Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000389.1

Orthogroup ID

OG0007551

Physical Location & Seq

Genomic Coordinates Forward (+)

33808 .. 38098

Gene Structure 4291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000389.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ctggatctcctcccaaactcgaccttcattctggaccctaagctcactcttctagagctcctcattgcttccttcatctacgtcctcggcttcttcggcatcgactccgtccagtccgtcatgttacgcgcctcccactacgacgggattggagttgattttgcttctgccaaaacccttttcaactcttcacagttcgccctccaaagcatttcgccgagctcgttgaaggacaaggtttataggatcttctgcaaggaaaagcgtaagctcgccggtaaaaaggggactgtaagagagtggcggcgatttggcgctagtggcttcagagaacaaccagaggattcgattatgtcagcttcagtgaaagagtttgattcaactcgggaacttcctgatccctttggcgacaaccatgccattgcccagaacatgaagccagtcatcatcaaattgaactacaatgacccattctcaacctcccgctacagccattccatccttatatgtgttaccaggccaaaactcgaaggaactgttgcaaatggagaagcctcaaattcagagagtagactgatttggtggtttcgtgatagattgaagaaggcctcgggagttttctgggaaagaaaaagggattgggcgggagttttcaggaagattttggatatctctgggaggtgggcttgggtttgttttggaagaggttatttcctggaggcctaccgcctagtgaggaagggtgatctcttcattttgagagttggaatgaggagtgtcgagttcaaggttattgagactgatcattctgagtactgtgttgtagctccaaacattgaaatatttccaatagtgtttactaaagtggctacagataagaattctaaagctagatcaaatgtctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 ko05134 map04141 map05134

Pfam Domains

Protein Families

CDC48_2 CDC48_N Vps4_C

Protein Analysis

301

Amino Acids

34.35

Weight (kDa)

9.55

Isoelectric Point (pI)

