut(s) 1914
BsmFI GGGAC 4 cut(s) 45, 586, 2248, 2364
BsmI GAATGC 3 cut(s) 1611, 2659, 2757
BsnI GGCC 6 cut(s) 717, 1827, 1847, 2259, 2479, 2882
Bso31I GGTCTC 2 cut(s) 115, 1008
BsoBI CYCGRG 1 cut(s) 1011
Bsp119I TTCGAA 1 cut(s) 75
Bsp1286I GDGCHC 3 cut(s) 164, 1180, 2374
BspANI GGCC 6 cut(s) 717, 1827, 1847, 2259, 2479, 2882
BspCNI CTCAG 5 cut(s) 118, 1955, 2104, 2122, 2467
BspFNI CGCG 1 cut(s) 736
BspLI GGNNCC 6 cut(s) 85, 393, 499, 622, 786, 2421
BspMI ACCTGC 1 cut(s) 255
BspOI GCTAGC 1 cut(s) 912
BspPI GGATC 4 cut(s) 615, 628, 892, 1801
BspQI GCTCTTC 1 cut(s) 1674
BspT104I TTCGAA 1 cut(s) 75
BspT107I GGYRCC 2 cut(s) 83, 391
BspTNI GGTCTC 2 cut(s) 115, 1008
BsrFI RCCGGY 1 cut(s) 388
BsrI ACTGG 5 cut(s) 809, 1873, 2483, 2647, 2846
BssAI RCCGGY 1 cut(s) 388
BssECI CCNNGG 9 cut(s) 8, 682, 1275, 1977, 2194, 2424, 2436, 2587, 2692
BssNAI GTATAC 2 cut(s) 749, 1803
BssNI GRCGYC 1 cut(s) 255
BssSI CACGAG 2 cut(s) 17, 1173
BssT1I CCWWGG 4 cut(s) 8, 682, 1977, 2436
Bst1107I GTATAC 2 cut(s) 749, 1803
Bst2BI CACGAG 2 cut(s) 17, 1173
Bst2UI CCWGG 5 cut(s) 2196, 2426, 2588, 2836, 2879
Bst4CI ACNGT 6 cut(s) 691, 1225, 1557, 2392, 2693, 2765
Bst6I CTCTTC 2 cut(s) 1674, 1764
BstACI GRCGYC 1 cut(s) 255
BstAPI GCANNNNNTGC 2 cut(s) 958, 2369
BstBI TTCGAA 1 cut(s) 75
BstC8I GCNNGC 6 cut(s) 164, 227, 910, 1418, 2598, 2715
BstDEI CTNAG 7 cut(s) 126, 1942, 2112, 2130, 2454, 2570, 2812
BstDSI CCRYGG 1 cut(s) 2692
BstEII GGTNACC 2 cut(s) 279, 1982
BstF5I GGATG 4 cut(s) 343, 1168, 1209, 2053
BstFNI CGCG 1 cut(s) 736
BstHHI GCGC 3 cut(s) 738, 1305, 1480
BstMAI GTCTC 5 cut(s) 115, 1008, 1614, 1914, 2754
BstMCI CGRYCG 1 cut(s) 1132
BstMWI GCNNNNNNNGC 6 cut(s) 261, 952, 958, 1309, 2369, 2561
BstNI CCWGG 5 cut(s) 2196, 2426, 2588, 2836, 2879
BstNSI RCATGY 2 cut(s) 1420, 2309
BstPI GGTNACC 2 cut(s) 279, 1982
BstSCI CCNGG 5 cut(s) 2194, 2424, 2586, 2834, 2877
BstUI CGCG 1 cut(s) 736
BstV1I GCAGC 6 cut(s) 49, 750, 964, 1487, 1890, 2117
BstX2I RGATCY 4 cut(s) 620, 884, 1232, 1793
BstXI CCANNNNNNTGG 1 cut(s) 1994
BstYI RGATCY 4 cut(s) 620, 884, 1232, 1793
BstZ17I GTATAC 2 cut(s) 749, 1803
Bsu36I CCTNAGG 1 cut(s) 126
BsuI GTATCC 1 cut(s) 1703
BsuRI GGCC 6 cut(s) 717, 1827, 1847, 2259, 2479, 2882
BtgI CCRYGG 1 cut(s) 2692
BtgZI GCGATG 1 cut(s) 1446
BtsCI GGATG 4 cut(s) 343, 1168, 1209, 2053
BtsIMutI CAGTG 6 cut(s) 816, 1562, 2400, 2490, 2640, 2770
BveI ACCTGC 1 cut(s) 255
Cac8I GCNNGC 6 cut(s) 164, 227, 910, 1418, 2598, 2715
