Rmu_sc0000144.1_g000012

Cytochrome C biogenesis protein transmembrane region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000144.1
OG0009309
Physical Location & Seq
Reverse (-)
41960 .. 44401
2442 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1140 bp
atggaaaggcttctgtcctcttcttcatccccaacccctaaactccatcttaaacaaccctcttcctttcgccacccactcgctcgtctcgacttccccaagctcaatttcccctcctcttcaaagctgcccagtttgagacgggccgccgtctctgtttcctgcaaacatcaaaacccatctccattttcttcgccggacggtttgccgtcgaaccgggtcgggtcggggacaaatgggtcggcgccgaatcccctgcttctcaatcggatcgcagatggcgcctctaagcaacgcaaggccatcaccactggggcatttgttgcgctttctgctcttattttggtcttagtacaacctgcctttgcaccagcggctcttgcttcttttcaaactgcaactaagacaggtggtccagctgctgttgcagttgggggaagactcatccagactgaattacttagtagtgcatggaccggtttctttgctggttgcctgcacacattatcagggcctgaccacctagctgctttggctccactctcaattgggcgtacccgcattgaaagtgctcttgttggagccctctggggatgtggccatgatgctggccaggttatctttggattagtatttctactactgaaggaccagctccatattgaagttattcgaacttggggcacaagagttgttgggcttactttactagttattggtgctatgggcatcaaggaagcttcagaagtcccaagtccttgtgttgccttggagaatggcgagtgtgatgttagtgtgtacgaaactcttgataacccaactgttgggaagaagaagattggatttgctacttttgccaccggaattgtgcatgggctgcagccagatgcattgatgatggtgttgcctgcacttgctttgccatctcgtgttgctggcgctgcatttctagttatgttcttagttgggaccgtagttgccatgggaagctacacagtctttctaggctcatgtagtcaggcattaaaggacagagtgcccagaataacagagaaactgacatgggcttcttccctgattgcaattgctcttggatttgccattattatcagccagttctttgggtatagcctgtattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DsbD_2

Protein Analysis

379

Amino Acids

39.72

Weight (kDa)

9.58

Isoelectric Point (pI)

