Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000144.1

Orthogroup ID

OG0009721

Physical Location & Seq

Genomic Coordinates Forward (+)

252684 .. 256312

Gene Structure 3629 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

atggcggtgaagctcgagctctaccggaatcgagccattggatctcattccttaatgcgatgcttcaaggctttccaaagagcaaaacatgagcatgaggcattaaagaggcagtttgaaacttatttccagttaataaagaaattatctaccaaatcacctgatggccctaccaagatgaaaattttggctgcaattgcagaggaacataatgtcaaatgggatcccgaggcatttgaagagaagccacctaaggacctgctgaatgcaagatcatctcatcacttggatgattctgcttctacaaatgtttctgccaacaaagcaaccacatctgccaaatttcatccagaaacgacatcttcagaaaccagaagcagtcgaatggaaatgcatgtaatatttcctggggacgaaagttcttctggtaggcagaatgggaatatgcaatttaaggatgctgcatctgctgcaatatgtgctaactcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Ist1

Protein Analysis

163

Amino Acids

18.25

Weight (kDa)

9.1

Isoelectric Point (pI)

40.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009721)

Species	Orthologous Gene IDs
malus_domestica	MD06G1069200.v1.1 MD16G1146000.v1.1
rosa_laevigata	RLG00000028527
rosa_multiflora	Rmu_sc0000144.1_g000056 Rmu_sc0003321.1_g000024 Rmu_sc0003477.1_g000004
rosa_roxburghii	Rroxscaffold_1G00014870 Rroxscaffold_2G00077870 Rroxscaffold_2G00136480 Rroxscaffold_5G00338630
rosa_rugosa	Rorug06G0120800
rosa_samantha	Rh2BG350900 Rh4DG054200 Rh4DG137300 Rh5AG418200 Rh5DG415400 Rh6AG242000 Rh6CG163000 Rh6DG154700 Rh7AG486300 Rh7DG327500 Rh7DG370400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	267
AciI	CCGC	1 cut(s)	5
AclWI	GGATC	3 cut(s)	49, 218, 231
AcsI	RAATTY	2 cut(s)	183, 341
AcuI	CTGAAG	1 cut(s)	348
AgsI	TTSAA	3 cut(s)	67, 119, 239
AjnI	CCWGG	1 cut(s)	406
AluBI	AGCT	2 cut(s)	13, 19
AluI	AGCT	2 cut(s)	13, 19
Alw21I	GWGCWC	1 cut(s)	21
AlwI	GGATC	3 cut(s)	49, 218, 231
Ama87I	CYCGRG	2 cut(s)	14, 227
AoxI	GGCC	1 cut(s)	166
ApeKI	GCWGC	3 cut(s)	191, 461, 470
ApoI	RAATTY	2 cut(s)	183, 341
AspS9I	GGNCC	2 cut(s)	167, 256
AsuHPI	GGTGA	2 cut(s)	19, 150
AvaI	CYCGRG	2 cut(s)	14, 227
AvaII	GGWCC	1 cut(s)	256
AxyI	CCTNAGG	1 cut(s)	252
BamHI	GGATCC	1 cut(s)	223
BanII	GRGCYC	1 cut(s)	21
Bbv12I	GWGCWC	1 cut(s)	21
BbvI	GCAGC	3 cut(s)	178, 448, 457
BccI	CCATC	1 cut(s)	158
BciT130I	CCWGG	1 cut(s)	408
BfuAI	ACCTGC	1 cut(s)	267
BisI	GCNGC	3 cut(s)	192, 462, 471
BlsI	GCNGC	3 cut(s)	193, 463, 472
Bme1390I	CCNGG	1 cut(s)	408
Bme18I	GGWCC	1 cut(s)	256
BmeT110I	CYCGRG	2 cut(s)	14, 227
BmgT120I	GGNCC	2 cut(s)	167, 256
BmiI	GGNNCC	1 cut(s)	225
BmrFI	CCNGG	1 cut(s)	408
BmsI	GCATC	3 cut(s)	50, 448, 473
BsaJI	CCNNGG	2 cut(s)	228, 407
BsaWI	WCCGGW	1 cut(s)	24
