Rmu_sc0000210.1_g000014

salt tolerance-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000210.1
OG0015021
Physical Location & Seq
Forward (+)
67464 .. 69544
2081 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1062 bp
atgaagatacagtgtaacgtgtgcgagacggcggaggcgaacgtgctctgctgcgccgacgaggcggcgctctgctgggcctgcgacgagaaggtccacgccgccaacaagctcgccagcaagcaccagagggttcctctctccgcctcccacatgcccaagtgcgatatctgccaggaggcggttgggtattttttctgtttggaggatagagctctgctgtgtaggaactgtgatgttgcagtacatactgcgaatagttttgtttccggtcaccggaggtttttgctgaccggaattaaagttgggccggagtccagtccacctgggcctggtggtggtggtggtggtggtgttgctgggtcgtcttcttctgtcaaaccggactctggggctgcgtcgaaatgtgaagcaaacattcaattggcggaggaatgcaaagtggcgccgtcaagtgttgctgggatgtcttttgctggtggttcggcagctgggtctggtccacagtggcctatggatgagtttctgggattcactgatttcgatcagagctttgggtacatggataatggatcgtctaaggctgactgcggtaaacttggggcttctgattcatcaattttaagatcatctgaggaggagcaagagggatacgagtgcataggtcaggtgccagagatctcttggatggtgccagaggtaccttccccgcctacatcctcggggctatactggcctaaaacttatcagaacccatcggattctgcagtgtttgttccagacgctgactgcggtaaacttggggcttctgattcatcaattttaagatcatctgaggaggagcaagagggatacgagtgcataggtcaggtgccagagatctcttggatggtgccagaggtaccttccccgcctacatcctcggggctatactggcctaaaacttatcagaacccatcggattctgcagtgtttgttccagacgtttgctattcagaaatggaaaatcctcttcactgtcaacagaatggtactgtctcaaaacgtcgtaggcaattctaa

Protein Analysis

353

Amino Acids

37.53

Weight (kDa)

4.64

Isoelectric Point (pI)

