Rmu_sc0000236.1_g000011

Flowering time control protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000236.1
OG0002760
Physical Location & Seq
Forward (+)
27329 .. 29201
1873 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1137 bp
atgccccacaatgccatgattttgtttggtgagattgagaagattaaaagttttccttcaaggcactactcatttgtcaaattcaggagtgtagacgaagcttggcgtgccaaggagggtttgcaaggcaggcttttcaaagatcctcggatcacaattatgttttcaactagtgatctgccaccagctagcccataccaaccgggaggaggcgaatggtctactcctagacttgatatgcaactatttaatggacattcaatgagcaacttagggcctggagctctaccacaaagtccaagtggtaattttcttagaccaaatgacgttctaatgaggcctttaggtcctctgcctcctggtagatttgatgatctgctttattatcaagatggcagttccaggaagagccaccttagtccacctggtgtcaggggcatagttggaggtcctaggcctcctgatgatgattacatctggcgtggcattattgccaagggtggaacagccatttgtcgtgctcgttgtgtccttgtaggcaaagggataagaattgagattgtagatgaatttgcttcctacactgaattccttcattatctaggtgcgaaaaaccgtgctggtgttgcaaagtttgatgatgggatgacattgtttttagtacctccttcagacttcttgaagactgttttgaaagttgctggccctgaacgtctgtatggtgtggttctcaagtttccacaacaagttcctagtgctgcttccattcagcaaccatcacatctacccattgaatcttcacaatatatagataaacagcagattcctcctatacatgctgagtataccattccatcgaaggatgaacatgtatcacaggctggagttcctttattaacacctgaacttattggctctctggcgactttactgcctggaaatgcacagccgtctttgccagaaagttcgaagctatcggcatgggaaacaagatcagcagttaggccctcatttcctggatggaaacaagatcaacaaatttctgatctaagaacagagtcttccacagtaccagcctacttatccatccggtacaaacacatcaagttaccactctggtccactggtgcttggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0000785 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006325 GO:0006342 GO:0006355 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009553 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009911 GO:0009987 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0019219 GO:0019222 GO:0022414 GO:0031047 GO:0031048 GO:0031123 GO:0031124 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0034641 GO:0040029 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048229 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000243 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1 SPOC

Protein Analysis

378

Amino Acids

41.75

Weight (kDa)

9.15

Isoelectric Point (pI)