CaiI CAGNNNCTG 3 cut(s) 2111, 2841, 2878
CfoI GCGC 3 cut(s) 738, 1305, 1480
Cfr10I RCCGGY 1 cut(s) 388
Cfr13I GGNCC 4 cut(s) 784, 1825, 1846, 2875
CseI GACGC 2 cut(s) 244, 1422
Csp6I GTAC 7 cut(s) 134, 392, 687, 1239, 2150, 2388, 2411
CspAI ACCGGT 1 cut(s) 388
CviQI GTAC 7 cut(s) 134, 392, 687, 1239, 2150, 2388, 2411
DdeI CTNAG 7 cut(s) 126, 1942, 2112, 2130, 2454, 2570, 2812
DraIII CACNNNGTG 1 cut(s) 1162
DriI GACNNNNNGTC 1 cut(s) 579
EaeI YGGCCR 3 cut(s) 715, 2257, 2880
Eam1104I CTCTTC 2 cut(s) 1674, 1764
Eam1105I GACNNNNNGTC 1 cut(s) 579
EarI CTCTTC 2 cut(s) 1674, 1764
EciI GGCGGA 1 cut(s) 248
Eco130I CCWWGG 4 cut(s) 8, 682, 1977, 2436
Eco24I GRGCYC 1 cut(s) 164
Eco31I GGTCTC 2 cut(s) 115, 1008
Eco47I GGWCC 2 cut(s) 784, 2875
Eco57I CTGAAG 2 cut(s) 758, 1559
Eco81I CCTNAGG 1 cut(s) 126
Eco88I CYCGRG 1 cut(s) 1011
Eco91I GGTNACC 2 cut(s) 279, 1982
EcoO109I RGGNCCY 1 cut(s) 2875
EcoO65I GGTNACC 2 cut(s) 279, 1982
EcoRI GAATTC 1 cut(s) 926
EcoRII CCWGG 5 cut(s) 2194, 2424, 2586, 2834, 2877
EcoT14I CCWWGG 4 cut(s) 8, 682, 1977, 2436
EcoT22I ATGCAT 4 cut(s) 1170, 1422, 1590, 2311
EcoT38I GRGCYC 1 cut(s) 164
ErhI CCWWGG 4 cut(s) 8, 682, 1977, 2436
Esp3I CGTCTC 1 cut(s) 1914
FalI AAGNNNNNCTT 2 cut(s) 756, 788
FaqI GGGAC 4 cut(s) 45, 586, 2248, 2364
FauI CCCGC 1 cut(s) 171
FauNDI CATATG 2 cut(s) 597, 957
FbaI TGATCA 3 cut(s) 1147, 1213, 2602
FblI GTMKAC 2 cut(s) 748, 1802
Fnu4HI GCNGC 8 cut(s) 38, 238, 262, 739, 953, 1476, 1904, 2106
FokI GGATG 4 cut(s) 350, 1155, 1216, 2060
FriOI GRGCYC 1 cut(s) 164
Fsp4HI GCNGC 8 cut(s) 38, 238, 262, 739, 953, 1476, 1904, 2106
FspBI CTAG 7 cut(s) 9, 909, 1068, 1236, 1704, 1737, 1809
GlaI GCGC 3 cut(s) 737, 1304, 1479
GluI GCNGC 8 cut(s) 38, 238, 262, 739, 953, 1476, 1904, 2106
GsaI CCCAGC 1 cut(s) 2235
GsuI CTGGAG 3 cut(s) 2466, 2579, 2863
HaeIII GGCC 6 cut(s) 717, 1827, 1847, 2259, 2479, 2882
HapII CCGG 4 cut(s) 44, 81, 389, 401
HgaI GACGC 2 cut(s) 244, 1422
HhaI GCGC 3 cut(s) 738, 1305, 1480
Hin1I GRCGYC 1 cut(s) 255
Hin6I GCGC 3 cut(s) 736, 1303, 1478
HinP1I GCGC 3 cut(s) 736, 1303, 1478
HincII GTYRAC 2 cut(s) 270, 2029
HindII GTYRAC 2 cut(s) 270, 2029
HindIII AAGCTT 2 cut(s) 1625, 2445
HpaII CCGG 4 cut(s) 44, 81, 389, 401
Hpy166II GTNNAC 6 cut(s) 270, 566, 749, 1803, 2029, 2053
Hpy8I GTNNAC 6 cut(s) 270, 566, 749, 1803, 2029, 2053
HpyAV CCTTC 8 cut(s) 824, 972, 1428, 2170, 2266, 2452, 2530, 2857
HpyCH4III ACNGT 6 cut(s) 691, 1225, 1557, 2392, 2693, 2765