66.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-B_box PF00643 52 - 93 2.9e-07 B-box zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015021)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G10240
fragaria_vesca FvH4_3g17750
malus_domestica MD03G1247700.v1.1 MD11G1269800.v1.1
prunus_persica Prupe.4G156600_v2.0.a1
pyrus_communis pycom03g19640 pycom11g23830
rosa_chinensis RchiOBHm_Chr5g0029541
rosa_laevigata RLG00000033177
rosa_multiflora Rmu_sc0000210.1_g000014
rosa_roxburghii Rroxscaffold_1G00050400
rosa_samantha Rh5AG206900 Rh5BG205600 Rh5CG227700 Rh5DG209300
rosa_wichuraiana Rw5G018820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 92
Acc65I GGTACC 2 cut(s) 700, 901
AccB1I GGYRCC 7 cut(s) 445, 670, 691, 700, 871, 892, 901
AclWI GGATC 1 cut(s) 580
AcyI GRCGYC 1 cut(s) 446
AfaI GTAC 5 cut(s) 246, 560, 702, 903, 1033
AfiI CCNNNNNNNGG 5 cut(s) 181, 276, 332, 338, 389
AflIII ACRYGT 1 cut(s) 18
AgsI TTSAA 1 cut(s) 422
AjnI CCWGG 3 cut(s) 174, 325, 331
AluBI AGCT 4 cut(s) 112, 215, 491, 552
AluI AGCT 4 cut(s) 112, 215, 491, 552
Alw21I GWGCWC 2 cut(s) 48, 217
Alw26I GTCTC 2 cut(s) 20, 1042
AlwI GGATC 1 cut(s) 580
AlwNI CAGNNNCTG 1 cut(s) 785
Ama87I CYCGRG 2 cut(s) 721, 922
AoxI GGCC 6 cut(s) 78, 308, 329, 509, 734, 935
ApeKI GCWGC 3 cut(s) 51, 395, 488
Asp718I GGTACC 2 cut(s) 700, 901
AspLEI GCGC 3 cut(s) 56, 70, 448
AspS9I GGNCC 5 cut(s) 78, 94, 308, 329, 500
AsuHPI GGTGA 1 cut(s) 266
AvaI CYCGRG 2 cut(s) 721, 922
AvaII GGWCC 2 cut(s) 94, 500
BanI GGYRCC 7 cut(s) 445, 670, 691, 700, 871, 892, 901
BanII GRGCYC 1 cut(s) 217
BbsI GAAGAC 1 cut(s) 360
Bbv12I GWGCWC 2 cut(s) 48, 217
BbvI GCAGC 3 cut(s) 38, 382, 500
BccI CCATC 4 cut(s) 682, 763, 883, 964
BceAI ACGGC 2 cut(s) 45, 433
BciT130I CCWGG 3 cut(s) 176, 327, 333
BciVI GTATCC 2 cut(s) 644, 845
BcoDI GTCTC 2 cut(s) 20, 1042
BfmI CTRYAG 2 cut(s) 765, 966
BfoI RGCGCY 2 cut(s) 71, 449
BfuI GTATCC 2 cut(s) 644, 845
BglI GCCNNNNNGGC 1 cut(s) 62
BglII AGATCT 2 cut(s) 678, 879
BisI GCNGC 5 cut(s) 52, 66, 102, 396, 489
BlsI GCNGC 5 cut(s) 53, 67, 103, 397, 490
Bme1390I CCNGG 3 cut(s) 176, 327, 333
Bme18I GGWCC 2 cut(s) 94, 500
BmeT110I CYCGRG 2 cut(s) 721, 922
BmgT120I GGNCC 5 cut(s) 78, 94, 308, 329, 500
BmiI GGNNCC 8 cut(s) 135, 447, 672, 693, 702, 873, 894, 903
BmrFI CCNGG 3 cut(s) 176, 327, 333
BpiI GAAGAC 1 cut(s) 360
BplI GAGNNNNNCTC 2 cut(s) 121, 153
BsaBI GATNNNNATC 1 cut(s) 543
BsaHI GRCGYC 1 cut(s) 446
BsaJI CCNNGG 3 cut(s) 326, 720, 921
BsaWI WCCGGW 4 cut(s) 269, 276, 293, 382
Bsc4I CCNNNNNNNGG 5 cut(s) 181, 276, 332, 338, 389
Bse1I ACTGG 3 cut(s) 318, 737, 938
Bse8I GATNNNNATC 1 cut(s) 543
