Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002095.1

Orthogroup ID

OG0007551

Physical Location & Seq

Genomic Coordinates Reverse (-)

86337 .. 91406

Gene Structure 5070 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002095.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

atgtcaccctcgaccttcattctggaccctaagctcactcttctagagctcctcattgcttccttcatctacgtcctcggcttcttcggcattgactccgtccagttcgtcatcttacgcgcctccgactacgacggtgacgacgtcctcatcaactcccgctgctgccctcccccggccaaacccaaattcgatttcttctgcttgagggattcgacaaataaagctgtggaggtgaatgaaatgtggagaatccggcagaaagagctcgaatcagatgaaagacttaaaggcaagatgaaggatgagagaagaaatgacaggaatcgaaggatgagagcagaaatgacaggaatcctggaaatgaacatgaagccagtcatcatcaaattgaactacaatgacccattctcaacctcccgctacagccatgccatccttatatgtgtggaacttcctgatccctttggcgacagccatgccattgcccagaacatgaagccagtcatcatcaaattgaactacaatgacccattctcaacctcctgctacagccatgacatccttatatgtgttaccaggccaaaactcgaaggaactgttgcagatggagaagcctcaaattcagagagtagactgatttggtggtttcgtgatagattgaagaaggcctcgggagttttctgggaaagaaaaagggattgggagggagttttcaggaagattttggatatctctgggaggtgggcttgggtttgttttggaagaggttatttcctggaggcctaccgcctagtgaggaagggtgatctcttcattgtgagagttggaatgaggagtgtcgagttcaaggttattgagactgatcattctgagtactgtgttgtagctccagacattgaaatatttccaatagtgtttactaaagtggctacagataagaattctaaagctggatcaaatgtctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 ko05134 map04141 map05134

Pfam Domains

Protein Families

CDC48_2 CDC48_N Vps4_C

Protein Analysis

322

Amino Acids

37.24

Weight (kDa)

8.53

Isoelectric Point (pI)

