Rmu_sc0000236.1_g000038

Flowering time control protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000236.1
OG0002760
Physical Location & Seq
Forward (+)
94189 .. 99659
5471 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 795 bp
atggaggctcacgctcgtgaaggaagatctggaaaggcgtggccacgcattgcccactcctttgaatcattaatggattacgaccttccaggaagggataaaggccttccattctttggacgaaagactatcctcgcaaaaccatccaagaagctatgggtaggtggaattagcccatctgtgtcgaaggaagaattagaagaagaatttctcaagtttggaaaattggaggacttcaggttccgtagagaccggaatcctgcatgtcttgaatattgtagattggaggatgcttctgaaacaatgagtaatatgaatgggaagcgattgggtggtgaccagatgcagatacatgtggattttcttcgatcacaaccttcaacctcaaaagggagcgtaaacgaagctcagcgtgccgaggagggtttgcaaggcaggattttcaatgatcctcgaatcacaattatgttttcaaccagtgatctgccaccagctggcccataccaaccgggaggaggcaaatggtctactcctagacctgatatgcatcaatttaatgaacattcaatgagtaacttcgggcctagagctctaccacaaagtccaagtggtaactttcttggaccaaatgacgttccaatgaggcctttaggtcctctgcctcctggtagatttgatgatctgctttattatcaagatggcagttccaagaagagccgccttagtccaccattattgccaagggtggaacacccatttgtcgtgctcgatgtgtccctgtatgcaaaaggataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0000785 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006325 GO:0006342 GO:0006355 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009553 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009911 GO:0009987 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0019219 GO:0019222 GO:0022414 GO:0031047 GO:0031048 GO:0031123 GO:0031124 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0034641 GO:0040029 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048229 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000243 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1 SPOC

Protein Analysis

264

Amino Acids

29.59

Weight (kDa)

8.8

Isoelectric Point (pI)

