Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0007551

Physical Location & Seq

Genomic Coordinates Reverse (-)

44826897 .. 44831391

Gene Structure 4495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG338400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGAAGAAACGGCGTTTCAACTTCCGTTTACCTCCAAAACGGCGCCGTCTGGATAGCATTTTAATTGCCATGGCTGCCACTGCAACTGCCTCTGCTGGACAACGTCGTGATAAGGGAGATGATAGGTATGGGAGGGGCAGCAATGGTGGATCAAAATTTGAGGCAGGACTGAGGAATGTGCAGAGTTCAAGAAGTGCACCAGTTTCTTCTAACAATGGTCCAAGTGGGTCAGTTAGTACACATGGAGTATCTGTTATTAGAGGAAATGGACCATCAAACACTGGAAGTGGTTTGTCTGCTGAGGCTTATTGTCGCCAGTATGAAATAATTGTTATTGAGCATCATGTACAAACTTGTCCTGGTTATGTGTCCGTTGCCATGTTGGGAGATCAGGACAAACCAGCTCTTATCACTTATCCTTATTTAGCTTTAAATCGTTATTTACTGGAGGACTACCGCCTAGTGAGGTATGGTGATCTCTTCATTGTGAGAGTTGGAATGAGGAGTGTCGAGTTCAAGGTTATTGAGACTGACCATTCTCAATACTGTGTTGTAGCTCCAGACATTGAAATATTTCCAATAGGGTTTACTAAAGTGGCTACAGATAAGAATTCTAAAGCTGGATCAAATGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009628 GO:0009651 GO:0009987 GO:0010501 GO:0016070 GO:0016301 GO:0016310 GO:0016462 GO:0016740 GO:0016772 GO:0016773 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0031974 GO:0031981 GO:0034641 GO:0036211 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046777 GO:0050896 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140096 GO:0140098 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03040 ko05202 ko05205 map03040 map05202 map05205

Pfam Domains

Protein Families

DEAD Helicase_C WW

Protein Analysis

211

Amino Acids

23.12

Weight (kDa)

9.68

Isoelectric Point (pI)

