Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000928.1

Orthogroup ID

OG0007551

Physical Location & Seq

Genomic Coordinates Reverse (-)

117074 .. 119788

Gene Structure 2715 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000928.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

atggctgccactgcaactgcctctgctggtcctcgatatgctccagaagaaccatggaaaggattggttgattgtaaaattgggtatctttacttttggaaccctaagaccaatagttcaagaagtgcaccagtttcttctaacaatggtccaagtgggtcagttaatgcacatggagtatctgttattagaggaaatggaccatcaaacactggaagtggtttgtctgctgaggcttattgtcggcagtatgaaataactgttattgagcatcatgtacaaacttgtcatggttatgtgtctgttgccgtgttgggagatcaggacaaaccagctcttgtcacttatcctgatgtagctttaaatcatggagaagcctcaaattcagagagtagattgatttggtggttttgttatagattaaagaaggcctcgggagttttctgggaaagaaagaggaagggtgatctcttcattatgagagttggaatgaggagtgttgagttcaaggttattgagactgatcattctgagtactgtgttgtagctctagacattgaaatatttccaatagggtttactaaagtggctacagataagaattctaaagctggatcaaatgtctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009628 GO:0009651 GO:0009987 GO:0010501 GO:0016070 GO:0016301 GO:0016310 GO:0016462 GO:0016740 GO:0016772 GO:0016773 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0031974 GO:0031981 GO:0034641 GO:0036211 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046777 GO:0050896 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140096 GO:0140098 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03040 ko05202 ko05205 map03040 map05202 map05205

Pfam Domains

Protein Families

DEAD Helicase_C WW

Protein Analysis

208

Amino Acids

22.75

Weight (kDa)

8.24

Isoelectric Point (pI)