55.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 52 - 114 1.9e-08 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 116, 494
AccI GTMKAC 1 cut(s) 527
AciI CCGC 1 cut(s) 718
AclWI GGATC 1 cut(s) 443
AcoI YGGCCR 1 cut(s) 41
AcsI RAATTY 1 cut(s) 206
AcuI CTGAAG 1 cut(s) 220
AfiI CCNNNNNNNGG 4 cut(s) 116, 390, 494, 515
AflIII ACRYGT 1 cut(s) 352
AgsI TTSAA 6 cut(s) 65, 272, 381, 445, 474, 567
AjnI CCWGG 2 cut(s) 88, 664
AleI CACNNNNGTG 1 cut(s) 15
AloI GAACNNNNNNTCC 2 cut(s) 224, 256
AluBI AGCT 4 cut(s) 154, 407, 494, 590
AluI AGCT 4 cut(s) 154, 407, 494, 590
Alw21I GWGCWC 2 cut(s) 592, 768
Alw26I GTCTC 1 cut(s) 243
AlwI GGATC 1 cut(s) 443
AoxI GGCC 5 cut(s) 41, 103, 496, 581, 644
ApoI RAATTY 1 cut(s) 206
AseI ATTAAT 1 cut(s) 71
Asp700I GAANNNNTTC 1 cut(s) 207
AspS9I GGNCC 4 cut(s) 497, 581, 623, 653
AsuC2I CCSGG 1 cut(s) 510
AsuHPI GGTGA 1 cut(s) 347
AvaII GGWCC 2 cut(s) 623, 653
BalI TGGCCA 1 cut(s) 43
BanII GRGCYC 1 cut(s) 592
BauI CACGAG 1 cut(s) 15
Bbv12I GWGCWC 2 cut(s) 592, 768
BccI CCATC 3 cut(s) 151, 184, 692
BciT130I CCWGG 2 cut(s) 90, 666
BcnI CCSGG 1 cut(s) 510
BcoDI GTCTC 1 cut(s) 243
BfaI CTAG 2 cut(s) 534, 585
BglII AGATCT 1 cut(s) 26
BisI GCNGC 1 cut(s) 718
BlpI GCTNAGC 1 cut(s) 408
BlsI GCNGC 1 cut(s) 719
Bme1390I CCNGG 3 cut(s) 90, 510, 666
Bme18I GGWCC 2 cut(s) 623, 653
BmgT120I GGNCC 4 cut(s) 497, 581, 623, 653
BmiI GGNNCC 1 cut(s) 242
BmrFI CCNGG 3 cut(s) 90, 510, 666
BmsI GCATC 3 cut(s) 280, 333, 556
Bpu1102I GCTNAGC 1 cut(s) 408
BpuEI CTTGAG 1 cut(s) 197
BpuMI CCSGG 1 cut(s) 510
BsaBI GATNNNNATC 1 cut(s) 546
BsaI GGTCTC 1 cut(s) 243
BsaJI CCNNGG 2 cut(s) 417, 740
BsaWI WCCGGW 1 cut(s) 252
Bsc4I CCNNNNNNNGG 4 cut(s) 116, 390, 494, 515
Bse1I ACTGG 1 cut(s) 477
Bse3DI GCAATG 1 cut(s) 48
Bse8I GATNNNNATC 1 cut(s) 546
BseBI CCWGG 2 cut(s) 90, 666
BseDI CCNNGG 2 cut(s) 417, 740
BseGI GGATG 2 cut(s) 143, 295
BseJI GATNNNNATC 1 cut(s) 546
BseLI CCNNNNNNNGG 4 cut(s) 116, 390, 494, 515
BseMI GCAATG 1 cut(s) 48
BseMII CTCAG 1 cut(s) 422
BseNI ACTGG 1 cut(s) 477
BseRI GAGGAG 2 cut(s) 434, 528
BshFI GGCC 5 cut(s) 43, 105, 498, 583, 646
BsiHKAI GWGCWC 2 cut(s) 592, 768
BsiSI CCGG 2 cut(s) 253, 509
BslFI GGGAC 1 cut(s) 760
BslI CCNNNNNNNGG 4 cut(s) 116, 390, 494, 515
BsmAI GTCTC 1 cut(s) 243
BsmFI GGGAC 1 cut(s) 760
BsnI GGCC 5 cut(s) 43, 105, 498, 583, 646
Bso31I GGTCTC 1 cut(s) 243
Bsp1286I GDGCHC 2 cut(s) 592, 768
Bsp143I GATC 5 cut(s) 26, 368, 448, 481, 679
Bsp1720I GCTNAGC 1 cut(s) 408
BspACI CCGC 1 cut(s) 718
BspANI GGCC 5 cut(s) 43, 105, 498, 583, 646
BspCNI CTCAG 1 cut(s) 421
BspLI GGNNCC 1 cut(s) 242
BspPI GGATC 1 cut(s) 443
BspQI GCTCTTC 1 cut(s) 707
BspTNI GGTCTC 1 cut(s) 243
BsrDI GCAATG 1 cut(s) 48
BsrI ACTGG 1 cut(s) 477
BssECI CCNNGG 2 cut(s) 417, 740
BssMI GATC 5 cut(s) 26, 368, 448, 481, 679