38.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007551)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0478911
rosa_laevigata	RLG00000026511
rosa_multiflora	Rmu_sc0000389.1_g000007 Rmu_sc0000928.1_g000027 Rmu_sc0002095.1_g000017 Rmu_sc0002638.1_g000012 Rmu_sc0002758.1_g000004 Rmu_sc0009858.1_g000003
rosa_roxburghii	Rroxscaffold_1G00073970
rosa_rugosa	Rorug04G0136700 Rorug04G0136700 Rorug04G0136800
rosa_samantha	Rh1AG191900 Rh1CG176800 Rh2BG338400 Rh2CG545100 Rh3BG252700 Rh6AG125800 Rh7AG444700 Rh7CG089300
rosa_wichuraiana	Rw1G012980 Rw1G015750 Rw4G030500 Rw5G014980 Rw7G032850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	571
AccII	CGCG	1 cut(s)	129
AciI	CCGC	4 cut(s)	304, 484, 644, 727
AclWI	GGATC	3 cut(s)	12, 254, 392
AcsI	RAATTY	2 cut(s)	559, 880
AcuI	CTGAAG	2 cut(s)	310, 345
AfaI	GTAC	1 cut(s)	815
AgsI	TTSAA	7 cut(s)	184, 229, 381, 457, 601, 787, 839
AjnI	CCWGG	2 cut(s)	515, 714
AjuI	GAANNNNNNNTTGG	4 cut(s)	164, 196, 622, 654
AluBI	AGCT	7 cut(s)	43, 58, 222, 271, 359, 827, 890
AluI	AGCT	7 cut(s)	43, 58, 222, 271, 359, 827, 890
Alw21I	GWGCWC	2 cut(s)	60, 224
Alw26I	GTCTC	1 cut(s)	791
AlwI	GGATC	3 cut(s)	12, 254, 392
Ama87I	CYCGRG	2 cut(s)	384, 610
AoxI	GGCC	3 cut(s)	518, 606, 720
ApoI	RAATTY	2 cut(s)	559, 880
Asp700I	GAANNNNTTC	1 cut(s)	843
AspLEI	GCGC	2 cut(s)	131, 317
AspS9I	GGNCC	1 cut(s)	34
AsuHPI	GGTGA	1 cut(s)	755
AvaI	CYCGRG	2 cut(s)	384, 610
AvaII	GGWCC	1 cut(s)	34
BanII	GRGCYC	2 cut(s)	60, 224
Bbv12I	GWGCWC	2 cut(s)	60, 224
BccI	CCATC	1 cut(s)	506
BcgI	CGANNNNNNTGC	2 cut(s)	398, 432
BciT130I	CCWGG	2 cut(s)	517, 716
BclI	TGATCA	1 cut(s)	802
BcoDI	GTCTC	1 cut(s)	791
BfaI	CTAG	5 cut(s)	53, 318, 731, 891, 904
BfmI	CTRYAG	2 cut(s)	487, 870
BfoI	RGCGCY	1 cut(s)	318
BisI	GCNGC	1 cut(s)	305
BlsI	GCNGC	1 cut(s)	306
BmcAI	AGTACT	1 cut(s)	815
Bme1390I	CCNGG	2 cut(s)	517, 716
Bme18I	GGWCC	1 cut(s)	34
BmeT110I	CYCGRG	2 cut(s)	384, 610
BmgT120I	GGNCC	1 cut(s)	34
BmiI	GGNNCC	1 cut(s)	36
BmrFI	CCNGG	2 cut(s)	517, 716
BmsI	GCATC	1 cut(s)	108
BpmI	CTGGAG	1 cut(s)	737
Bpu10I	CCTNAGC	1 cut(s)	39
BsaJI	CCNNGG	2 cut(s)	85, 609
Bse118I	RCCGGY	1 cut(s)	275
Bse1I	ACTGG	2 cut(s)	112, 440
Bse3DI	GCAATG	2 cut(s)	63, 420
BseBI	CCWGG	2 cut(s)	517, 716
BseDI	CCNNGG	2 cut(s)	85, 609
BseGI	GGATG	1 cut(s)	498
BseMI	GCAATG	2 cut(s)	63, 420
BseMII	CTCAG	1 cut(s)	801
BseNI	ACTGG	2 cut(s)	112, 440
BseRI	GAGGAG	2 cut(s)	50, 787
Bsh1236I	CGCG	1 cut(s)	129
BshFI	GGCC	3 cut(s)	520, 608, 722
BsiHKAI	GWGCWC	2 cut(s)	60, 224
BsiHKCI	CYCGRG	2 cut(s)	384, 610
BsiSI	CCGG	1 cut(s)	276
BslFI	GGGAC	1 cut(s)	301
BsmAI	GTCTC	1 cut(s)	791
BsmFI	GGGAC	1 cut(s)	301
BsnI	GGCC	3 cut(s)	520, 608, 722
BsoBI	CYCGRG	2 cut(s)	384, 610
Bsp1286I	GDGCHC	2 cut(s)	60, 224
Bsp143I	GATC	6 cut(s)	4, 246, 397, 745, 802, 893
BspACI	CCGC	4 cut(s)	304, 484, 644, 727