BseBI CCWGG 3 cut(s) 176, 327, 333
BseDI CCNNGG 3 cut(s) 326, 720, 921
BseGI GGATG 6 cut(s) 471, 523, 693, 716, 894, 917
BseJI GATNNNNATC 1 cut(s) 543
BseLI CCNNNNNNNGG 5 cut(s) 181, 276, 332, 338, 389
BseMII CTCAG 2 cut(s) 624, 825
BseNI ACTGG 3 cut(s) 318, 737, 938
BseRI GAGGAG 4 cut(s) 650, 653, 851, 854
BseXI GCAGC 3 cut(s) 38, 382, 500
BseYI CCCAGC 4 cut(s) 75, 359, 461, 491
BshFI GGCC 6 cut(s) 80, 310, 331, 511, 736, 937
BshNI GGYRCC 7 cut(s) 445, 670, 691, 700, 871, 892, 901
BsiHKAI GWGCWC 2 cut(s) 48, 217
BsiHKCI CYCGRG 2 cut(s) 721, 922
BsiSI CCGG 5 cut(s) 270, 277, 294, 311, 383
BslI CCNNNNNNNGG 5 cut(s) 181, 276, 332, 338, 389
BsmAI GTCTC 2 cut(s) 20, 1042
BsmBI CGTCTC 1 cut(s) 20
BsmI GAATGC 1 cut(s) 440
BsnI GGCC 6 cut(s) 80, 310, 331, 511, 736, 937
BsoBI CYCGRG 2 cut(s) 721, 922
Bsp1286I GDGCHC 2 cut(s) 48, 217
Bsp143I GATC 6 cut(s) 544, 572, 626, 678, 827, 879
BspANI GGCC 6 cut(s) 80, 310, 331, 511, 736, 937
BspCNI CTCAG 2 cut(s) 625, 826
BspLI GGNNCC 8 cut(s) 135, 447, 672, 693, 702, 873, 894, 903
BspMAI CTGCAG 2 cut(s) 769, 970
BspPI GGATC 1 cut(s) 580
BspT107I GGYRCC 7 cut(s) 445, 670, 691, 700, 871, 892, 901
BsrI ACTGG 3 cut(s) 318, 737, 938
BssECI CCNNGG 3 cut(s) 326, 720, 921
BssMI GATC 6 cut(s) 544, 572, 626, 678, 827, 879
BssNI GRCGYC 1 cut(s) 446
Bst2UI CCWGG 3 cut(s) 176, 327, 333
Bst4CI ACNGT 5 cut(s) 12, 233, 507, 1019, 1036
Bst6I CTCTTC 1 cut(s) 1017
BstACI GRCGYC 1 cut(s) 446
BstC8I GCNNGC 4 cut(s) 82, 114, 118, 122
BstDEI CTNAG 3 cut(s) 579, 633, 834
BstEII GGTNACC 1 cut(s) 272
BstF5I GGATG 6 cut(s) 471, 523, 693, 716, 894, 917
BstH2I RGCGCY 2 cut(s) 71, 449
BstHHI GCGC 3 cut(s) 56, 70, 448
BstKTI GATC 6 cut(s) 547, 575, 629, 681, 830, 882
BstMAI GTCTC 2 cut(s) 20, 1042
BstMBI GATC 6 cut(s) 544, 572, 626, 678, 827, 879
BstMWI GCNNNNNNNGC 5 cut(s) 62, 81, 171, 733, 934
BstNI CCWGG 3 cut(s) 176, 327, 333
BstNSI RCATGY 1 cut(s) 157
BstPI GGTNACC 1 cut(s) 272
BstSCI CCNGG 3 cut(s) 174, 325, 331
BstSFI CTRYAG 2 cut(s) 765, 966
BstV1I GCAGC 3 cut(s) 38, 382, 500
BstV2I GAAGAC 1 cut(s) 360
BstX2I RGATCY 2 cut(s) 678, 879
BstYI RGATCY 2 cut(s) 678, 879
BsuI GTATCC 2 cut(s) 644, 845
BsuRI GGCC 6 cut(s) 80, 310, 331, 511, 736, 937
BtsCI GGATG 6 cut(s) 471, 523, 693, 716, 894, 917
BtsI GCAGTG 2 cut(s) 774, 975
BtsIMutI CAGTG 6 cut(s) 17, 512, 534, 774, 975, 1015
Cac8I GCNNGC 4 cut(s) 82, 114, 118, 122
CaiI CAGNNNCTG 1 cut(s) 785
CfoI GCGC 3 cut(s) 56, 70, 448
Cfr13I GGNCC 5 cut(s) 78, 94, 308, 329, 500
CseI GACGC 2 cut(s) 387, 791
Csp6I GTAC 5 cut(s) 245, 559, 701, 902, 1032
CviAII CATG 2 cut(s) 154, 562