42.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007551)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0478911
rosa_laevigata	RLG00000026511
rosa_multiflora	Rmu_sc0000389.1_g000007 Rmu_sc0000928.1_g000027 Rmu_sc0002095.1_g000017 Rmu_sc0002638.1_g000012 Rmu_sc0002758.1_g000004 Rmu_sc0009858.1_g000003
rosa_roxburghii	Rroxscaffold_1G00073970
rosa_rugosa	Rorug04G0136700 Rorug04G0136700 Rorug04G0136800
rosa_samantha	Rh1AG191900 Rh1CG176800 Rh2BG338400 Rh2CG545100 Rh3BG252700 Rh6AG125800 Rh7AG444700 Rh7CG089300
rosa_wichuraiana	Rw1G012980 Rw1G015750 Rw4G030500 Rw5G014980 Rw7G032850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	42
AciI	CCGC	1 cut(s)	457
AclWI	GGATC	2 cut(s)	157, 631
AcsI	RAATTY	2 cut(s)	155, 610
AcyI	GRCGYC	1 cut(s)	43
AfaI	GTAC	2 cut(s)	238, 348
AgsI	TTSAA	4 cut(s)	19, 189, 517, 569
AjnI	CCWGG	1 cut(s)	358
AluBI	AGCT	4 cut(s)	404, 428, 557, 620
AluI	AGCT	4 cut(s)	404, 428, 557, 620
Alw21I	GWGCWC	1 cut(s)	199
Alw26I	GTCTC	1 cut(s)	521
Alw44I	GTGCAC	1 cut(s)	195
AlwI	GGATC	2 cut(s)	157, 631
ApaLI	GTGCAC	1 cut(s)	195
ApeKI	GCWGC	2 cut(s)	74, 138
ApoI	RAATTY	2 cut(s)	155, 610
Asp700I	GAANNNNTTC	1 cut(s)	573
AspLEI	GCGC	1 cut(s)	45
AspS9I	GGNCC	2 cut(s)	218, 269
AsuHPI	GGTGA	1 cut(s)	485
AvaII	GGWCC	2 cut(s)	218, 269
BaeGI	GKGCMC	1 cut(s)	199
BanI	GGYRCC	1 cut(s)	42
Bbv12I	GWGCWC	1 cut(s)	199
BbvCI	CCTCAGC	1 cut(s)	300
BbvI	GCAGC	2 cut(s)	61, 150
BccI	CCATC	1 cut(s)	280
BceAI	ACGGC	3 cut(s)	26, 30, 56
BciT130I	CCWGG	1 cut(s)	360
BcoDI	GTCTC	1 cut(s)	521
BfaI	CTAG	2 cut(s)	461, 634
BfmI	CTRYAG	1 cut(s)	600
BfoI	RGCGCY	1 cut(s)	46
BisI	GCNGC	2 cut(s)	75, 139
BlsI	GCNGC	2 cut(s)	76, 140
Bme1390I	CCNGG	1 cut(s)	360
Bme18I	GGWCC	2 cut(s)	218, 269
BmgT120I	GGNCC	2 cut(s)	218, 269
BmiI	GGNNCC	1 cut(s)	44
BmrFI	CCNGG	1 cut(s)	360
BmsI	GCATC	1 cut(s)	349
BpmI	CTGGAG	2 cut(s)	467, 543
Bpu10I	CCTNAGC	1 cut(s)	300
BsaHI	GRCGYC	1 cut(s)	43
BsaJI	CCNNGG	1 cut(s)	69
BsaXI	ACNNNNNCTCC	2 cut(s)	237, 267
Bse1I	ACTGG	4 cut(s)	200, 286, 316, 450
Bse3DI	GCAATG	1 cut(s)	148
BseBI	CCWGG	1 cut(s)	360
BseDI	CCNNGG	1 cut(s)	69
BseMI	GCAATG	1 cut(s)	148
BseMII	CTCAG	2 cut(s)	161, 291
BseNI	ACTGG	4 cut(s)	200, 286, 316, 450
BseRI	GAGGAG	1 cut(s)	517
BseSI	GKGCMC	1 cut(s)	199
BseXI	GCAGC	2 cut(s)	61, 150
BsgI	GTGCAG	1 cut(s)	200
BshNI	GGYRCC	1 cut(s)	42
BsiHKAI	GWGCWC	1 cut(s)	199
BsmAI	GTCTC	1 cut(s)	521
Bsp1286I	GDGCHC	1 cut(s)	199