BssSI CACGAG 1 cut(s) 15
BssT1I CCWWGG 1 cut(s) 740
Bst2BI CACGAG 1 cut(s) 15
Bst2UI CCWGG 2 cut(s) 90, 666
Bst6I CTCTTC 1 cut(s) 707
BstC8I GCNNGC 2 cut(s) 414, 496
BstDEI CTNAG 2 cut(s) 408, 722
BstEII GGTNACC 1 cut(s) 335
BstF5I GGATG 2 cut(s) 143, 295
BstKTI GATC 5 cut(s) 29, 371, 451, 484, 682
BstMAI GTCTC 1 cut(s) 243
BstMBI GATC 5 cut(s) 26, 368, 448, 481, 679
BstMWI GCNNNNNNNGC 1 cut(s) 413
BstNI CCWGG 2 cut(s) 90, 666
BstNSI RCATGY 2 cut(s) 267, 356
BstPI GGTNACC 1 cut(s) 335
BstSCI CCNGG 3 cut(s) 88, 508, 664
BstX2I RGATCY 1 cut(s) 26
BstYI RGATCY 1 cut(s) 26
BsuRI GGCC 5 cut(s) 43, 105, 498, 583, 646
BtsCI GGATG 2 cut(s) 143, 295
BtsIMutI CAGTG 1 cut(s) 484
Cac8I GCNNGC 2 cut(s) 414, 496
Cfr13I GGNCC 4 cut(s) 497, 581, 623, 653
CspCI CAANNNNNGTGG 2 cut(s) 717, 752
CviAII CATG 2 cut(s) 264, 353
DdeI CTNAG 2 cut(s) 408, 722
DpnI GATC 5 cut(s) 28, 370, 450, 483, 681
DpnII GATC 5 cut(s) 26, 368, 448, 481, 679
EaeI YGGCCR 1 cut(s) 41
Eam1104I CTCTTC 1 cut(s) 707
EarI CTCTTC 1 cut(s) 707
Ecl136II GAGCTC 1 cut(s) 590
Eco130I CCWWGG 1 cut(s) 740
Eco147I AGGCCT 2 cut(s) 105, 646
Eco24I GRGCYC 1 cut(s) 592
Eco31I GGTCTC 1 cut(s) 243
Eco47I GGWCC 2 cut(s) 623, 653
Eco53kI GAGCTC 1 cut(s) 590
Eco57I CTGAAG 1 cut(s) 220
Eco91I GGTNACC 1 cut(s) 335
EcoICRI GAGCTC 1 cut(s) 590
EcoO109I RGGNCCY 1 cut(s) 653
EcoO65I GGTNACC 1 cut(s) 335
EcoRII CCWGG 2 cut(s) 88, 664
EcoT14I CCWWGG 1 cut(s) 740
EcoT22I ATGCAT 1 cut(s) 549
EcoT38I GRGCYC 1 cut(s) 592
ErhI CCWWGG 1 cut(s) 740
FaeI CATG 2 cut(s) 267, 356
FaiI YATR 8 cut(s) 157, 265, 314, 354, 467, 502, 545, 783
FaqI GGGAC 1 cut(s) 760
FatI CATG 2 cut(s) 263, 352
FblI GTMKAC 1 cut(s) 527
Fnu4HI GCNGC 1 cut(s) 718
FokI GGATG 2 cut(s) 130, 302
FriOI GRGCYC 1 cut(s) 592
Fsp4HI GCNGC 1 cut(s) 718
FspBI CTAG 2 cut(s) 534, 585
GluI GCNGC 1 cut(s) 718
HaeIII GGCC 5 cut(s) 43, 105, 498, 583, 646
HapII CCGG 2 cut(s) 253, 509
Hin1II CATG 2 cut(s) 267, 356
HinfI GANTC 3 cut(s) 65, 256, 456
HpaII CCGG 2 cut(s) 253, 509
HphI GGTGA 1 cut(s) 347
Hpy166II GTNNAC 3 cut(s) 400, 528, 728
Hpy188I TCNGA 1 cut(s) 298
Hpy188III TCNNGA 4 cut(s) 17, 30, 269, 695
Hpy8I GTNNAC 3 cut(s) 400, 528, 728
HpyAV CCTTC 6 cut(s) 14, 87, 95, 116, 181, 387
HpyCH4IV ACGT 1 cut(s) 633
HpyCH4V TGCA 5 cut(s) 263, 346, 430, 547, 785
HpyF10VI GCNNNNNNNGC 1 cut(s) 413
HpyF3I CTNAG 2 cut(s) 408, 722
HpySE526I ACGT 1 cut(s) 633
Hsp92II CATG 2 cut(s) 267, 356
Kzo9I GATC 5 cut(s) 26, 368, 448, 481, 679
LguI GCTCTTC 1 cut(s) 707
LmnI GCTCC 1 cut(s) 393
LweI GCATC 3 cut(s) 280, 333, 556
MaeI CTAG 2 cut(s) 534, 585
MaeII ACGT 1 cut(s) 633
MaeIII GTNAC 3 cut(s) 335, 572, 611
MalI GATC 5 cut(s) 28, 370, 450, 483, 681
MboI GATC 5 cut(s) 26, 368, 448, 481, 679
MboII GAAGA 6 cut(s) 36, 203, 212, 215, 356, 724