35.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DsbD_2 PF13386 207 - 351 7.6e-07 Cytochrome C biogenesis protein transmembrane region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 238
Acc36I ACCTGC 1 cut(s) 367
AccB1I GGYRCC 2 cut(s) 244, 281
AccB7I CCANNNNNTGG 1 cut(s) 824
AciI CCGC 3 cut(s) 147, 374, 559
AclWI GGATC 1 cut(s) 278
AcoI YGGCCR 2 cut(s) 598, 610
AcuI CTGAAG 2 cut(s) 665, 726
AcyI GRCGYC 2 cut(s) 245, 282
AfaI GTAC 3 cut(s) 354, 556, 800
AfiI CCNNNNNNNGG 1 cut(s) 824
AgeI ACCGGT 1 cut(s) 476
AgsI TTSAA 4 cut(s) 123, 392, 566, 665
AhdI GACNNNNNGTC 1 cut(s) 411
AhlI ACTAGT 1 cut(s) 709
AjnI CCWGG 1 cut(s) 612
AjuI GAANNNNNNNTTGG 2 cut(s) 92, 124
AluBI AGCT 7 cut(s) 103, 127, 419, 527, 655, 740, 990
AluI AGCT 7 cut(s) 103, 127, 419, 527, 655, 740, 990
Alw21I GWGCWC 1 cut(s) 574
Alw26I GTCTC 3 cut(s) 92, 133, 157
AlwI GGATC 1 cut(s) 278
AlwNI CAGNNNCTG 2 cut(s) 422, 515
AoxI GGCC 5 cut(s) 144, 300, 512, 598, 610
ApeKI GCWGC 6 cut(s) 127, 419, 527, 877, 880, 941
AsiGI ACCGGT 1 cut(s) 476
Asp700I GAANNNNTTC 2 cut(s) 9, 669
AspLEI GCGC 4 cut(s) 247, 284, 328, 941
AspS9I GGNCC 6 cut(s) 144, 413, 474, 512, 649, 969
AsuC2I CCSGG 1 cut(s) 218
AsuHPI GGTGA 1 cut(s) 298
AsuII TTCGAA 1 cut(s) 673
AvaII GGWCC 4 cut(s) 413, 474, 649, 969
BaeGI GKGCMC 2 cut(s) 686, 1041
BalI TGGCCA 2 cut(s) 600, 612
BanI GGYRCC 2 cut(s) 244, 281
BanII GRGCYC 1 cut(s) 586
BauI CACGAG 1 cut(s) 927
BbsI GAAGAC 1 cut(s) 445
Bbv12I GWGCWC 1 cut(s) 574
BbvI GCAGC 6 cut(s) 114, 406, 514, 864, 892, 928
BccI CCATC 6 cut(s) 54, 187, 272, 311, 892, 931
BceAI ACGGC 2 cut(s) 134, 193
BcgI CGANNNNNNTGC 2 cut(s) 238, 272
BciT130I CCWGG 1 cut(s) 614
BcnI CCSGG 1 cut(s) 218
BcoDI GTCTC 3 cut(s) 92, 133, 157
BcuI ACTAGT 1 cut(s) 709
BfaI CTAG 4 cut(s) 524, 710, 950, 1004
BfmI CTRYAG 1 cut(s) 878
BfoI RGCGCY 3 cut(s) 248, 285, 942
BfuAI ACCTGC 1 cut(s) 367
BisI GCNGC 8 cut(s) 128, 147, 375, 420, 528, 878, 881, 942
BlsI GCNGC 8 cut(s) 129, 148, 376, 421, 529, 879, 882, 943
Bme1390I CCNGG 2 cut(s) 218, 614
Bme18I GGWCC 4 cut(s) 413, 474, 649, 969
BmeRI GACNNNNNGTC 1 cut(s) 411
BmgT120I GGNCC 6 cut(s) 144, 413, 474, 512, 649, 969
BmiI GGNNCC 5 cut(s) 246, 283, 537, 583, 970
BmrFI CCNGG 2 cut(s) 218, 614
BmrI ACTGGG 2 cut(s) 126, 321
BmsI GCATC 3 cut(s) 595, 738, 877
BmuI ACTGGG 2 cut(s) 126, 321
BpiI GAAGAC 1 cut(s) 445
Bpu14I TTCGAA 1 cut(s) 673
BpuMI CCSGG 1 cut(s) 218
BsaHI GRCGYC 2 cut(s) 245, 282
BsaJI CCNNGG 2 cut(s) 768, 981
BsaWI WCCGGW 2 cut(s) 476, 860
Bsc4I CCNNNNNNNGG 1 cut(s) 824
Bse118I RCCGGY 1 cut(s) 476
Bse1I ACTGG 3 cut(s) 132, 316, 1114