53.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPOC PF07744 189 - 245 2.5e-09 SPOC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 93, 221, 845
AclWI GGATC 2 cut(s) 137, 158
AcsI RAATTY 4 cut(s) 80, 569, 587, 1038
AcuI CTGAAG 1 cut(s) 654
AdeI CACNNNGTG 1 cut(s) 428
AfaI GTAC 3 cut(s) 663, 1071, 1094
AfiI CCNNNNNNNGG 1 cut(s) 209
AflIII ACRYGT 1 cut(s) 868
AgsI TTSAA 7 cut(s) 60, 139, 168, 261, 682, 694, 794
AhlI ACTAGT 1 cut(s) 170
AjnI CCWGG 6 cut(s) 277, 358, 401, 424, 934, 1015
AluBI AGCT 4 cut(s) 101, 188, 284, 973
AluI AGCT 4 cut(s) 101, 188, 284, 973
Alw21I GWGCWC 2 cut(s) 286, 523
AlwI GGATC 2 cut(s) 137, 158
AoxI GGCC 5 cut(s) 275, 338, 455, 703, 1004
ApeKI GCWGC 1 cut(s) 758
ApoI RAATTY 4 cut(s) 80, 569, 587, 1038
Asp700I GAANNNNTTC 1 cut(s) 591
AspA2I CCTAGG 1 cut(s) 452
AspS9I GGNCC 6 cut(s) 275, 347, 449, 704, 1005, 1119
AsuC2I CCSGG 1 cut(s) 204
AsuHPI GGTGA 1 cut(s) 41
AsuII TTCGAA 1 cut(s) 968
AsuNHI GCTAGC 1 cut(s) 188
AvaII GGWCC 3 cut(s) 347, 449, 1119
AvrII CCTAGG 1 cut(s) 452
BanII GRGCYC 1 cut(s) 286
BbsI GAAGAC 2 cut(s) 689, 1053
Bbv12I GWGCWC 2 cut(s) 286, 523
BbvI GCAGC 1 cut(s) 745
BccI CCATC 6 cut(s) 386, 635, 784, 862, 1014, 1094
BceAI ACGGC 1 cut(s) 934
BcgI CGANNNNNNTGC 2 cut(s) 913, 947
BciT130I CCWGG 6 cut(s) 279, 360, 403, 426, 936, 1017
BcnI CCSGG 1 cut(s) 204
BcuI ACTAGT 1 cut(s) 170
BfaI CTAG 6 cut(s) 171, 189, 228, 453, 602, 753
BisI GCNGC 1 cut(s) 759
BlnI CCTAGG 1 cut(s) 452
BlsI GCNGC 1 cut(s) 760
Bme1390I CCNGG 7 cut(s) 204, 279, 360, 403, 426, 936, 1017
Bme18I GGWCC 3 cut(s) 347, 449, 1119
BmgT120I GGNCC 6 cut(s) 275, 347, 449, 704, 1005, 1119
BmrFI CCNGG 7 cut(s) 204, 279, 360, 403, 426, 936, 1017
BmtI GCTAGC 1 cut(s) 192
BpiI GAAGAC 2 cut(s) 689, 1053
BpmI CTGGAG 2 cut(s) 300, 903
Bpu14I TTCGAA 1 cut(s) 968
BpuEI CTTGAG 1 cut(s) 716
BpuMI CCSGG 1 cut(s) 204
BsaJI CCNNGG 4 cut(s) 111, 146, 452, 495
BsaWI WCCGGW 1 cut(s) 1089
Bsc4I CCNNNNNNNGG 1 cut(s) 209
Bse1I ACTGG 1 cut(s) 1129
BseBI CCWGG 6 cut(s) 279, 360, 403, 426, 936, 1017
BseDI CCNNGG 4 cut(s) 111, 146, 452, 495
BseGI GGATG 4 cut(s) 651, 868, 1025, 1086
BseLI CCNNNNNNNGG 1 cut(s) 209
BseMII CTCAG 1 cut(s) 831
BseNI ACTGG 1 cut(s) 1129
BseRI GAGGAG 1 cut(s) 222
BseXI GCAGC 1 cut(s) 745
BshFI GGCC 5 cut(s) 277, 340, 457, 705, 1006
BsiHKAI GWGCWC 2 cut(s) 286, 523
BsiSI CCGG 2 cut(s) 203, 1090
BslI CCNNNNNNNGG 1 cut(s) 209
BsnI GGCC 5 cut(s) 277, 340, 457, 705, 1006
Bsp119I TTCGAA 1 cut(s) 968
Bsp1286I GDGCHC 2 cut(s) 286, 523
Bsp143I GATC 7 cut(s) 142, 150, 175, 373, 992, 1030, 1045
BspANI GGCC 5 cut(s) 277, 340, 457, 705, 1006
BspCNI CTCAG 1 cut(s) 832
BspOI GCTAGC 1 cut(s) 192
BspPI GGATC 2 cut(s) 137, 158
BspQI GCTCTTC 1 cut(s) 401
BspT104I TTCGAA 1 cut(s) 968
BsrI ACTGG 1 cut(s) 1129
BssECI CCNNGG 4 cut(s) 111, 146, 452, 495
BssMI GATC 7 cut(s) 142, 150, 175, 373, 992, 1030, 1045
BssNAI GTATAC 1 cut(s) 846
BssT1I CCWWGG 3 cut(s) 111, 452, 495
Bst1107I GTATAC 1 cut(s) 846
Bst2UI CCWGG 6 cut(s) 279, 360, 403, 426, 936, 1017