BspANI	GGCC	3 cut(s)	520, 608, 722
BspCNI	CTCAG	1 cut(s)	802
BspFNI	CGCG	1 cut(s)	129
BspLI	GGNNCC	1 cut(s)	36
BspPI	GGATC	3 cut(s)	12, 254, 392
BsrDI	GCAATG	2 cut(s)	63, 420
BsrFI	RCCGGY	1 cut(s)	275
BsrI	ACTGG	2 cut(s)	112, 440
BssAI	RCCGGY	1 cut(s)	275
BssECI	CCNNGG	2 cut(s)	85, 609
BssMI	GATC	6 cut(s)	4, 246, 397, 745, 802, 893
Bst2UI	CCWGG	2 cut(s)	517, 716
Bst4CI	ACNGT	4 cut(s)	195, 292, 538, 818
Bst6I	CTCTTC	4 cut(s)	54, 193, 697, 755
BstC8I	GCNNGC	1 cut(s)	273
BstDEI	CTNAG	2 cut(s)	39, 810
BstF5I	GGATG	1 cut(s)	498
BstFNI	CGCG	1 cut(s)	129
BstH2I	RGCGCY	1 cut(s)	318
BstHHI	GCGC	2 cut(s)	131, 317
BstKTI	GATC	6 cut(s)	7, 249, 400, 748, 805, 896
BstMAI	GTCTC	1 cut(s)	791
BstMBI	GATC	6 cut(s)	4, 246, 397, 745, 802, 893
BstMWI	GCNNNNNNNGC	2 cut(s)	96, 321
BstNI	CCWGG	2 cut(s)	517, 716
BstSCI	CCNGG	2 cut(s)	515, 714
BstSFI	CTRYAG	2 cut(s)	487, 870
BstUI	CGCG	1 cut(s)	129
BstX2I	RGATCY	2 cut(s)	4, 246
BstYI	RGATCY	2 cut(s)	4, 246
BsuRI	GGCC	3 cut(s)	520, 608, 722
BtsCI	GGATG	1 cut(s)	498
BtsIMutI	CAGTG	1 cut(s)	369
Cac8I	GCNNGC	1 cut(s)	273
CfoI	GCGC	2 cut(s)	131, 317
Cfr10I	RCCGGY	1 cut(s)	275
Cfr13I	GGNCC	1 cut(s)	34
Csp6I	GTAC	1 cut(s)	814
CviAII	CATG	3 cut(s)	121, 416, 433
CviQI	GTAC	1 cut(s)	814
DdeI	CTNAG	2 cut(s)	39, 810
DpnI	GATC	6 cut(s)	6, 248, 399, 747, 804, 895
DpnII	GATC	6 cut(s)	4, 246, 397, 745, 802, 893
Eam1104I	CTCTTC	4 cut(s)	54, 193, 697, 755
EarI	CTCTTC	4 cut(s)	54, 193, 697, 755
Ecl136II	GAGCTC	2 cut(s)	58, 222
Eco147I	AGGCCT	2 cut(s)	608, 722
Eco24I	GRGCYC	2 cut(s)	60, 224
Eco32I	GATATC	1 cut(s)	670
Eco47I	GGWCC	1 cut(s)	34
Eco53kI	GAGCTC	2 cut(s)	58, 222
Eco57I	CTGAAG	2 cut(s)	310, 345
Eco88I	CYCGRG	2 cut(s)	384, 610
EcoICRI	GAGCTC	2 cut(s)	58, 222
EcoRI	GAATTC	1 cut(s)	880
EcoRII	CCWGG	2 cut(s)	515, 714
EcoRV	GATATC	1 cut(s)	670
EcoT38I	GRGCYC	2 cut(s)	60, 224
FaeI	CATG	3 cut(s)	124, 419, 436
FaiI	YATR	7 cut(s)	122, 243, 353, 417, 434, 506, 508
FaqI	GGGAC	1 cut(s)	301
FatI	CATG	3 cut(s)	120, 415, 432
FauI	CCCGC	2 cut(s)	491, 637
FbaI	TGATCA	1 cut(s)	802
FblI	GTMKAC	1 cut(s)	571
Fnu4HI	GCNGC	1 cut(s)	305
FokI	GGATG	1 cut(s)	485
FriOI	GRGCYC	2 cut(s)	60, 224
Fsp4HI	GCNGC	1 cut(s)	305
FspBI	CTAG	5 cut(s)	53, 318, 731, 891, 904
GlaI	GCGC	2 cut(s)	130, 316
GluI	GCNGC	1 cut(s)	305
GsuI	CTGGAG	1 cut(s)	737
HaeII	RGCGCY	1 cut(s)	318
HaeIII	GGCC	3 cut(s)	520, 608, 722
HapII	CCGG	1 cut(s)	276
HhaI	GCGC	2 cut(s)	131, 317
Hin1II	CATG	3 cut(s)	124, 419, 436
Hin6I	GCGC	2 cut(s)	129, 315
HinP1I	GCGC	2 cut(s)	129, 315
HinfI	GANTC	3 cut(s)	104, 344, 377
HpaII	CCGG	1 cut(s)	276
HphI	GGTGA	1 cut(s)	755
Hpy166II	GTNNAC	2 cut(s)	572, 858
Hpy188I	TCNGA	3 cut(s)	329, 565, 811
Hpy188III	TCNNGA	7 cut(s)	32, 53, 386, 395, 590, 612, 655
Hpy8I	GTNNAC	2 cut(s)	572, 858
Hpy99I	CGWCG	1 cut(s)	146
HpyAV	CCTTC	6 cut(s)	34, 82, 223, 524, 598, 733