BseBI CCWGG 1 cut(s) 614
BseDI CCNNGG 2 cut(s) 768, 981
BseGI GGATG 3 cut(s) 26, 444, 599
BseLI CCNNNNNNNGG 1 cut(s) 824
BseNI ACTGG 3 cut(s) 132, 316, 1114
BseRI GAGGAG 1 cut(s) 106
BseSI GKGCMC 2 cut(s) 686, 1041
BseXI GCAGC 6 cut(s) 114, 406, 514, 864, 892, 928
BsgI GTGCAG 2 cut(s) 482, 894
BshFI GGCC 5 cut(s) 146, 302, 514, 600, 612
BshNI GGYRCC 2 cut(s) 244, 281
BshTI ACCGGT 1 cut(s) 476
BsiHKAI GWGCWC 1 cut(s) 574
BsiSI CCGG 4 cut(s) 197, 217, 477, 861
BslFI GGGAC 3 cut(s) 244, 734, 982
BslI CCNNNNNNNGG 1 cut(s) 824
BsmAI GTCTC 3 cut(s) 92, 133, 157
BsmBI CGTCTC 3 cut(s) 92, 133, 157
BsmFI GGGAC 3 cut(s) 244, 734, 982
BsnI GGCC 5 cut(s) 146, 302, 514, 600, 612
Bsp119I TTCGAA 1 cut(s) 673
Bsp1286I GDGCHC 4 cut(s) 574, 586, 686, 1041
Bsp143I GATC 1 cut(s) 270
Bsp19I CCATGG 1 cut(s) 981
BspACI CCGC 3 cut(s) 147, 374, 559
BspANI GGCC 5 cut(s) 146, 302, 514, 600, 612
BspLI GGNNCC 5 cut(s) 246, 283, 537, 583, 970
BspMAI CTGCAG 1 cut(s) 882
BspMI ACCTGC 1 cut(s) 367
BspPI GGATC 1 cut(s) 278
BspT104I TTCGAA 1 cut(s) 673
BspT107I GGYRCC 2 cut(s) 244, 281
BsrFI RCCGGY 1 cut(s) 476
BsrI ACTGG 3 cut(s) 132, 316, 1114
BssAI RCCGGY 1 cut(s) 476
BssECI CCNNGG 2 cut(s) 768, 981
BssMI GATC 1 cut(s) 270
BssNI GRCGYC 2 cut(s) 245, 282
BssSI CACGAG 1 cut(s) 927
BssT1I CCWWGG 2 cut(s) 768, 981
Bst2BI CACGAG 1 cut(s) 927
Bst2UI CCWGG 1 cut(s) 614
Bst4CI ACNGT 4 cut(s) 203, 823, 973, 997
Bst6I CTCTTC 3 cut(s) 25, 67, 124
BstACI GRCGYC 2 cut(s) 245, 282
BstAPI GCANNNNNTGC 2 cut(s) 323, 877
BstBI TTCGAA 1 cut(s) 673
BstC8I GCNNGC 4 cut(s) 497, 610, 909, 937
BstDEI CTNAG 5 cut(s) 288, 349, 402, 461, 961
BstDSI CCRYGG 1 cut(s) 981
BstF5I GGATG 3 cut(s) 26, 444, 599
BstH2I RGCGCY 3 cut(s) 248, 285, 942
BstHHI GCGC 4 cut(s) 247, 284, 328, 941
BstKTI GATC 1 cut(s) 273
BstMAI GTCTC 3 cut(s) 92, 133, 157
BstMBI GATC 1 cut(s) 270
BstNI CCWGG 1 cut(s) 614
BstSCI CCNGG 2 cut(s) 216, 612
BstSFI CTRYAG 1 cut(s) 878
BstSLI GKGCMC 2 cut(s) 686, 1041
BstV1I GCAGC 6 cut(s) 114, 406, 514, 864, 892, 928
BstV2I GAAGAC 1 cut(s) 445
BstXI CCANNNNNNTGG 2 cut(s) 608, 1121
BsuRI GGCC 5 cut(s) 146, 302, 514, 600, 612
BtgI CCRYGG 1 cut(s) 981
BtsCI GGATG 3 cut(s) 26, 444, 599
BtsIMutI CAGTG 1 cut(s) 309
BveI ACCTGC 1 cut(s) 367
Cac8I GCNNGC 4 cut(s) 497, 610, 909, 937
CaiI CAGNNNCTG 2 cut(s) 422, 515
CfoI GCGC 4 cut(s) 247, 284, 328, 941
Cfr10I RCCGGY 1 cut(s) 476
Cfr13I GGNCC 6 cut(s) 144, 413, 474, 512, 649, 969
Csp6I GTAC 3 cut(s) 353, 555, 799
CspAI ACCGGT 1 cut(s) 476
CspCI CAANNNNNGTGG 2 cut(s) 847, 882
CviAII CATG 6 cut(s) 471, 602, 872, 982, 1011, 1062