29.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007551)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0478911
rosa_laevigata	RLG00000026511
rosa_multiflora	Rmu_sc0000389.1_g000007 Rmu_sc0000928.1_g000027 Rmu_sc0002095.1_g000017 Rmu_sc0002638.1_g000012 Rmu_sc0002758.1_g000004 Rmu_sc0009858.1_g000003
rosa_roxburghii	Rroxscaffold_1G00073970
rosa_rugosa	Rorug04G0136700 Rorug04G0136700 Rorug04G0136800
rosa_samantha	Rh1AG191900 Rh1CG176800 Rh2BG338400 Rh2CG545100 Rh3BG252700 Rh6AG125800 Rh7AG444700 Rh7CG089300
rosa_wichuraiana	Rw1G012980 Rw1G015750 Rw4G030500 Rw5G014980 Rw7G032850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	622
AcsI	RAATTY	2 cut(s)	382, 601
AfaI	GTAC	2 cut(s)	279, 536
AfiI	CCNNNNNNNGG	1 cut(s)	59
AgsI	TTSAA	3 cut(s)	120, 508, 560
AluBI	AGCT	4 cut(s)	335, 359, 548, 611
AluI	AGCT	4 cut(s)	335, 359, 548, 611
Alw21I	GWGCWC	1 cut(s)	130
Alw26I	GTCTC	1 cut(s)	512
Alw44I	GTGCAC	1 cut(s)	126
AlwI	GGATC	1 cut(s)	622
Ama87I	CYCGRG	1 cut(s)	433
AoxI	GGCC	1 cut(s)	429
ApaLI	GTGCAC	1 cut(s)	126
ApeKI	GCWGC	1 cut(s)	5
ApoI	RAATTY	2 cut(s)	382, 601
Asp700I	GAANNNNTTC	1 cut(s)	564
AspS9I	GGNCC	3 cut(s)	29, 149, 200
AsuHPI	GGTGA	1 cut(s)	476
AvaI	CYCGRG	1 cut(s)	433
AvaII	GGWCC	3 cut(s)	29, 149, 200
BaeGI	GKGCMC	1 cut(s)	130
Bbv12I	GWGCWC	1 cut(s)	130
BbvCI	CCTCAGC	1 cut(s)	231
BccI	CCATC	1 cut(s)	211
BceAI	ACGGC	1 cut(s)	293
BclI	TGATCA	1 cut(s)	523
BcoDI	GTCTC	1 cut(s)	512
BfaI	CTAG	2 cut(s)	551, 625
BfmI	CTRYAG	1 cut(s)	591
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
BmcAI	AGTACT	1 cut(s)	536
Bme18I	GGWCC	3 cut(s)	29, 149, 200
BmeT110I	CYCGRG	1 cut(s)	433
BmgT120I	GGNCC	3 cut(s)	29, 149, 200
BmiI	GGNNCC	1 cut(s)	101
BmsI	GCATC	1 cut(s)	280
BpmI	CTGGAG	1 cut(s)	27
Bpu10I	CCTNAGC	1 cut(s)	231
BsaJI	CCNNGG	2 cut(s)	53, 432
BsaXI	ACNNNNNCTCC	2 cut(s)	168, 198
Bsc4I	CCNNNNNNNGG	1 cut(s)	59
Bse1I	ACTGG	2 cut(s)	131, 217
BseDI	CCNNGG	2 cut(s)	53, 432
BseLI	CCNNNNNNNGG	1 cut(s)	59
BseMII	CTCAG	2 cut(s)	222, 522
BseNI	ACTGG	2 cut(s)	131, 217
BseRI	GAGGAG	1 cut(s)	508
BseSI	GKGCMC	1 cut(s)	130
BshFI	GGCC	1 cut(s)	431
BsiHKAI	GWGCWC	1 cut(s)	130
BsiHKCI	CYCGRG	1 cut(s)	433
BslI	CCNNNNNNNGG	1 cut(s)	59
BsmAI	GTCTC	1 cut(s)	512
BsnI	GGCC	1 cut(s)	431
BsoBI	CYCGRG	1 cut(s)	433
Bsp1286I	GDGCHC	1 cut(s)	130
Bsp1407I	TGTACA	1 cut(s)	277
Bsp143I	GATC	4 cut(s)	319, 466, 523, 614
Bsp19I	CCATGG	1 cut(s)	53
BspANI	GGCC	1 cut(s)	431
BspCNI	CTCAG	2 cut(s)	223, 523
BspLI	GGNNCC	1 cut(s)	101
BspPI	GGATC	1 cut(s)	622
BsrGI	TGTACA	1 cut(s)	277
BsrI	ACTGG	2 cut(s)	131, 217
BssECI	CCNNGG	2 cut(s)	53, 432
BssMI	GATC	4 cut(s)	319, 466, 523, 614
BssT1I	CCWWGG	1 cut(s)	53
Bst4CI	ACNGT	2 cut(s)	262, 539
Bst6I	CTCTTC	1 cut(s)	476
BstAUI	TGTACA	1 cut(s)	277
BstDEI	CTNAG	3 cut(s)	105, 231, 531
BstDSI	CCRYGG	1 cut(s)	53
BstKTI	GATC	4 cut(s)	322, 469, 526, 617
BstMAI	GTCTC	1 cut(s)	512
BstMBI	GATC	4 cut(s)	319, 466, 523, 614
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstSFI	CTRYAG	1 cut(s)	591
BstSLI	GKGCMC	1 cut(s)	130
BsuRI	GGCC	1 cut(s)	431
BtgI	CCRYGG	1 cut(s)	53
BtsI	GCAGTG	1 cut(s)	9
BtsIMutI	CAGTG	2 cut(s)	9, 210
Cfr13I	GGNCC	3 cut(s)	29, 149, 200
Csp6I	GTAC	2 cut(s)	278, 535
CviAII	CATG	5 cut(s)	54, 173, 275, 290, 368
CviJI	RGCY	9 cut(s)	5, 236, 335, 359, 377, 431, 548, 590, 611
CviKI_1	RGCY	9 cut(s)	5, 236, 335, 359, 377, 431, 548, 590, 611