MflI RGATCY 1 cut(s) 26
MhlI GDGCHC 2 cut(s) 592, 768
MlsI TGGCCA 1 cut(s) 43
MluCI AATT 6 cut(s) 168, 194, 206, 224, 462, 551
MluNI TGGCCA 1 cut(s) 43
Mox20I TGGCCA 1 cut(s) 43
Mph1103I ATGCAT 1 cut(s) 549
MroXI GAANNNNTTC 1 cut(s) 207
MscI TGGCCA 1 cut(s) 43
MseI TTAA 2 cut(s) 71, 555
MslI CAYNNNNRTG 2 cut(s) 15, 464
Msp20I TGGCCA 1 cut(s) 43
MspA1I CMGCKG 1 cut(s) 494
MspI CCGG 2 cut(s) 253, 509
MspR9I CCNGG 3 cut(s) 90, 510, 666
MvaI CCWGG 2 cut(s) 90, 666
MwoI GCNNNNNNNGC 1 cut(s) 413
NciI CCSGG 1 cut(s) 510
NdeII GATC 5 cut(s) 26, 368, 448, 481, 679
NlaIII CATG 2 cut(s) 267, 356
NlaIV GGNNCC 1 cut(s) 242
NmeAIII GCCGAG 1 cut(s) 442
NmuCI GTSAC 1 cut(s) 335
NsiI ATGCAT 1 cut(s) 549
NspI RCATGY 2 cut(s) 267, 356
OliI CACNNNNGTG 1 cut(s) 15
PceI AGGCCT 2 cut(s) 105, 646
PciI ACATGT 1 cut(s) 352
PciSI GCTCTTC 1 cut(s) 707
PdmI GAANNNNTTC 1 cut(s) 207
PfeI GAWTC 3 cut(s) 65, 256, 456
PflMI CCANNNNNTGG 2 cut(s) 116, 494
PfoI TCCNGGA 1 cut(s) 88
PkrI GCNGC 1 cut(s) 719
PpuMI RGGWCCY 1 cut(s) 653
PscI ACATGT 1 cut(s) 352
PshBI ATTAAT 1 cut(s) 71
Psp124BI GAGCTC 1 cut(s) 592
Psp5II RGGWCCY 1 cut(s) 653
Psp6I CCWGG 2 cut(s) 88, 664
PspEI GGTNACC 1 cut(s) 335
PspGI CCWGG 2 cut(s) 88, 664
PspN4I GGNNCC 1 cut(s) 242
PspPI GGNCC 4 cut(s) 497, 581, 623, 653
PspPPI RGGWCCY 1 cut(s) 653
PsuI RGATCY 1 cut(s) 26
PvuII CAGCTG 1 cut(s) 494
RseI CAYNNNNRTG 2 cut(s) 15, 464
SacI GAGCTC 1 cut(s) 592
SapI GCTCTTC 1 cut(s) 707
SaqAI TTAA 2 cut(s) 71, 555
SatI GCNGC 1 cut(s) 718
Sau3AI GATC 5 cut(s) 26, 368, 448, 481, 679
Sau96I GGNCC 4 cut(s) 497, 581, 623, 653
ScrFI CCNGG 3 cut(s) 90, 510, 666
SduI GDGCHC 2 cut(s) 592, 768
SfaNI GCATC 3 cut(s) 280, 333, 556
SinI GGWCC 2 cut(s) 623, 653
SmiMI CAYNNNNRTG 2 cut(s) 15, 464
SmlI CTYRAG 1 cut(s) 212
SmoI CTYRAG 1 cut(s) 212
Sse9I AATT 6 cut(s) 168, 194, 206, 224, 462, 551
SseBI AGGCCT 2 cut(s) 105, 646
SsiI CCGC 1 cut(s) 718
SspI AATATT 1 cut(s) 275
SspMI CTAG 2 cut(s) 534, 585
SstI GAGCTC 1 cut(s) 592
StuI AGGCCT 2 cut(s) 105, 646
StyD4I CCNGG 3 cut(s) 88, 508, 664
StyI CCWWGG 1 cut(s) 740
TaiI ACGT 1 cut(s) 636
TaqI TCGA 4 cut(s) 185, 367, 454, 768
TasI AATT 6 cut(s) 168, 194, 206, 224, 462, 551
TauI GCSGC 1 cut(s) 720
TfiI GAWTC 3 cut(s) 65, 256, 456
Tru1I TTAA 2 cut(s) 71, 555
Tru9I TTAA 2 cut(s) 71, 555
TscAI CASTG 1 cut(s) 484
TseFI GTSAC 1 cut(s) 335
Tsp45I GTSAC 1 cut(s) 335
TspDTI ATGAA 2 cut(s) 329, 573
TspGWI ACGGA 1 cut(s) 233
TspRI CASTG 1 cut(s) 484
Van91I CCANNNNNTGG 2 cut(s) 116, 494
VpaK11BI GGWCC 2 cut(s) 623, 653
VspI ATTAAT 1 cut(s) 71
XapI RAATTY 1 cut(s) 206
XceI RCATGY 2 cut(s) 267, 356
XmiI GTMKAC 1 cut(s) 527
XmnI GAANNNNTTC 1 cut(s) 207
XspI CTAG 2 cut(s) 534, 585
Zsp2I ATGCAT 1 cut(s) 549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.