HpyCH4III	ACNGT	4 cut(s)	195, 292, 538, 818
HpyCH4IV	ACGT	1 cut(s)	81
HpyCH4V	TGCA	2 cut(s)	255, 542
HpyF10VI	GCNNNNNNNGC	2 cut(s)	96, 321
HpyF3I	CTNAG	2 cut(s)	39, 810
HpySE526I	ACGT	1 cut(s)	81
Hsp92II	CATG	3 cut(s)	124, 419, 436
HspAI	GCGC	2 cut(s)	129, 315
Ksp22I	TGATCA	1 cut(s)	802
Kzo9I	GATC	6 cut(s)	4, 246, 397, 745, 802, 893
LmnI	GCTCC	2 cut(s)	63, 832
LweI	GCATC	1 cut(s)	108
MaeI	CTAG	5 cut(s)	53, 318, 731, 891, 904
MaeII	ACGT	1 cut(s)	81
MaeIII	GTNAC	2 cut(s)	123, 511
MalI	GATC	6 cut(s)	6, 248, 399, 747, 804, 895
MboI	GATC	6 cut(s)	4, 246, 397, 745, 802, 893
MboII	GAAGA	8 cut(s)	41, 85, 180, 241, 613, 670, 714, 742
MflI	RGATCY	2 cut(s)	4, 246
MhlI	GDGCHC	2 cut(s)	60, 224
MluCI	AATT	3 cut(s)	452, 559, 880
MlyI	GAGTC	1 cut(s)	98
MmeI	TCCRAC	1 cut(s)	745
MroXI	GAANNNNTTC	1 cut(s)	843
MspI	CCGG	1 cut(s)	276
MspR9I	CCNGG	2 cut(s)	517, 716
MvaI	CCWGG	2 cut(s)	517, 716
MvnI	CGCG	1 cut(s)	129
MwoI	GCNNNNNNNGC	2 cut(s)	96, 321
NdeII	GATC	6 cut(s)	4, 246, 397, 745, 802, 893
NlaIII	CATG	3 cut(s)	124, 419, 436
NlaIV	GGNNCC	1 cut(s)	36
NmeAIII	GCCGAG	2 cut(s)	66, 243
PceI	AGGCCT	2 cut(s)	608, 722
PcsI	WCGNNNNNNNCGW	1 cut(s)	221
PdmI	GAANNNNTTC	1 cut(s)	843
PfeI	GAWTC	2 cut(s)	344, 377
PflFI	GACNNNGTC	1 cut(s)	107
PfoI	TCCNGGA	1 cut(s)	714
PkrI	GCNGC	1 cut(s)	306
PleI	GAGTC	1 cut(s)	98
PpsI	GAGTC	1 cut(s)	98
Psp124BI	GAGCTC	2 cut(s)	60, 224
Psp6I	CCWGG	2 cut(s)	515, 714
PspGI	CCWGG	2 cut(s)	515, 714
PspN4I	GGNNCC	1 cut(s)	36
PspPI	GGNCC	1 cut(s)	34
PsuI	RGATCY	2 cut(s)	4, 246
PsyI	GACNNNGTC	1 cut(s)	107
RsaI	GTAC	1 cut(s)	815
RsaNI	GTAC	1 cut(s)	814
SacI	GAGCTC	2 cut(s)	60, 224
SatI	GCNGC	1 cut(s)	305
Sau3AI	GATC	6 cut(s)	4, 246, 397, 745, 802, 893
Sau96I	GGNCC	1 cut(s)	34
ScaI	AGTACT	1 cut(s)	815
SchI	GAGTC	1 cut(s)	98
ScrFI	CCNGG	2 cut(s)	517, 716
SduI	GDGCHC	2 cut(s)	60, 224
SfaNI	GCATC	1 cut(s)	108
SfcI	CTRYAG	2 cut(s)	487, 870
SinI	GGWCC	1 cut(s)	34
Sse9I	AATT	3 cut(s)	452, 559, 880
SseBI	AGGCCT	2 cut(s)	608, 722
SsiI	CCGC	4 cut(s)	304, 484, 644, 727
SspI	AATATT	1 cut(s)	843
SspMI	CTAG	5 cut(s)	53, 318, 731, 891, 904
SstI	GAGCTC	2 cut(s)	60, 224
StuI	AGGCCT	2 cut(s)	608, 722
StyD4I	CCNGG	2 cut(s)	515, 714
TaaI	ACNGT	4 cut(s)	195, 292, 538, 818
TaiI	ACGT	1 cut(s)	84
TaqI	TCGA	5 cut(s)	20, 102, 347, 528, 780
TasI	AATT	3 cut(s)	452, 559, 880
TatI	WGTACW	1 cut(s)	813
TauI	GCSGC	1 cut(s)	307
TfiI	GAWTC	2 cut(s)	344, 377
TscAI	CASTG	1 cut(s)	369
TspDTI	ATGAA	4 cut(s)	16, 64, 449, 742
TspGWI	ACGGA	2 cut(s)	97, 106
TspRI	CASTG	1 cut(s)	369
Tth111I	GACNNNGTC	1 cut(s)	107
VpaK11BI	GGWCC	1 cut(s)	34
XapI	RAATTY	2 cut(s)	559, 880
XbaI	TCTAGA	1 cut(s)	52
XmiI	GTMKAC	1 cut(s)	571
XmnI	GAANNNNTTC	1 cut(s)	843
XspI	CTAG	5 cut(s)	53, 318, 731, 891, 904
ZrmI	AGTACT	1 cut(s)	815

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.