CviQI	GTAC	2 cut(s)	278, 535
DdeI	CTNAG	3 cut(s)	105, 231, 531
DpnI	GATC	4 cut(s)	321, 468, 525, 616
DpnII	GATC	4 cut(s)	319, 466, 523, 614
DraI	TTTAAA	1 cut(s)	363
Eam1104I	CTCTTC	1 cut(s)	476
EarI	CTCTTC	1 cut(s)	476
Eco130I	CCWWGG	1 cut(s)	53
Eco147I	AGGCCT	1 cut(s)	431
Eco47I	GGWCC	3 cut(s)	29, 149, 200
Eco88I	CYCGRG	1 cut(s)	433
EcoRI	GAATTC	1 cut(s)	601
EcoT14I	CCWWGG	1 cut(s)	53
ErhI	CCWWGG	1 cut(s)	53
FaeI	CATG	5 cut(s)	57, 176, 278, 293, 371
FatI	CATG	5 cut(s)	53, 172, 274, 289, 367
FbaI	TGATCA	1 cut(s)	523
Fnu4HI	GCNGC	1 cut(s)	6
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	2 cut(s)	551, 625
GluI	GCNGC	1 cut(s)	6
GsuI	CTGGAG	1 cut(s)	27
HaeIII	GGCC	1 cut(s)	431
Hin1II	CATG	5 cut(s)	57, 176, 278, 293, 371
HphI	GGTGA	1 cut(s)	476
Hpy166II	GTNNAC	2 cut(s)	128, 579
Hpy188I	TCNGA	2 cut(s)	388, 532
Hpy188III	TCNNGA	6 cut(s)	44, 120, 323, 350, 435, 551
Hpy8I	GTNNAC	2 cut(s)	128, 579
HpyAV	CCTTC	2 cut(s)	421, 454
HpyCH4III	ACNGT	2 cut(s)	262, 539
HpyCH4V	TGCA	3 cut(s)	14, 128, 170
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	3 cut(s)	105, 231, 531
Hsp92II	CATG	5 cut(s)	57, 176, 278, 293, 371
Ksp22I	TGATCA	1 cut(s)	523
Kzo9I	GATC	4 cut(s)	319, 466, 523, 614
LmnI	GCTCC	1 cut(s)	46
LpnPI	CCDG	9 cut(s)	12, 57, 144, 198, 308, 345, 363, 430, 597
LweI	GCATC	1 cut(s)	280
MaeI	CTAG	2 cut(s)	551, 625
MaeIII	GTNAC	1 cut(s)	340
MalI	GATC	4 cut(s)	321, 468, 525, 616
MboI	GATC	4 cut(s)	319, 466, 523, 614
MboII	GAAGA	3 cut(s)	59, 129, 463
MhlI	GDGCHC	1 cut(s)	130
MluCI	AATT	3 cut(s)	78, 382, 601
MmeI	TCCRAC	1 cut(s)	466
MnlI	CCTC	8 cut(s)	31, 42, 185, 226, 388, 442, 450, 486
MroXI	GAANNNNTTC	1 cut(s)	564
MseI	TTAA	3 cut(s)	165, 362, 422
MslI	CAYNNNNRTG	1 cut(s)	294
MwoI	GCNNNNNNNGC	1 cut(s)	11
NcoI	CCATGG	1 cut(s)	53
NdeII	GATC	4 cut(s)	319, 466, 523, 614
NlaIII	CATG	5 cut(s)	57, 176, 278, 293, 371
NlaIV	GGNNCC	1 cut(s)	101
NmuCI	GTSAC	1 cut(s)	340
PceI	AGGCCT	1 cut(s)	431
PdmI	GAANNNNTTC	1 cut(s)	564
PkrI	GCNGC	1 cut(s)	7
PspN4I	GGNNCC	1 cut(s)	101
PspPI	GGNCC	3 cut(s)	29, 149, 200
RsaI	GTAC	2 cut(s)	279, 536
RsaNI	GTAC	2 cut(s)	278, 535
RseI	CAYNNNNRTG	1 cut(s)	294
SaqAI	TTAA	3 cut(s)	165, 362, 422
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	4 cut(s)	319, 466, 523, 614
Sau96I	GGNCC	3 cut(s)	29, 149, 200
ScaI	AGTACT	1 cut(s)	536
SduI	GDGCHC	1 cut(s)	130
SetI	ASST	5 cut(s)	337, 361, 513, 550, 613
SfaNI	GCATC	1 cut(s)	280
SfcI	CTRYAG	1 cut(s)	591
SinI	GGWCC	3 cut(s)	29, 149, 200
SmiMI	CAYNNNNRTG	1 cut(s)	294
Sse9I	AATT	3 cut(s)	78, 382, 601
SseBI	AGGCCT	1 cut(s)	431
SspI	AATATT	1 cut(s)	564
SspMI	CTAG	2 cut(s)	551, 625
StuI	AGGCCT	1 cut(s)	431
StyI	CCWWGG	1 cut(s)	53
TaaI	ACNGT	2 cut(s)	262, 539
TaqI	TCGA	1 cut(s)	34
TasI	AATT	3 cut(s)	78, 382, 601
TatI	WGTACW	2 cut(s)	277, 534
Tru1I	TTAA	3 cut(s)	165, 362, 422
Tru9I	TTAA	3 cut(s)	165, 362, 422
TscAI	CASTG	2 cut(s)	16, 217
TseFI	GTSAC	1 cut(s)	340
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	1 cut(s)	340
TspDTI	ATGAA	2 cut(s)	267, 463
TspRI	CASTG	2 cut(s)	16, 217
VneI	GTGCAC	1 cut(s)	126
VpaK11BI	GGWCC	3 cut(s)	29, 149, 200
XapI	RAATTY	2 cut(s)	382, 601
XbaI	TCTAGA	1 cut(s)	550
XcmI	CCANNNNNNNNNTGG	1 cut(s)	51
XmnI	GAANNNNTTC	1 cut(s)	564
XspI	CTAG	2 cut(s)	551, 625
ZrmI	AGTACT	1 cut(s)	536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.