CviQI GTAC 3 cut(s) 353, 555, 799
DdeI CTNAG 5 cut(s) 288, 349, 402, 461, 961
DinI GGCGCC 2 cut(s) 246, 283
DpnI GATC 1 cut(s) 272
DpnII GATC 1 cut(s) 270
DrdI GACNNNNNNGTC 1 cut(s) 238
DriI GACNNNNNGTC 1 cut(s) 411
DseDI GACNNNNNNGTC 1 cut(s) 238
EaeI YGGCCR 2 cut(s) 598, 610
Eam1104I CTCTTC 3 cut(s) 25, 67, 124
Eam1105I GACNNNNNGTC 1 cut(s) 411
EarI CTCTTC 3 cut(s) 25, 67, 124
Eco130I CCWWGG 2 cut(s) 768, 981
Eco24I GRGCYC 1 cut(s) 586
Eco47I GGWCC 4 cut(s) 413, 474, 649, 969
Eco57I CTGAAG 2 cut(s) 665, 726
EcoO109I RGGNCCY 1 cut(s) 512
EcoRII CCWGG 1 cut(s) 612
EcoT14I CCWWGG 2 cut(s) 768, 981
EcoT22I ATGCAT 1 cut(s) 892
EcoT38I GRGCYC 1 cut(s) 586
EgeI GGCGCC 2 cut(s) 246, 283
EheI GGCGCC 2 cut(s) 246, 283
ErhI CCWWGG 2 cut(s) 768, 981
Esp3I CGTCTC 3 cut(s) 92, 133, 157
FaeI CATG 6 cut(s) 474, 605, 875, 985, 1014, 1065
FaqI GGGAC 3 cut(s) 244, 734, 982
FatI CATG 6 cut(s) 470, 601, 871, 981, 1010, 1061
FauI CCCGC 1 cut(s) 566
Fnu4HI GCNGC 8 cut(s) 128, 147, 375, 420, 528, 878, 881, 942
FokI GGATG 3 cut(s) 13, 431, 606
FriOI GRGCYC 1 cut(s) 586
Fsp4HI GCNGC 8 cut(s) 128, 147, 375, 420, 528, 878, 881, 942
FspBI CTAG 4 cut(s) 524, 710, 950, 1004
GlaI GCGC 4 cut(s) 246, 283, 327, 940
GluI GCNGC 8 cut(s) 128, 147, 375, 420, 528, 878, 881, 942
HaeII RGCGCY 3 cut(s) 248, 285, 942
HaeIII GGCC 5 cut(s) 146, 302, 514, 600, 612
HapII CCGG 4 cut(s) 197, 217, 477, 861
HhaI GCGC 4 cut(s) 247, 284, 328, 941
Hin1I GRCGYC 2 cut(s) 245, 282
Hin1II CATG 6 cut(s) 474, 605, 875, 985, 1014, 1065
Hin6I GCGC 4 cut(s) 245, 282, 326, 939
HinP1I GCGC 4 cut(s) 245, 282, 326, 939
HindIII AAGCTT 1 cut(s) 738
HinfI GANTC 2 cut(s) 250, 441
HpaII CCGG 4 cut(s) 197, 217, 477, 861
HphI GGTGA 1 cut(s) 298
Hpy166II GTNNAC 1 cut(s) 799
Hpy188I TCNGA 2 cut(s) 270, 745
Hpy188III TCNNGA 3 cut(s) 89, 448, 809
Hpy8I GTNNAC 1 cut(s) 799
Hpy99I CGWCG 1 cut(s) 214
HpyAV CCTTC 1 cut(s) 640
HpyCH4III ACNGT 4 cut(s) 203, 823, 973, 997
HpyF3I CTNAG 5 cut(s) 288, 349, 402, 461, 961
Hsp92I GRCGYC 2 cut(s) 245, 282
Hsp92II CATG 6 cut(s) 474, 605, 875, 985, 1014, 1065
HspAI GCGC 4 cut(s) 245, 282, 326, 939
KasI GGCGCC 2 cut(s) 244, 281
Kzo9I GATC 1 cut(s) 270
LmnI GCTCC 3 cut(s) 541, 581, 660
Lsp1109I GCAGC 6 cut(s) 114, 406, 514, 864, 892, 928
LweI GCATC 3 cut(s) 595, 738, 877
MaeI CTAG 4 cut(s) 524, 710, 950, 1004
MalI GATC 1 cut(s) 272
MboI GATC 1 cut(s) 270
MfeI CAATTG 2 cut(s) 546, 1083
MhlI GDGCHC 4 cut(s) 574, 586, 686, 1041
MlsI TGGCCA 2 cut(s) 600, 612
MluCI AATT 5 cut(s) 106, 455, 546, 864, 1083
MluNI TGGCCA 2 cut(s) 600, 612
Mly113I GGCGCC 2 cut(s) 245, 282