Bse1I	ACTGG	1 cut(s)	130
Bse21I	CCTNAGG	1 cut(s)	252
BseBI	CCWGG	1 cut(s)	408
BseDI	CCNNGG	2 cut(s)	228, 407
BseGI	GGATG	3 cut(s)	295, 346, 463
BseNI	ACTGG	1 cut(s)	130
BseXI	GCAGC	3 cut(s)	178, 448, 457
BshFI	GGCC	1 cut(s)	168
BsiHKAI	GWGCWC	1 cut(s)	21
BsiHKCI	CYCGRG	2 cut(s)	14, 227
BsiSI	CCGG	1 cut(s)	25
BslFI	GGGAC	1 cut(s)	425
BsmFI	GGGAC	1 cut(s)	425
BsmI	GAATGC	1 cut(s)	271
BsnI	GGCC	1 cut(s)	168
BsoBI	CYCGRG	2 cut(s)	14, 227
Bsp1286I	GDGCHC	1 cut(s)	21
Bsp143I	GATC	3 cut(s)	41, 223, 272
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	1 cut(s)	168
BspHI	TCATGA	1 cut(s)	488
BspLI	GGNNCC	1 cut(s)	225
BspMI	ACCTGC	1 cut(s)	267
BspPI	GGATC	3 cut(s)	49, 218, 231
BsrI	ACTGG	1 cut(s)	130
BssECI	CCNNGG	2 cut(s)	228, 407
BssMI	GATC	3 cut(s)	41, 223, 272
Bst2UI	CCWGG	1 cut(s)	408
Bst6I	CTCTTC	1 cut(s)	234
BstAPI	GCANNNNNTGC	2 cut(s)	470, 479
BstDEI	CTNAG	1 cut(s)	252
BstF5I	GGATG	3 cut(s)	295, 346, 463
BstKTI	GATC	3 cut(s)	44, 226, 275
BstMBI	GATC	3 cut(s)	41, 223, 272
BstMWI	GCNNNNNNNGC	5 cut(s)	197, 323, 467, 470, 479
BstNI	CCWGG	1 cut(s)	408
BstNSI	RCATGY	1 cut(s)	398
BstSCI	CCNGG	1 cut(s)	406
BstV1I	GCAGC	3 cut(s)	178, 448, 457
BstX2I	RGATCY	2 cut(s)	41, 223
BstYI	RGATCY	2 cut(s)	41, 223
Bsu36I	CCTNAGG	1 cut(s)	252
BsuRI	GGCC	1 cut(s)	168
BtgZI	GCGATG	1 cut(s)	73
BtsCI	GGATG	3 cut(s)	295, 346, 463
BveI	ACCTGC	1 cut(s)	267
CciI	TCATGA	1 cut(s)	488
Cfr13I	GGNCC	2 cut(s)	167, 256
CviAII	CATG	4 cut(s)	89, 95, 395, 489
CviJI	RGCY	7 cut(s)	13, 19, 35, 71, 168, 191, 247
CviKI_1	RGCY	7 cut(s)	13, 19, 35, 71, 168, 191, 247
DdeI	CTNAG	1 cut(s)	252
DpnI	GATC	3 cut(s)	43, 225, 274
DpnII	GATC	3 cut(s)	41, 223, 272
Eam1104I	CTCTTC	1 cut(s)	234
EarI	CTCTTC	1 cut(s)	234
Ecl136II	GAGCTC	1 cut(s)	19
Eco24I	GRGCYC	1 cut(s)	21
Eco47I	GGWCC	1 cut(s)	256
Eco53kI	GAGCTC	1 cut(s)	19
Eco57I	CTGAAG	1 cut(s)	348
Eco81I	CCTNAGG	1 cut(s)	252
Eco88I	CYCGRG	2 cut(s)	14, 227
EcoICRI	GAGCTC	1 cut(s)	19
EcoO109I	RGGNCCY	1 cut(s)	256
EcoRII	CCWGG	1 cut(s)	406
EcoT22I	ATGCAT	1 cut(s)	396
EcoT38I	GRGCYC	1 cut(s)	21
FaeI	CATG	4 cut(s)	92, 98, 398, 492
FaiI	YATR	7 cut(s)	90, 96, 210, 396, 446, 478, 490
FaqI	GGGAC	1 cut(s)	425
FatI	CATG	4 cut(s)	88, 94, 394, 488
Fnu4HI	GCNGC	3 cut(s)	192, 462, 471
FokI	GGATG	3 cut(s)	302, 333, 470
FriOI	GRGCYC	1 cut(s)	21
Fsp4HI	GCNGC	3 cut(s)	192, 462, 471
GluI	GCNGC	3 cut(s)	192, 462, 471
HaeIII	GGCC	1 cut(s)	168
HapII	CCGG	1 cut(s)	25
Hin1II	CATG	4 cut(s)	92, 98, 398, 492
HinfI	GANTC	2 cut(s)	28, 293
HpaII	CCGG	1 cut(s)	25
HphI	GGTGA	2 cut(s)	19, 150
Hpy188I	TCNGA	1 cut(s)	367