HpyCH4IV ACGT 3 cut(s) 58, 751, 2720
HpyF10VI GCNNNNNNNGC 6 cut(s) 261, 952, 958, 1309, 2369, 2561
HpyF3I CTNAG 7 cut(s) 126, 1942, 2112, 2130, 2454, 2570, 2812
HpySE526I ACGT 3 cut(s) 58, 751, 2720
Hsp92I GRCGYC 1 cut(s) 255
HspAI GCGC 3 cut(s) 736, 1303, 1478
KpnI GGTACC 1 cut(s) 395
Ksp22I TGATCA 3 cut(s) 1147, 1213, 2602
LguI GCTCTTC 1 cut(s) 1674
LmnI GCTCC 8 cut(s) 503, 659, 704, 917, 1251, 2113, 2773, 2893
Lsp1109I GCAGC 6 cut(s) 49, 750, 964, 1487, 1890, 2117
LweI GCATC 8 cut(s) 413, 1155, 1177, 1388, 1898, 1918, 2062, 2256
MaeI CTAG 7 cut(s) 9, 909, 1068, 1236, 1704, 1737, 1809
MaeII ACGT 3 cut(s) 58, 751, 2720
MaeIII GTNAC 7 cut(s) 279, 315, 644, 811, 1982, 2016, 2299
MfeI CAATTG 1 cut(s) 2144
MflI RGATCY 4 cut(s) 620, 884, 1232, 1793
MhlI GDGCHC 3 cut(s) 164, 1180, 2374
MlsI TGGCCA 2 cut(s) 717, 2882
MluNI TGGCCA 2 cut(s) 717, 2882
MlyI GAGTC 1 cut(s) 1910
MmeI TCCRAC 1 cut(s) 2748
Mox20I TGGCCA 2 cut(s) 717, 2882
Mph1103I ATGCAT 4 cut(s) 1170, 1422, 1590, 2311
MroXI GAANNNNTTC 3 cut(s) 771, 926, 2276
MscI TGGCCA 2 cut(s) 717, 2882
MseI TTAA 6 cut(s) 422, 1674, 2003, 2183, 2829, 2895
MslI CAYNNNNRTG 4 cut(s) 180, 432, 1470, 2058
Msp20I TGGCCA 2 cut(s) 717, 2882
MspA1I CMGCKG 1 cut(s) 557
MspI CCGG 4 cut(s) 44, 81, 389, 401
MspR9I CCNGG 5 cut(s) 2196, 2426, 2588, 2836, 2879
MunI CAATTG 1 cut(s) 2144
Mva1269I GAATGC 3 cut(s) 1611, 2659, 2757
MvaI CCWGG 5 cut(s) 2196, 2426, 2588, 2836, 2879
MvnI CGCG 1 cut(s) 736
MwoI GCNNNNNNNGC 6 cut(s) 261, 952, 958, 1309, 2369, 2561
NdeI CATATG 2 cut(s) 597, 957
NheI GCTAGC 1 cut(s) 908
NlaIV GGNNCC 6 cut(s) 85, 393, 499, 622, 786, 2421
NmuCI GTSAC 6 cut(s) 279, 315, 644, 811, 1982, 2016
NsiI ATGCAT 4 cut(s) 1170, 1422, 1590, 2311
NspI RCATGY 2 cut(s) 1420, 2309
NspV TTCGAA 1 cut(s) 75
OliI CACNNNNGTG 2 cut(s) 432, 2058
PaeI GCATGC 1 cut(s) 1420
PaeR7I CTCGAG 1 cut(s) 1011
PciSI GCTCTTC 1 cut(s) 1674
PctI GAATGC 3 cut(s) 1611, 2659, 2757
PdmI GAANNNNTTC 3 cut(s) 771, 926, 2276
PflFI GACNNNGTC 1 cut(s) 1557
PflMI CCANNNNNTGG 3 cut(s) 683, 2296, 2841
PinAI ACCGGT 1 cut(s) 388
PkrI GCNGC 8 cut(s) 39, 239, 263, 740, 954, 1477, 1905, 2107
Ple19I CGATCG 1 cut(s) 1132
PleI GAGTC 1 cut(s) 1910
PpsI GAGTC 1 cut(s) 1910
PpuMI RGGWCCY 1 cut(s) 2875
PsiI TTATAA 2 cut(s) 695, 1956
Psp5II RGGWCCY 1 cut(s) 2875
Psp6I CCWGG 5 cut(s) 2194, 2424, 2586, 2834, 2877
PspEI GGTNACC 2 cut(s) 279, 1982
PspFI CCCAGC 1 cut(s) 2231
PspGI CCWGG 5 cut(s) 2194, 2424, 2586, 2834, 2877