CviQI GTAC 5 cut(s) 245, 559, 701, 902, 1032
DdeI CTNAG 3 cut(s) 579, 633, 834
DinI GGCGCC 1 cut(s) 447
DpnI GATC 6 cut(s) 546, 574, 628, 680, 829, 881
DpnII GATC 6 cut(s) 544, 572, 626, 678, 827, 879
DrdI GACNNNNNNGTC 1 cut(s) 92
DseDI GACNNNNNNGTC 1 cut(s) 92
Eam1104I CTCTTC 1 cut(s) 1017
EarI CTCTTC 1 cut(s) 1017
EciI GGCGGA 3 cut(s) 47, 133, 443
Ecl136II GAGCTC 1 cut(s) 215
Eco24I GRGCYC 1 cut(s) 217
Eco32I GATATC 1 cut(s) 169
Eco47I GGWCC 2 cut(s) 94, 500
Eco53kI GAGCTC 1 cut(s) 215
Eco88I CYCGRG 2 cut(s) 721, 922
Eco91I GGTNACC 1 cut(s) 272
EcoICRI GAGCTC 1 cut(s) 215
EcoO65I GGTNACC 1 cut(s) 272
EcoRII CCWGG 3 cut(s) 174, 325, 331
EcoRV GATATC 1 cut(s) 169
EcoT38I GRGCYC 1 cut(s) 217
EgeI GGCGCC 1 cut(s) 447
EheI GGCGCC 1 cut(s) 447
Esp3I CGTCTC 1 cut(s) 20
FaeI CATG 2 cut(s) 157, 565
FaiI YATR 8 cut(s) 155, 249, 515, 563, 662, 730, 863, 931
FatI CATG 2 cut(s) 153, 561
FauI CCCGC 2 cut(s) 717, 918
Fnu4HI GCNGC 5 cut(s) 52, 66, 102, 396, 489
FokI GGATG 6 cut(s) 478, 530, 700, 703, 901, 904
FriOI GRGCYC 1 cut(s) 217
Fsp4HI GCNGC 5 cut(s) 52, 66, 102, 396, 489
GlaI GCGC 3 cut(s) 55, 69, 447
GluI GCNGC 5 cut(s) 52, 66, 102, 396, 489
GsaI CCCAGC 4 cut(s) 79, 363, 465, 495
HaeII RGCGCY 2 cut(s) 71, 449
HaeIII GGCC 6 cut(s) 80, 310, 331, 511, 736, 937
HapII CCGG 5 cut(s) 270, 277, 294, 311, 383
HgaI GACGC 2 cut(s) 387, 791
HhaI GCGC 3 cut(s) 56, 70, 448
Hin1I GRCGYC 1 cut(s) 446
Hin1II CATG 2 cut(s) 157, 565
Hin6I GCGC 3 cut(s) 54, 68, 446
HinP1I GCGC 3 cut(s) 54, 68, 446
HincII GTYRAC 1 cut(s) 1022
HindII GTYRAC 1 cut(s) 1022
HinfI GANTC 7 cut(s) 314, 386, 531, 611, 761, 812, 962
HpaII CCGG 5 cut(s) 270, 277, 294, 311, 383
HphI GGTGA 1 cut(s) 266
Hpy166II GTNNAC 6 cut(s) 97, 323, 503, 596, 797, 1022
Hpy188III TCNNGA 2 cut(s) 779, 980
Hpy8I GTNNAC 6 cut(s) 97, 323, 503, 596, 797, 1022
Hpy99I CGWCG 4 cut(s) 62, 89, 403, 1050
HpyAV CCTTC 3 cut(s) 85, 714, 915
HpyCH4III ACNGT 5 cut(s) 12, 233, 507, 1019, 1036
HpyCH4IV ACGT 4 cut(s) 18, 42, 984, 1045
HpyCH4V TGCA 6 cut(s) 242, 438, 660, 767, 861, 968
HpyF10VI GCNNNNNNNGC 5 cut(s) 62, 81, 171, 733, 934
HpyF3I CTNAG 3 cut(s) 579, 633, 834
HpySE526I ACGT 4 cut(s) 18, 42, 984, 1045
Hsp92I GRCGYC 1 cut(s) 446
Hsp92II CATG 2 cut(s) 157, 565
HspAI GCGC 3 cut(s) 54, 68, 446
KasI GGCGCC 1 cut(s) 445
KpnI GGTACC 2 cut(s) 704, 905
Kzo9I GATC 6 cut(s) 544, 572, 626, 678, 827, 879
LmnI GCTCC 2 cut(s) 640, 841
Lsp1109I GCAGC 3 cut(s) 38, 382, 500
MaeII ACGT 4 cut(s) 18, 42, 984, 1045
MaeIII GTNAC 2 cut(s) 14, 272
MalI GATC 6 cut(s) 546, 574, 628, 680, 829, 881
MboI GATC 6 cut(s) 544, 572, 626, 678, 827, 879