Hpy188III	TCNNGA	3 cut(s)	227, 350, 489
HpyCH4V	TGCA	7 cut(s)	194, 200, 269, 394, 448, 464, 473
HpyF10VI	GCNNNNNNNGC	5 cut(s)	197, 323, 467, 470, 479
HpyF3I	CTNAG	1 cut(s)	252
Hsp92II	CATG	4 cut(s)	92, 98, 398, 492
Kzo9I	GATC	3 cut(s)	41, 223, 272
LpnPI	CCDG	9 cut(s)	38, 143, 174, 272, 363, 385, 393, 411, 420
Lsp1109I	GCAGC	3 cut(s)	178, 448, 457
LweI	GCATC	3 cut(s)	50, 448, 473
MalI	GATC	3 cut(s)	43, 225, 274
MboI	GATC	3 cut(s)	41, 223, 272
MboII	GAAGA	3 cut(s)	251, 354, 414
MfeI	CAATTG	1 cut(s)	195
MflI	RGATCY	2 cut(s)	41, 223
MhlI	GDGCHC	1 cut(s)	21
MluCI	AATT	5 cut(s)	143, 183, 195, 341, 449
MnlI	CCTC	4 cut(s)	91, 102, 196, 223
Mph1103I	ATGCAT	1 cut(s)	396
MseI	TTAA	4 cut(s)	53, 104, 134, 453
MslI	CAYNNNNRTG	2 cut(s)	93, 288
MspI	CCGG	1 cut(s)	25
MspR9I	CCNGG	1 cut(s)	408
MunI	CAATTG	1 cut(s)	195
Mva1269I	GAATGC	1 cut(s)	271
MvaI	CCWGG	1 cut(s)	408
MwoI	GCNNNNNNNGC	5 cut(s)	197, 323, 467, 470, 479
NdeII	GATC	3 cut(s)	41, 223, 272
NlaIII	CATG	4 cut(s)	92, 98, 398, 492
NlaIV	GGNNCC	1 cut(s)	225
NsiI	ATGCAT	1 cut(s)	396
NspI	RCATGY	1 cut(s)	398
PaeR7I	CTCGAG	1 cut(s)	14
PagI	TCATGA	1 cut(s)	488
PctI	GAATGC	1 cut(s)	271
PfeI	GAWTC	2 cut(s)	28, 293
PkrI	GCNGC	3 cut(s)	193, 463, 472
PpuMI	RGGWCCY	1 cut(s)	256
Psp124BI	GAGCTC	1 cut(s)	21
Psp5II	RGGWCCY	1 cut(s)	256
Psp6I	CCWGG	1 cut(s)	406
PspGI	CCWGG	1 cut(s)	406
PspN4I	GGNNCC	1 cut(s)	225
PspPI	GGNCC	2 cut(s)	167, 256
PspPPI	RGGWCCY	1 cut(s)	256
PspXI	VCTCGAGB	1 cut(s)	14
PsuI	RGATCY	2 cut(s)	41, 223
RseI	CAYNNNNRTG	2 cut(s)	93, 288
SacI	GAGCTC	1 cut(s)	21
SaqAI	TTAA	4 cut(s)	53, 104, 134, 453
SatI	GCNGC	3 cut(s)	192, 462, 471
Sau3AI	GATC	3 cut(s)	41, 223, 272
Sau96I	GGNCC	2 cut(s)	167, 256
ScrFI	CCNGG	1 cut(s)	408
SduI	GDGCHC	1 cut(s)	21
SetI	ASST	5 cut(s)	15, 21, 163, 253, 261
SfaNI	GCATC	3 cut(s)	50, 448, 473
Sfr274I	CTCGAG	1 cut(s)	14
SinI	GGWCC	1 cut(s)	256
SlaI	CTCGAG	1 cut(s)	14
SmiMI	CAYNNNNRTG	2 cut(s)	93, 288
SmlI	CTYRAG	1 cut(s)	14
SmoI	CTYRAG	1 cut(s)	14
Sse9I	AATT	5 cut(s)	143, 183, 195, 341, 449
SsiI	CCGC	1 cut(s)	5
SspI	AATATT	1 cut(s)	402
SstI	GAGCTC	1 cut(s)	21
StyD4I	CCNGG	1 cut(s)	406
TaqI	TCGA	3 cut(s)	15, 31, 382
TasI	AATT	5 cut(s)	143, 183, 195, 341, 449
TfiI	GAWTC	2 cut(s)	28, 293
Tru1I	TTAA	4 cut(s)	53, 104, 134, 453
Tru9I	TTAA	4 cut(s)	53, 104, 134, 453
TseI	GCWGC	3 cut(s)	191, 461, 470
TspDTI	ATGAA	2 cut(s)	194, 335
VpaK11BI	GGWCC	1 cut(s)	256
XapI	RAATTY	2 cut(s)	183, 341
XceI	RCATGY	1 cut(s)	398
XhoI	CTCGAG	1 cut(s)	14
Zsp2I	ATGCAT	1 cut(s)	396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.