36.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007551)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0478911
rosa_laevigata	RLG00000026511
rosa_multiflora	Rmu_sc0000389.1_g000007 Rmu_sc0000928.1_g000027 Rmu_sc0002095.1_g000017 Rmu_sc0002638.1_g000012 Rmu_sc0002758.1_g000004 Rmu_sc0009858.1_g000003
rosa_roxburghii	Rroxscaffold_1G00073970
rosa_rugosa	Rorug04G0136700 Rorug04G0136700 Rorug04G0136800
rosa_samantha	Rh1AG191900 Rh1CG176800 Rh2BG338400 Rh2CG545100 Rh3BG252700 Rh6AG125800 Rh7AG444700 Rh7CG089300
rosa_wichuraiana	Rw1G012980 Rw1G015750 Rw4G030500 Rw5G014980 Rw7G032850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	147
AccI	GTMKAC	1 cut(s)	634
AccII	CGCG	1 cut(s)	120
AciI	CCGC	3 cut(s)	160, 421, 790
AclWI	GGATC	2 cut(s)	455, 964
AcoI	YGGCCR	1 cut(s)	177
AcsI	RAATTY	3 cut(s)	188, 622, 943
AcyI	GRCGYC	1 cut(s)	144
AfaI	GTAC	1 cut(s)	878
AfiI	CCNNNNNNNGG	1 cut(s)	175
AgsI	TTSAA	5 cut(s)	394, 520, 664, 850, 902
AjnI	CCWGG	3 cut(s)	357, 578, 777
AjuI	GAANNNNNNNTTGG	6 cut(s)	173, 179, 205, 211, 685, 717
AluBI	AGCT	6 cut(s)	34, 49, 227, 268, 890, 953
AluI	AGCT	6 cut(s)	34, 49, 227, 268, 890, 953
Alw21I	GWGCWC	2 cut(s)	51, 270
Alw26I	GTCTC	1 cut(s)	854
AlwI	GGATC	2 cut(s)	455, 964
Ama87I	CYCGRG	1 cut(s)	673
AoxI	GGCC	4 cut(s)	177, 581, 669, 783
ApeKI	GCWGC	2 cut(s)	162, 165
ApoI	RAATTY	3 cut(s)	188, 622, 943
Asp700I	GAANNNNTTC	1 cut(s)	906
AspLEI	GCGC	1 cut(s)	122
AspS9I	GGNCC	1 cut(s)	25
AsuC2I	CCSGG	1 cut(s)	176
AsuHPI	GGTGA	3 cut(s)	149, 247, 818
AvaI	CYCGRG	1 cut(s)	673
AvaII	GGWCC	1 cut(s)	25
BanII	GRGCYC	2 cut(s)	51, 270
Bbv12I	GWGCWC	2 cut(s)	51, 270
BbvI	GCAGC	2 cut(s)	149, 152
BccI	CCATC	2 cut(s)	443, 602
BcgI	CGANNNNNNTGC	2 cut(s)	461, 495
BciT130I	CCWGG	3 cut(s)	359, 580, 779
BclI	TGATCA	1 cut(s)	865
BcnI	CCSGG	1 cut(s)	176
BcoDI	GTCTC	1 cut(s)	854
BfaI	CTAG	3 cut(s)	44, 794, 967
BfmI	CTRYAG	3 cut(s)	424, 550, 933
BisI	GCNGC	2 cut(s)	163, 166
BlsI	GCNGC	2 cut(s)	164, 167
BmcAI	AGTACT	1 cut(s)	878
Bme1390I	CCNGG	4 cut(s)	176, 359, 580, 779
Bme18I	GGWCC	1 cut(s)	25
BmeT110I	CYCGRG	1 cut(s)	673
BmgT120I	GGNCC	1 cut(s)	25
BmiI	GGNNCC	1 cut(s)	27
BmrFI	CCNGG	4 cut(s)	176, 359, 580, 779
BpmI	CTGGAG	2 cut(s)	800, 876
Bpu10I	CCTNAGC	1 cut(s)	30
BpuEI	CTTGAG	1 cut(s)	226
BpuMI	CCSGG	1 cut(s)	176
BsaHI	GRCGYC	1 cut(s)	144
BsaJI	CCNNGG	3 cut(s)	76, 174, 672
Bsc4I	CCNNNNNNNGG	1 cut(s)	175
Bse1I	ACTGG	3 cut(s)	103, 377, 503
Bse3DI	GCAATG	2 cut(s)	54, 483
BseBI	CCWGG	3 cut(s)	359, 580, 779
BseDI	CCNNGG	3 cut(s)	76, 174, 672
BseGI	GGATG	4 cut(s)	310, 339, 435, 561
BseLI	CCNNNNNNNGG	1 cut(s)	175
BseMI	GCAATG	2 cut(s)	54, 483
BseMII	CTCAG	1 cut(s)	864
BseNI	ACTGG	3 cut(s)	103, 377, 503
BseRI	GAGGAG	2 cut(s)	41, 850
BseXI	GCAGC	2 cut(s)	149, 152
Bsh1236I	CGCG	1 cut(s)	120