MboII GAAGA 4 cut(s) 16, 360, 363, 1004
MfeI CAATTG 1 cut(s) 422
MflI RGATCY 2 cut(s) 678, 879
MhlI GDGCHC 2 cut(s) 48, 217
MluCI AATT 5 cut(s) 297, 422, 618, 819, 1055
Mly113I GGCGCC 1 cut(s) 446
MlyI GAGTC 2 cut(s) 323, 380
MseI TTAA 3 cut(s) 300, 623, 824
MspA1I CMGCKG 1 cut(s) 491
MspI CCGG 5 cut(s) 270, 277, 294, 311, 383
MspR9I CCNGG 3 cut(s) 176, 327, 333
MunI CAATTG 1 cut(s) 422
Mva1269I GAATGC 1 cut(s) 440
MvaI CCWGG 3 cut(s) 176, 327, 333
MwoI GCNNNNNNNGC 5 cut(s) 62, 81, 171, 733, 934
NarI GGCGCC 1 cut(s) 446
NdeII GATC 6 cut(s) 544, 572, 626, 678, 827, 879
NlaIII CATG 2 cut(s) 157, 565
NlaIV GGNNCC 8 cut(s) 135, 447, 672, 693, 702, 873, 894, 903
NmuCI GTSAC 1 cut(s) 272
NspI RCATGY 1 cut(s) 157
PcsI WCGNNNNNNNCGW 1 cut(s) 35
PctI GAATGC 1 cut(s) 440
PfeI GAWTC 5 cut(s) 531, 611, 761, 812, 962
PkrI GCNGC 5 cut(s) 53, 67, 103, 397, 490
PleI GAGTC 2 cut(s) 322, 380
PluTI GGCGCC 1 cut(s) 449
PpsI GAGTC 2 cut(s) 322, 380
Psp124BI GAGCTC 1 cut(s) 217
Psp6I CCWGG 3 cut(s) 174, 325, 331
PspEI GGTNACC 1 cut(s) 272
PspFI CCCAGC 4 cut(s) 75, 359, 461, 491
PspGI CCWGG 3 cut(s) 174, 325, 331
PspN4I GGNNCC 8 cut(s) 135, 447, 672, 693, 702, 873, 894, 903
PspPI GGNCC 5 cut(s) 78, 94, 308, 329, 500
PstI CTGCAG 2 cut(s) 769, 970
PstNI CAGNNNCTG 1 cut(s) 785
PsuI RGATCY 2 cut(s) 678, 879
PvuII CAGCTG 1 cut(s) 491
RsaI GTAC 5 cut(s) 246, 560, 702, 903, 1033
RsaNI GTAC 5 cut(s) 245, 559, 701, 902, 1032
SacI GAGCTC 1 cut(s) 217
SaqAI TTAA 3 cut(s) 300, 623, 824
SatI GCNGC 5 cut(s) 52, 66, 102, 396, 489
Sau3AI GATC 6 cut(s) 544, 572, 626, 678, 827, 879
Sau96I GGNCC 5 cut(s) 78, 94, 308, 329, 500
SchI GAGTC 2 cut(s) 323, 380
ScrFI CCNGG 3 cut(s) 176, 327, 333
SduI GDGCHC 2 cut(s) 48, 217
SfcI CTRYAG 2 cut(s) 765, 966
SfoI GGCGCC 1 cut(s) 447
SinI GGWCC 2 cut(s) 94, 500
Sse9I AATT 5 cut(s) 297, 422, 618, 819, 1055
SspDI GGCGCC 1 cut(s) 445
SstI GAGCTC 1 cut(s) 217
StyD4I CCNGG 3 cut(s) 174, 325, 331
TaaI ACNGT 5 cut(s) 12, 233, 507, 1019, 1036
TaiI ACGT 4 cut(s) 21, 45, 987, 1048
TaqI TCGA 2 cut(s) 401, 543
TasI AATT 5 cut(s) 297, 422, 618, 819, 1055
TatI WGTACW 1 cut(s) 244
TauI GCSGC 2 cut(s) 68, 104
TfiI GAWTC 5 cut(s) 531, 611, 761, 812, 962
Tru1I TTAA 3 cut(s) 300, 623, 824
Tru9I TTAA 3 cut(s) 300, 623, 824
TscAI CASTG 6 cut(s) 17, 512, 541, 774, 975, 1022
TseFI GTSAC 1 cut(s) 272
TseI GCWGC 3 cut(s) 51, 395, 488
Tsp45I GTSAC 1 cut(s) 272
TspDTI ATGAA 3 cut(s) 17, 603, 804
TspRI CASTG 6 cut(s) 17, 512, 541, 774, 975, 1022
VpaK11BI GGWCC 2 cut(s) 94, 500
XceI RCATGY 1 cut(s) 157
XcmI CCANNNNNNNNNTGG 3 cut(s) 182, 681, 882
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.