Bst4CI ACNGT 3 cut(s) 617, 688, 1069
Bst6I CTCTTC 1 cut(s) 401
BstBI TTCGAA 1 cut(s) 968
BstC8I GCNNGC 4 cut(s) 108, 131, 190, 703
BstDEI CTNAG 5 cut(s) 271, 314, 416, 840, 1049
BstF5I GGATG 4 cut(s) 651, 868, 1025, 1086
BstKTI GATC 7 cut(s) 145, 153, 178, 376, 995, 1033, 1048
BstMBI GATC 7 cut(s) 142, 150, 175, 373, 992, 1030, 1045
BstMWI GCNNNNNNNGC 4 cut(s) 107, 130, 626, 955
BstNI CCWGG 6 cut(s) 279, 360, 403, 426, 936, 1017
BstNSI RCATGY 2 cut(s) 839, 872
BstSCI CCNGG 7 cut(s) 202, 277, 358, 401, 424, 934, 1015
BstV1I GCAGC 1 cut(s) 745
BstV2I GAAGAC 2 cut(s) 689, 1053
BstX2I RGATCY 1 cut(s) 142
BstYI RGATCY 1 cut(s) 142
BstZ17I GTATAC 1 cut(s) 846
BsuRI GGCC 5 cut(s) 277, 340, 457, 705, 1006
BtsCI GGATG 4 cut(s) 651, 868, 1025, 1086
BtsIMutI CAGTG 2 cut(s) 582, 1122
Cac8I GCNNGC 4 cut(s) 108, 131, 190, 703
Cfr13I GGNCC 6 cut(s) 275, 347, 449, 704, 1005, 1119
CsiI ACCWGGT 1 cut(s) 424
Csp6I GTAC 3 cut(s) 662, 1070, 1093
CviAII CATG 4 cut(s) 16, 836, 869, 981
CviQI GTAC 3 cut(s) 662, 1070, 1093
DdeI CTNAG 5 cut(s) 271, 314, 416, 840, 1049
DpnI GATC 7 cut(s) 144, 152, 177, 375, 994, 1032, 1047
DpnII GATC 7 cut(s) 142, 150, 175, 373, 992, 1030, 1045
DraIII CACNNNGTG 1 cut(s) 428
Eam1104I CTCTTC 1 cut(s) 401
EarI CTCTTC 1 cut(s) 401
Ecl136II GAGCTC 1 cut(s) 284
Eco130I CCWWGG 3 cut(s) 111, 452, 495
Eco147I AGGCCT 2 cut(s) 340, 457
Eco24I GRGCYC 1 cut(s) 286
Eco47I GGWCC 3 cut(s) 347, 449, 1119
Eco53kI GAGCTC 1 cut(s) 284
Eco57I CTGAAG 1 cut(s) 654
EcoICRI GAGCTC 1 cut(s) 284
EcoO109I RGGNCCY 4 cut(s) 275, 347, 449, 1005
EcoRI GAATTC 1 cut(s) 587
EcoRII CCWGG 6 cut(s) 277, 358, 401, 424, 934, 1015
EcoT14I CCWWGG 3 cut(s) 111, 452, 495
EcoT38I GRGCYC 1 cut(s) 286
ErhI CCWWGG 3 cut(s) 111, 452, 495
FaeI CATG 4 cut(s) 19, 839, 872, 984
FalI AAGNNNNNCTT 4 cut(s) 40, 72, 117, 149
FatI CATG 4 cut(s) 15, 835, 868, 980
FblI GTMKAC 3 cut(s) 93, 221, 845
Fnu4HI GCNGC 1 cut(s) 759
FokI GGATG 4 cut(s) 658, 875, 1032, 1073
FriOI GRGCYC 1 cut(s) 286
Fsp4HI GCNGC 1 cut(s) 759
FspBI CTAG 6 cut(s) 171, 189, 228, 453, 602, 753
GluI GCNGC 1 cut(s) 759
GsuI CTGGAG 2 cut(s) 300, 903
HaeIII GGCC 5 cut(s) 277, 340, 457, 705, 1006
HapII CCGG 2 cut(s) 203, 1090
Hin1II CATG 4 cut(s) 19, 839, 872, 984
HindIII AAGCTT 1 cut(s) 99
HinfI GANTC 3 cut(s) 794, 823, 1058
HpaII CCGG 2 cut(s) 203, 1090
HphI GGTGA 1 cut(s) 41
Hpy166II GTNNAC 5 cut(s) 94, 222, 422, 846, 1122
Hpy188I TCNGA 3 cut(s) 150, 673, 1045
Hpy188III TCNNGA 4 cut(s) 85, 389, 461, 679
Hpy8I GTNNAC 5 cut(s) 94, 222, 422, 846, 1122
HpyAV CCTTC 4 cut(s) 66, 602, 678, 853
HpyCH4III ACNGT 3 cut(s) 617, 688, 1069
HpyCH4IV ACGT 2 cut(s) 327, 712
HpyCH4V TGCA 4 cut(s) 124, 241, 629, 944
HpyF10VI GCNNNNNNNGC 4 cut(s) 107, 130, 626, 955
HpyF3I CTNAG 5 cut(s) 271, 314, 416, 840, 1049
HpySE526I ACGT 2 cut(s) 327, 712
Hsp92II CATG 4 cut(s) 19, 839, 872, 984
Kzo9I GATC 7 cut(s) 142, 150, 175, 373, 992, 1030, 1045
LguI GCTCTTC 1 cut(s) 401
LmnI GCTCC 1 cut(s) 281
Lsp1109I GCAGC 1 cut(s) 745
MabI ACCWGGT 1 cut(s) 424
MaeI CTAG 6 cut(s) 171, 189, 228, 453, 602, 753