BshFI	GGCC	4 cut(s)	179, 583, 671, 785
BsiHKAI	GWGCWC	2 cut(s)	51, 270
BsiHKCI	CYCGRG	1 cut(s)	673
BsiSI	CCGG	2 cut(s)	176, 256
BslI	CCNNNNNNNGG	1 cut(s)	175
BsmAI	GTCTC	1 cut(s)	854
BsnI	GGCC	4 cut(s)	179, 583, 671, 785
BsoBI	CYCGRG	1 cut(s)	673
Bsp1286I	GDGCHC	2 cut(s)	51, 270
Bsp143I	GATC	4 cut(s)	460, 808, 865, 956
BspACI	CCGC	3 cut(s)	160, 421, 790
BspANI	GGCC	4 cut(s)	179, 583, 671, 785
BspCNI	CTCAG	1 cut(s)	865
BspFNI	CGCG	1 cut(s)	120
BspLI	GGNNCC	1 cut(s)	27
BspPI	GGATC	2 cut(s)	455, 964
BsrDI	GCAATG	2 cut(s)	54, 483
BsrI	ACTGG	3 cut(s)	103, 377, 503
BssECI	CCNNGG	3 cut(s)	76, 174, 672
BssMI	GATC	4 cut(s)	460, 808, 865, 956
BssNI	GRCGYC	1 cut(s)	144
Bst2UI	CCWGG	3 cut(s)	359, 580, 779
Bst4CI	ACNGT	3 cut(s)	137, 601, 881
Bst6I	CTCTTC	3 cut(s)	45, 760, 818
BstACI	GRCGYC	1 cut(s)	144
BstDEI	CTNAG	2 cut(s)	30, 873
BstF5I	GGATG	4 cut(s)	310, 339, 435, 561
BstFNI	CGCG	1 cut(s)	120
BstHHI	GCGC	1 cut(s)	122
BstKTI	GATC	4 cut(s)	463, 811, 868, 959
BstMAI	GTCTC	1 cut(s)	854
BstMBI	GATC	4 cut(s)	460, 808, 865, 956
BstMWI	GCNNNNNNNGC	2 cut(s)	87, 265
BstNI	CCWGG	3 cut(s)	359, 580, 779
BstSCI	CCNGG	4 cut(s)	174, 357, 578, 777
BstSFI	CTRYAG	3 cut(s)	424, 550, 933
BstUI	CGCG	1 cut(s)	120
BstV1I	GCAGC	2 cut(s)	149, 152
BsuRI	GGCC	4 cut(s)	179, 583, 671, 785
BtsCI	GGATG	4 cut(s)	310, 339, 435, 561
CfoI	GCGC	1 cut(s)	122
Cfr13I	GGNCC	1 cut(s)	25
Csp6I	GTAC	1 cut(s)	877
CviAII	CATG	5 cut(s)	370, 431, 479, 496, 557
CviQI	GTAC	1 cut(s)	877
DdeI	CTNAG	2 cut(s)	30, 873
DpnI	GATC	4 cut(s)	462, 810, 867, 958
DpnII	GATC	4 cut(s)	460, 808, 865, 956
EaeI	YGGCCR	1 cut(s)	177
Eam1104I	CTCTTC	3 cut(s)	45, 760, 818
EarI	CTCTTC	3 cut(s)	45, 760, 818
Ecl136II	GAGCTC	2 cut(s)	49, 268
Eco147I	AGGCCT	2 cut(s)	671, 785
Eco24I	GRGCYC	2 cut(s)	51, 270
Eco32I	GATATC	1 cut(s)	733
Eco47I	GGWCC	1 cut(s)	25
Eco53kI	GAGCTC	2 cut(s)	49, 268
Eco88I	CYCGRG	1 cut(s)	673
EcoICRI	GAGCTC	2 cut(s)	49, 268
EcoRI	GAATTC	1 cut(s)	943
EcoRII	CCWGG	3 cut(s)	357, 578, 777
EcoRV	GATATC	1 cut(s)	733
EcoT38I	GRGCYC	2 cut(s)	51, 270
FaeI	CATG	5 cut(s)	373, 434, 482, 499, 560
FaiI	YATR	9 cut(s)	371, 432, 443, 445, 480, 497, 558, 569, 571
FatI	CATG	5 cut(s)	369, 430, 478, 495, 556
FauI	CCCGC	2 cut(s)	167, 428
FbaI	TGATCA	1 cut(s)	865
FblI	GTMKAC	1 cut(s)	634
Fnu4HI	GCNGC	2 cut(s)	163, 166
FokI	GGATG	4 cut(s)	317, 346, 422, 548
FriOI	GRGCYC	2 cut(s)	51, 270
Fsp4HI	GCNGC	2 cut(s)	163, 166
FspBI	CTAG	3 cut(s)	44, 794, 967
GlaI	GCGC	1 cut(s)	121
GluI	GCNGC	2 cut(s)	163, 166
GsuI	CTGGAG	2 cut(s)	800, 876
HaeIII	GGCC	4 cut(s)	179, 583, 671, 785
HapII	CCGG	2 cut(s)	176, 256
HhaI	GCGC	1 cut(s)	122
Hin1I	GRCGYC	1 cut(s)	144
Hin1II	CATG	5 cut(s)	373, 434, 482, 499, 560
Hin6I	GCGC	1 cut(s)	120
HinP1I	GCGC	1 cut(s)	120
HinfI	GANTC	6 cut(s)	95, 212, 252, 272, 325, 354