PspN4I GGNNCC 6 cut(s) 85, 393, 499, 622, 786, 2421
PspPI GGNCC 4 cut(s) 784, 1825, 1846, 2875
PspPPI RGGWCCY 1 cut(s) 2875
PsrI GAACNNNNNNTAC 2 cut(s) 2403, 2435
PstNI CAGNNNCTG 3 cut(s) 2111, 2841, 2878
PsuI RGATCY 4 cut(s) 620, 884, 1232, 1793
PsyI GACNNNGTC 1 cut(s) 1557
PvuI CGATCG 1 cut(s) 1132
PvuII CAGCTG 1 cut(s) 557
RsaI GTAC 7 cut(s) 135, 393, 688, 1240, 2151, 2389, 2412
RsaNI GTAC 7 cut(s) 134, 392, 687, 1239, 2150, 2388, 2411
RseI CAYNNNNRTG 4 cut(s) 180, 432, 1470, 2058
SapI GCTCTTC 1 cut(s) 1674
SaqAI TTAA 6 cut(s) 422, 1674, 2003, 2183, 2829, 2895
SatI GCNGC 8 cut(s) 38, 238, 262, 739, 953, 1476, 1904, 2106
Sau96I GGNCC 4 cut(s) 784, 1825, 1846, 2875
ScaI AGTACT 2 cut(s) 2389, 2412
SchI GAGTC 1 cut(s) 1910
ScrFI CCNGG 5 cut(s) 2196, 2426, 2588, 2836, 2879
SduI GDGCHC 3 cut(s) 164, 1180, 2374
SfaNI GCATC 8 cut(s) 413, 1155, 1177, 1388, 1898, 1918, 2062, 2256
Sfr274I CTCGAG 1 cut(s) 1011
SfuI TTCGAA 1 cut(s) 75
SinI GGWCC 2 cut(s) 784, 2875
SlaI CTCGAG 1 cut(s) 1011
SmiMI CAYNNNNRTG 4 cut(s) 180, 432, 1470, 2058
SmlI CTYRAG 4 cut(s) 699, 1011, 1108, 1911
SmoI CTYRAG 4 cut(s) 699, 1011, 1108, 1911
SphI GCATGC 1 cut(s) 1420
SspI AATATT 2 cut(s) 145, 2503
SspMI CTAG 7 cut(s) 9, 909, 1068, 1236, 1704, 1737, 1809
StyD4I CCNGG 5 cut(s) 2194, 2424, 2586, 2834, 2877
StyI CCWWGG 4 cut(s) 8, 682, 1977, 2436
TaaI ACNGT 6 cut(s) 691, 1225, 1557, 2392, 2693, 2765
TaiI ACGT 3 cut(s) 61, 754, 2723
TaqI TCGA 4 cut(s) 75, 1012, 1382, 2270
TatI WGTACW 2 cut(s) 2387, 2410
TauI GCSGC 2 cut(s) 240, 264
Tru1I TTAA 6 cut(s) 422, 1674, 2003, 2183, 2829, 2895
Tru9I TTAA 6 cut(s) 422, 1674, 2003, 2183, 2829, 2895
TscAI CASTG 6 cut(s) 816, 1562, 2407, 2490, 2647, 2770
TseFI GTSAC 6 cut(s) 279, 315, 644, 811, 1982, 2016
TseI GCWGC 6 cut(s) 37, 738, 952, 1475, 1903, 2105
Tsp45I GTSAC 6 cut(s) 279, 315, 644, 811, 1982, 2016
TspGWI ACGGA 1 cut(s) 2745
TspRI CASTG 6 cut(s) 816, 1562, 2407, 2490, 2647, 2770
Tth111I GACNNNGTC 1 cut(s) 1557
Van91I CCANNNNNTGG 3 cut(s) 683, 2296, 2841
VpaK11BI GGWCC 2 cut(s) 784, 2875
XapI RAATTY 5 cut(s) 926, 973, 1291, 1440, 1883
XbaI TCTAGA 2 cut(s) 1736, 1808
XceI RCATGY 2 cut(s) 1420, 2309
XhoI CTCGAG 1 cut(s) 1011
XmaJI CCTAGG 1 cut(s) 8
XmiI GTMKAC 2 cut(s) 748, 1802
XmnI GAANNNNTTC 3 cut(s) 771, 926, 2276
XspI CTAG 7 cut(s) 9, 909, 1068, 1236, 1704, 1737, 1809
ZrmI AGTACT 2 cut(s) 2389, 2412
Zsp2I ATGCAT 4 cut(s) 1170, 1422, 1590, 2311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.