MlyI GAGTC 1 cut(s) 435
MmeI TCCRAC 1 cut(s) 559
MnlI CCTC 6 cut(s) 28, 70, 124, 127, 295, 596
Mox20I TGGCCA 2 cut(s) 600, 612
Mph1103I ATGCAT 1 cut(s) 892
MroXI GAANNNNTTC 2 cut(s) 9, 669
MscI TGGCCA 2 cut(s) 600, 612
MseI TTAA 2 cut(s) 51, 1025
Msp20I TGGCCA 2 cut(s) 600, 612
MspA1I CMGCKG 2 cut(s) 374, 419
MspI CCGG 4 cut(s) 197, 217, 477, 861
MspR9I CCNGG 2 cut(s) 218, 614
MunI CAATTG 2 cut(s) 546, 1083
MvaI CCWGG 1 cut(s) 614
NarI GGCGCC 2 cut(s) 245, 282
NciI CCSGG 1 cut(s) 218
NcoI CCATGG 1 cut(s) 981
NdeII GATC 1 cut(s) 270
NlaIII CATG 6 cut(s) 474, 605, 875, 985, 1014, 1065
NlaIV GGNNCC 5 cut(s) 246, 283, 537, 583, 970
NsiI ATGCAT 1 cut(s) 892
NspV TTCGAA 1 cut(s) 673
PcsI WCGNNNNNNNCGW 1 cut(s) 87
PdmI GAANNNNTTC 2 cut(s) 9, 669
PfeI GAWTC 1 cut(s) 250
PflMI CCANNNNNTGG 1 cut(s) 824
PinAI ACCGGT 1 cut(s) 476
PkrI GCNGC 8 cut(s) 129, 148, 376, 421, 529, 879, 882, 943
PleI GAGTC 1 cut(s) 435
PluTI GGCGCC 2 cut(s) 248, 285
PpsI GAGTC 1 cut(s) 435
Psp6I CCWGG 1 cut(s) 612
PspGI CCWGG 1 cut(s) 612
PspN4I GGNNCC 5 cut(s) 246, 283, 537, 583, 970
PspPI GGNCC 6 cut(s) 144, 413, 474, 512, 649, 969
PstI CTGCAG 1 cut(s) 882
PstNI CAGNNNCTG 2 cut(s) 422, 515
PvuII CAGCTG 1 cut(s) 419
RsaI GTAC 3 cut(s) 354, 556, 800
RsaNI GTAC 3 cut(s) 353, 555, 799
SaqAI TTAA 2 cut(s) 51, 1025
SatI GCNGC 8 cut(s) 128, 147, 375, 420, 528, 878, 881, 942
Sau3AI GATC 1 cut(s) 270
Sau96I GGNCC 6 cut(s) 144, 413, 474, 512, 649, 969
SchI GAGTC 1 cut(s) 435
ScrFI CCNGG 2 cut(s) 218, 614
SduI GDGCHC 4 cut(s) 574, 586, 686, 1041
SfaNI GCATC 3 cut(s) 595, 738, 877
SfcI CTRYAG 1 cut(s) 878
SfoI GGCGCC 2 cut(s) 246, 283
SfuI TTCGAA 1 cut(s) 673
SinI GGWCC 4 cut(s) 413, 474, 649, 969
SpeI ACTAGT 1 cut(s) 709
Sse9I AATT 5 cut(s) 106, 455, 546, 864, 1083
SsiI CCGC 3 cut(s) 147, 374, 559
SspDI GGCGCC 2 cut(s) 244, 281
SspMI CTAG 4 cut(s) 524, 710, 950, 1004
StyD4I CCNGG 2 cut(s) 216, 612
StyI CCWWGG 2 cut(s) 768, 981
TaaI ACNGT 4 cut(s) 203, 823, 973, 997
TaqI TCGA 3 cut(s) 90, 212, 673
TasI AATT 5 cut(s) 106, 455, 546, 864, 1083
TatI WGTACW 1 cut(s) 352
TauI GCSGC 2 cut(s) 149, 377
TfiI GAWTC 1 cut(s) 250
Tru1I TTAA 2 cut(s) 51, 1025
Tru9I TTAA 2 cut(s) 51, 1025
TscAI CASTG 1 cut(s) 316
TseI GCWGC 6 cut(s) 127, 419, 527, 877, 880, 941
TspDTI ATGAA 1 cut(s) 15
TspRI CASTG 1 cut(s) 316
Van91I CCANNNNNTGG 1 cut(s) 824
VpaK11BI GGWCC 4 cut(s) 413, 474, 649, 969
XcmI CCANNNNNNNNNTGG 1 cut(s) 620
XmnI GAANNNNTTC 2 cut(s) 9, 669
XspI CTAG 4 cut(s) 524, 710, 950, 1004
Zsp2I ATGCAT 1 cut(s) 892
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.