Bsp1407I	TGTACA	1 cut(s)	346
Bsp143I	GATC	4 cut(s)	149, 388, 475, 623
Bsp19I	CCATGG	1 cut(s)	69
BspACI	CCGC	1 cut(s)	457
BspCNI	CTCAG	2 cut(s)	162, 292
BspLI	GGNNCC	1 cut(s)	44
BspPI	GGATC	2 cut(s)	157, 631
BspT107I	GGYRCC	1 cut(s)	42
BsrDI	GCAATG	1 cut(s)	148
BsrGI	TGTACA	1 cut(s)	346
BsrI	ACTGG	4 cut(s)	200, 286, 316, 450
BssECI	CCNNGG	1 cut(s)	69
BssMI	GATC	4 cut(s)	149, 388, 475, 623
BssNI	GRCGYC	1 cut(s)	43
BssT1I	CCWWGG	1 cut(s)	69
Bst2UI	CCWGG	1 cut(s)	360
Bst4CI	ACNGT	1 cut(s)	548
Bst6I	CTCTTC	1 cut(s)	485
BstACI	GRCGYC	1 cut(s)	43
BstAUI	TGTACA	1 cut(s)	346
BstDEI	CTNAG	2 cut(s)	170, 300
BstDSI	CCRYGG	1 cut(s)	69
BstH2I	RGCGCY	1 cut(s)	46
BstHHI	GCGC	1 cut(s)	45
BstKTI	GATC	4 cut(s)	152, 391, 478, 626
BstMAI	GTCTC	1 cut(s)	521
BstMBI	GATC	4 cut(s)	149, 388, 475, 623
BstMWI	GCNNNNNNNGC	2 cut(s)	74, 80
BstNI	CCWGG	1 cut(s)	360
BstSCI	CCNGG	1 cut(s)	358
BstSFI	CTRYAG	1 cut(s)	600
BstSLI	GKGCMC	1 cut(s)	199
BstV1I	GCAGC	2 cut(s)	61, 150
BtgI	CCRYGG	1 cut(s)	69
BtsI	GCAGTG	1 cut(s)	78
BtsIMutI	CAGTG	2 cut(s)	78, 279
CfoI	GCGC	1 cut(s)	45
Cfr13I	GGNCC	2 cut(s)	218, 269
Csp6I	GTAC	2 cut(s)	237, 347
CviAII	CATG	4 cut(s)	70, 242, 344, 379
CviJI	RGCY	7 cut(s)	74, 305, 404, 428, 557, 599, 620
CviKI_1	RGCY	7 cut(s)	74, 305, 404, 428, 557, 599, 620
CviQI	GTAC	2 cut(s)	237, 347
DdeI	CTNAG	2 cut(s)	170, 300
DinI	GGCGCC	1 cut(s)	44
DpnI	GATC	4 cut(s)	151, 390, 477, 625
DpnII	GATC	4 cut(s)	149, 388, 475, 623
DraI	TTTAAA	1 cut(s)	432
Eam1104I	CTCTTC	1 cut(s)	485
EarI	CTCTTC	1 cut(s)	485
Eco130I	CCWWGG	1 cut(s)	69
Eco47I	GGWCC	2 cut(s)	218, 269
EcoRI	GAATTC	1 cut(s)	610
EcoRII	CCWGG	1 cut(s)	358
EcoT14I	CCWWGG	1 cut(s)	69
EgeI	GGCGCC	1 cut(s)	44
EheI	GGCGCC	1 cut(s)	44
ErhI	CCWWGG	1 cut(s)	69
FaeI	CATG	4 cut(s)	73, 245, 347, 382
FaiI	YATR	8 cut(s)	71, 129, 243, 321, 345, 366, 380, 471
FatI	CATG	4 cut(s)	69, 241, 343, 378
Fnu4HI	GCNGC	2 cut(s)	75, 139
Fsp4HI	GCNGC	2 cut(s)	75, 139
FspBI	CTAG	2 cut(s)	461, 634
GlaI	GCGC	1 cut(s)	44
GluI	GCNGC	2 cut(s)	75, 139
GsuI	CTGGAG	2 cut(s)	467, 543
HaeII	RGCGCY	1 cut(s)	46
HhaI	GCGC	1 cut(s)	45
Hin1I	GRCGYC	1 cut(s)	43
Hin1II	CATG	4 cut(s)	73, 245, 347, 382
Hin6I	GCGC	1 cut(s)	43
HinP1I	GCGC	1 cut(s)	43
HphI	GGTGA	1 cut(s)	485
Hpy166II	GTNNAC	4 cut(s)	29, 197, 239, 588
Hpy188III	TCNNGA	5 cut(s)	50, 107, 189, 392, 560
Hpy8I	GTNNAC	4 cut(s)	29, 197, 239, 588
Hpy99I	CGWCG	1 cut(s)	108
HpyCH4III	ACNGT	1 cut(s)	548