MaeII ACGT 2 cut(s) 327, 712
MaeIII GTNAC 1 cut(s) 1107
MalI GATC 7 cut(s) 144, 152, 177, 375, 994, 1032, 1047
MboI GATC 7 cut(s) 142, 150, 175, 373, 992, 1030, 1045
MboII GAAGA 5 cut(s) 52, 418, 694, 789, 1053
MflI RGATCY 1 cut(s) 142
MhlI GDGCHC 2 cut(s) 286, 523
MluCI AATT 7 cut(s) 80, 156, 307, 552, 569, 587, 1038
MlyI GAGTC 1 cut(s) 1067
MmeI TCCRAC 1 cut(s) 424
MroXI GAANNNNTTC 1 cut(s) 591
MseI TTAA 3 cut(s) 45, 249, 896
MslI CAYNNNNRTG 1 cut(s) 158
MspI CCGG 2 cut(s) 203, 1090
MspR9I CCNGG 7 cut(s) 204, 279, 360, 403, 426, 936, 1017
MvaI CCWGG 6 cut(s) 279, 360, 403, 426, 936, 1017
MwoI GCNNNNNNNGC 4 cut(s) 107, 130, 626, 955
NciI CCSGG 1 cut(s) 204
NdeII GATC 7 cut(s) 142, 150, 175, 373, 992, 1030, 1045
NheI GCTAGC 1 cut(s) 188
NlaIII CATG 4 cut(s) 19, 839, 872, 984
NspI RCATGY 2 cut(s) 839, 872
NspV TTCGAA 1 cut(s) 968
PceI AGGCCT 2 cut(s) 340, 457
PciI ACATGT 1 cut(s) 868
PciSI GCTCTTC 1 cut(s) 401
PdmI GAANNNNTTC 1 cut(s) 591
PfeI GAWTC 2 cut(s) 794, 823
PfoI TCCNGGA 2 cut(s) 401, 1015
PkrI GCNGC 1 cut(s) 760
PleI GAGTC 1 cut(s) 1066
PpsI GAGTC 1 cut(s) 1066
PpuMI RGGWCCY 2 cut(s) 347, 449
PscI ACATGT 1 cut(s) 868
Psp124BI GAGCTC 1 cut(s) 286
Psp5II RGGWCCY 2 cut(s) 347, 449
Psp6I CCWGG 6 cut(s) 277, 358, 401, 424, 934, 1015
PspGI CCWGG 6 cut(s) 277, 358, 401, 424, 934, 1015
PspPI GGNCC 6 cut(s) 275, 347, 449, 704, 1005, 1119
PspPPI RGGWCCY 2 cut(s) 347, 449
PsuI RGATCY 1 cut(s) 142
RsaI GTAC 3 cut(s) 663, 1071, 1094
RsaNI GTAC 3 cut(s) 662, 1070, 1093
RseI CAYNNNNRTG 1 cut(s) 158
SacI GAGCTC 1 cut(s) 286
SapI GCTCTTC 1 cut(s) 401
SaqAI TTAA 3 cut(s) 45, 249, 896
SatI GCNGC 1 cut(s) 759
Sau3AI GATC 7 cut(s) 142, 150, 175, 373, 992, 1030, 1045
Sau96I GGNCC 6 cut(s) 275, 347, 449, 704, 1005, 1119
SchI GAGTC 1 cut(s) 1067
ScrFI CCNGG 7 cut(s) 204, 279, 360, 403, 426, 936, 1017
SduI GDGCHC 2 cut(s) 286, 523
SexAI ACCWGGT 1 cut(s) 424
SfuI TTCGAA 1 cut(s) 968
SinI GGWCC 3 cut(s) 347, 449, 1119
SmiMI CAYNNNNRTG 1 cut(s) 158
SmlI CTYRAG 1 cut(s) 731
SmoI CTYRAG 1 cut(s) 731
SpeI ACTAGT 1 cut(s) 170
Sse9I AATT 7 cut(s) 80, 156, 307, 552, 569, 587, 1038
SseBI AGGCCT 2 cut(s) 340, 457
SspMI CTAG 6 cut(s) 171, 189, 228, 453, 602, 753
SstI GAGCTC 1 cut(s) 286
StuI AGGCCT 2 cut(s) 340, 457
StyD4I CCNGG 7 cut(s) 202, 277, 358, 401, 424, 934, 1015
StyI CCWWGG 3 cut(s) 111, 452, 495
TaaI ACNGT 3 cut(s) 617, 688, 1069
TaiI ACGT 2 cut(s) 330, 715
TaqI TCGA 2 cut(s) 857, 968
TasI AATT 7 cut(s) 80, 156, 307, 552, 569, 587, 1038
TfiI GAWTC 2 cut(s) 794, 823
Tru1I TTAA 3 cut(s) 45, 249, 896
Tru9I TTAA 3 cut(s) 45, 249, 896
TscAI CASTG 2 cut(s) 589, 1129
TseI GCWGC 1 cut(s) 758
TspDTI ATGAA 3 cut(s) 582, 584, 879
TspRI CASTG 2 cut(s) 589, 1129
VpaK11BI GGWCC 3 cut(s) 347, 449, 1119
XapI RAATTY 4 cut(s) 80, 569, 587, 1038
XceI RCATGY 2 cut(s) 839, 872
XmaJI CCTAGG 1 cut(s) 452
XmiI GTMKAC 3 cut(s) 93, 221, 845
XmnI GAANNNNTTC 1 cut(s) 591
XspI CTAG 6 cut(s) 171, 189, 228, 453, 602, 753
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.