Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0007551

Physical Location & Seq

Genomic Coordinates Forward (+)

22167204 .. 22169105

Gene Structure 1902 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0136700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 207 bp

ATGACTAAATATTTATACTCACTGTTTTGGGGATTCCAGCAAATCAGCACTCTGGCAGGAAATCAAACTCCAAGCTATTTTAATGGAGAAATTGTTTTTACCATGGTAATTATTGGACTGGGACTCTTCTTCTTTGCTCTTCTAATTGGAAATATGCAGAATTTTCTTCGGTCTCTTGGACGGAGAGCTGTCATAAGCATGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005794 GO:0005829 GO:0005886 GO:0008150 GO:0009893 GO:0009894 GO:0009896 GO:0010035 GO:0010038 GO:0010604 GO:0012505 GO:0016020 GO:0019222 GO:0031974 GO:0031981 GO:0042176 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0046686 GO:0048518 GO:0050789 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0070013 GO:0071944 GO:0080090

KEGG Pathways

Metabolic & Signaling

ko04141 ko05134 map04141 map05134

Pfam Domains

Protein Families

AAA CDC48_2 CDC48_N Vps4_C

Protein Analysis

68

Amino Acids

7.76

Weight (kDa)

9.52

Isoelectric Point (pI)

22.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ion_trans	PF00520	2 - 56	1e-05	Ion transport protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007551)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0478911
rosa_laevigata	RLG00000026511
rosa_multiflora	Rmu_sc0000389.1_g000007 Rmu_sc0000928.1_g000027 Rmu_sc0002095.1_g000017 Rmu_sc0002638.1_g000012 Rmu_sc0002758.1_g000004 Rmu_sc0009858.1_g000003
rosa_roxburghii	Rroxscaffold_1G00073970
rosa_rugosa	Rorug04G0136700 Rorug04G0136700 Rorug04G0136800
rosa_samantha	Rh1AG191900 Rh1CG176800 Rh2BG338400 Rh2CG545100 Rh3BG252700 Rh6AG125800 Rh7AG444700 Rh7CG089300
rosa_wichuraiana	Rw1G012980 Rw1G015750 Rw4G030500 Rw5G014980 Rw7G032850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	160
AluBI	AGCT	2 cut(s)	75, 188
AluI	AGCT	2 cut(s)	75, 188
Alw26I	GTCTC	1 cut(s)	177
ApoI	RAATTY	1 cut(s)	160
BcoDI	GTCTC	1 cut(s)	177
BmrI	ACTGGG	1 cut(s)	128
BmuI	ACTGGG	1 cut(s)	128
BsaI	GGTCTC	1 cut(s)	177
BsaJI	CCNNGG	1 cut(s)	102
BsaXI	ACNNNNNCTCC	2 cut(s)	78, 108
Bse1I	ACTGG	1 cut(s)	123
BseDI	CCNNGG	1 cut(s)	102
BseNI	ACTGG	1 cut(s)	123
BslFI	GGGAC	1 cut(s)	135
BsmAI	GTCTC	1 cut(s)	177
BsmFI	GGGAC	1 cut(s)	135
Bso31I	GGTCTC	1 cut(s)	177
Bsp19I	CCATGG	1 cut(s)	102
BspQI	GCTCTTC	1 cut(s)	144
BspTNI	GGTCTC	1 cut(s)	177
BsrI	ACTGG	1 cut(s)	123
BssECI	CCNNGG	1 cut(s)	102
BssT1I	CCWWGG	1 cut(s)	102
Bst4CI	ACNGT	1 cut(s)	24
Bst6I	CTCTTC	2 cut(s)	131, 144
BstDSI	CCRYGG	1 cut(s)	102
BstMAI	GTCTC	1 cut(s)	177
BtgI	CCRYGG	1 cut(s)	102
BtsIMutI	CAGTG	1 cut(s)	20
CviAII	CATG	2 cut(s)	103, 199
CviJI	RGCY	2 cut(s)	75, 188
CviKI_1	RGCY	2 cut(s)	75, 188
Eam1104I	CTCTTC	2 cut(s)	131, 144
EarI	CTCTTC	2 cut(s)	131, 144
Eco130I	CCWWGG	1 cut(s)	102
Eco31I	GGTCTC	1 cut(s)	177
EcoT14I	CCWWGG	1 cut(s)	102
ErhI	CCWWGG	1 cut(s)	102
FaeI	CATG	2 cut(s)	106, 202
FaiI	YATR	5 cut(s)	16, 104, 155, 194, 200
FaqI	GGGAC	1 cut(s)	135
FatI	CATG	2 cut(s)	102, 198
Hin1II	CATG	2 cut(s)	106, 202
HinfI	GANTC	2 cut(s)	33, 123
HpyCH4III	ACNGT	1 cut(s)	24
HpyCH4V	TGCA	1 cut(s)	157
Hsp92II	CATG	2 cut(s)	106, 202
LguI	GCTCTTC	1 cut(s)	144
LpnPI	CCDG	4 cut(s)	38, 42, 50, 104
MboII	GAAGA	4 cut(s)	118, 121, 131, 158
MluCI	AATT	4 cut(s)	90, 108, 144, 160
MlyI	GAGTC	1 cut(s)	117
MseI	TTAA	1 cut(s)	81
MslI	CAYNNNNRTG	1 cut(s)	197
NcoI	CCATGG	1 cut(s)	102
NlaIII	CATG	2 cut(s)	106, 202
PciSI	GCTCTTC	1 cut(s)	144
PfeI	GAWTC	1 cut(s)	33
PleI	GAGTC	1 cut(s)	117
PpsI	GAGTC	1 cut(s)	117
RseI	CAYNNNNRTG	1 cut(s)	197
SapI	GCTCTTC	1 cut(s)	144
SaqAI	TTAA	1 cut(s)	81
SchI	GAGTC	1 cut(s)	117
SetI	ASST	2 cut(s)	77, 190
SgeI	CNNG	7 cut(s)	49, 65, 69, 84, 115, 131, 188
SmiMI	CAYNNNNRTG	1 cut(s)	197
Sse9I	AATT	4 cut(s)	90, 108, 144, 160
SspI	AATATT	1 cut(s)	11
StyI	CCWWGG	1 cut(s)	102
TaaI	ACNGT	1 cut(s)	24
TaqII	GACCGA	1 cut(s)	159
TasI	AATT	4 cut(s)	90, 108, 144, 160
TfiI	GAWTC	1 cut(s)	33
Tru1I	TTAA	1 cut(s)	81
Tru9I	TTAA	1 cut(s)	81
TscAI	CASTG	1 cut(s)	27
TspGWI	ACGGA	1 cut(s)	196
TspRI	CASTG	1 cut(s)	27
XapI	RAATTY	1 cut(s)	160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.