HpyCH4IV	ACGT	1 cut(s)	103
HpyCH4V	TGCA	3 cut(s)	83, 181, 197
HpyF10VI	GCNNNNNNNGC	2 cut(s)	74, 80
HpyF3I	CTNAG	2 cut(s)	170, 300
HpySE526I	ACGT	1 cut(s)	103
Hsp92I	GRCGYC	1 cut(s)	43
Hsp92II	CATG	4 cut(s)	73, 245, 347, 382
HspAI	GCGC	1 cut(s)	43
KasI	GGCGCC	1 cut(s)	42
Kzo9I	GATC	4 cut(s)	149, 388, 475, 623
LmnI	GCTCC	1 cut(s)	562
Lsp1109I	GCAGC	2 cut(s)	61, 150
LweI	GCATC	1 cut(s)	349
MaeI	CTAG	2 cut(s)	461, 634
MaeII	ACGT	1 cut(s)	103
MalI	GATC	4 cut(s)	151, 390, 477, 625
MboI	GATC	4 cut(s)	149, 388, 475, 623
MboII	GAAGA	3 cut(s)	16, 198, 472
MhlI	GDGCHC	1 cut(s)	199
MluCI	AATT	4 cut(s)	63, 155, 327, 610
Mly113I	GGCGCC	1 cut(s)	43
MmeI	TCCRAC	1 cut(s)	475
MroXI	GAANNNNTTC	1 cut(s)	573
MseI	TTAA	2 cut(s)	62, 431
MspR9I	CCNGG	1 cut(s)	360
MvaI	CCWGG	1 cut(s)	360
MwoI	GCNNNNNNNGC	2 cut(s)	74, 80
NarI	GGCGCC	1 cut(s)	43
NcoI	CCATGG	1 cut(s)	69
NdeII	GATC	4 cut(s)	149, 388, 475, 623
NlaIII	CATG	4 cut(s)	73, 245, 347, 382
NlaIV	GGNNCC	1 cut(s)	44
PdmI	GAANNNNTTC	1 cut(s)	573
PflFI	GACNNNGTC	1 cut(s)	102
PkrI	GCNGC	2 cut(s)	76, 140
PluTI	GGCGCC	1 cut(s)	46
Psp6I	CCWGG	1 cut(s)	358
PspGI	CCWGG	1 cut(s)	358
PspN4I	GGNNCC	1 cut(s)	44
PspPI	GGNCC	2 cut(s)	218, 269
PsyI	GACNNNGTC	1 cut(s)	102
RsaI	GTAC	2 cut(s)	238, 348
RsaNI	GTAC	2 cut(s)	237, 347
SaqAI	TTAA	2 cut(s)	62, 431
SatI	GCNGC	2 cut(s)	75, 139
Sau3AI	GATC	4 cut(s)	149, 388, 475, 623
Sau96I	GGNCC	2 cut(s)	218, 269
ScrFI	CCNGG	1 cut(s)	360
SduI	GDGCHC	1 cut(s)	199
SetI	ASST	9 cut(s)	34, 106, 128, 406, 430, 470, 522, 559, 622
SfaNI	GCATC	1 cut(s)	349
SfcI	CTRYAG	1 cut(s)	600
SfoI	GGCGCC	1 cut(s)	44
SinI	GGWCC	2 cut(s)	218, 269
Sse9I	AATT	4 cut(s)	63, 155, 327, 610
SsiI	CCGC	1 cut(s)	457
SspDI	GGCGCC	1 cut(s)	42
SspI	AATATT	1 cut(s)	573
SspMI	CTAG	2 cut(s)	461, 634
StyD4I	CCNGG	1 cut(s)	358
StyI	CCWWGG	1 cut(s)	69
TaaI	ACNGT	1 cut(s)	548
TaiI	ACGT	1 cut(s)	106
TaqI	TCGA	1 cut(s)	510
TasI	AATT	4 cut(s)	63, 155, 327, 610
TatI	WGTACW	2 cut(s)	236, 346
Tru1I	TTAA	2 cut(s)	62, 431
Tru9I	TTAA	2 cut(s)	62, 431
TscAI	CASTG	2 cut(s)	85, 286
TseI	GCWGC	2 cut(s)	74, 138
TspDTI	ATGAA	3 cut(s)	17, 336, 472
TspGWI	ACGGA	2 cut(s)	14, 361
TspRI	CASTG	2 cut(s)	85, 286
Tth111I	GACNNNGTC	1 cut(s)	102
VneI	GTGCAC	1 cut(s)	195
VpaK11BI	GGWCC	2 cut(s)	218, 269
XapI	RAATTY	2 cut(s)	155, 610
XmnI	GAANNNNTTC	1 cut(s)	573
XspI	CTAG	2 cut(s)	461, 634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.