HpaII	CCGG	2 cut(s)	176, 256
HphI	GGTGA	3 cut(s)	149, 247, 818
Hpy166II	GTNNAC	2 cut(s)	635, 921
Hpy188I	TCNGA	4 cut(s)	127, 277, 628, 874
Hpy188III	TCNNGA	7 cut(s)	23, 44, 458, 653, 675, 718, 893
Hpy8I	GTNNAC	2 cut(s)	635, 921
Hpy99I	CGWCG	2 cut(s)	137, 146
HpyAV	CCTTC	7 cut(s)	25, 73, 295, 324, 587, 661, 796
HpyCH4III	ACNGT	3 cut(s)	137, 601, 881
HpyCH4IV	ACGT	2 cut(s)	72, 144
HpyCH4V	TGCA	1 cut(s)	605
HpyF10VI	GCNNNNNNNGC	2 cut(s)	87, 265
HpyF3I	CTNAG	2 cut(s)	30, 873
HpySE526I	ACGT	2 cut(s)	72, 144
Hsp92I	GRCGYC	1 cut(s)	144
Hsp92II	CATG	5 cut(s)	373, 434, 482, 499, 560
HspAI	GCGC	1 cut(s)	120
Ksp22I	TGATCA	1 cut(s)	865
Kzo9I	GATC	4 cut(s)	460, 808, 865, 956
LmnI	GCTCC	2 cut(s)	54, 895
Lsp1109I	GCAGC	2 cut(s)	149, 152
MaeI	CTAG	3 cut(s)	44, 794, 967
MaeII	ACGT	2 cut(s)	72, 144
MaeIII	GTNAC	3 cut(s)	3, 137, 574
MalI	GATC	4 cut(s)	462, 810, 867, 958
MboI	GATC	4 cut(s)	460, 808, 865, 956
MboII	GAAGA	8 cut(s)	32, 76, 190, 324, 676, 733, 777, 805
MhlI	GDGCHC	2 cut(s)	51, 270
MluCI	AATT	5 cut(s)	188, 389, 515, 622, 943
MlyI	GAGTC	1 cut(s)	89
MmeI	TCCRAC	2 cut(s)	150, 808
MroXI	GAANNNNTTC	1 cut(s)	906
MseI	TTAA	1 cut(s)	288
MspA1I	CMGCKG	1 cut(s)	162
MspI	CCGG	2 cut(s)	176, 256
MspR9I	CCNGG	4 cut(s)	176, 359, 580, 779
MvaI	CCWGG	3 cut(s)	359, 580, 779
MvnI	CGCG	1 cut(s)	120
MwoI	GCNNNNNNNGC	2 cut(s)	87, 265
NciI	CCSGG	1 cut(s)	176
NdeII	GATC	4 cut(s)	460, 808, 865, 956
NlaIII	CATG	5 cut(s)	373, 434, 482, 499, 560
NlaIV	GGNNCC	1 cut(s)	27
NmeAIII	GCCGAG	1 cut(s)	57
NmuCI	GTSAC	2 cut(s)	3, 137
PceI	AGGCCT	2 cut(s)	671, 785
PcsI	WCGNNNNNNNCGW	2 cut(s)	138, 141
PdmI	GAANNNNTTC	1 cut(s)	906
PfeI	GAWTC	5 cut(s)	212, 252, 272, 325, 354
PflFI	GACNNNGTC	2 cut(s)	98, 143
PfoI	TCCNGGA	2 cut(s)	357, 777
PkrI	GCNGC	2 cut(s)	164, 167
PleI	GAGTC	1 cut(s)	89
PpsI	GAGTC	1 cut(s)	89
Psp124BI	GAGCTC	2 cut(s)	51, 270
Psp6I	CCWGG	3 cut(s)	357, 578, 777
PspGI	CCWGG	3 cut(s)	357, 578, 777
PspN4I	GGNNCC	1 cut(s)	27
PspPI	GGNCC	1 cut(s)	25
PsyI	GACNNNGTC	2 cut(s)	98, 143
RsaI	GTAC	1 cut(s)	878
RsaNI	GTAC	1 cut(s)	877
SacI	GAGCTC	2 cut(s)	51, 270
SaqAI	TTAA	1 cut(s)	288
SatI	GCNGC	2 cut(s)	163, 166
Sau3AI	GATC	4 cut(s)	460, 808, 865, 956
Sau96I	GGNCC	1 cut(s)	25
ScaI	AGTACT	1 cut(s)	878
SchI	GAGTC	1 cut(s)	89
ScrFI	CCNGG	4 cut(s)	176, 359, 580, 779
SduI	GDGCHC	2 cut(s)	51, 270
SfcI	CTRYAG	3 cut(s)	424, 550, 933
SinI	GGWCC	1 cut(s)	25
SmlI	CTYRAG	1 cut(s)	205
SmoI	CTYRAG	1 cut(s)	205
Sse9I	AATT	5 cut(s)	188, 389, 515, 622, 943
SseBI	AGGCCT	2 cut(s)	671, 785
SsiI	CCGC	3 cut(s)	160, 421, 790
SspI	AATATT	1 cut(s)	906
SspMI	CTAG	3 cut(s)	44, 794, 967
SstI	GAGCTC	2 cut(s)	51, 270
StuI	AGGCCT	2 cut(s)	671, 785
StyD4I	CCNGG	4 cut(s)	174, 357, 578, 777
TaaI	ACNGT	3 cut(s)	137, 601, 881
TaiI	ACGT	2 cut(s)	75, 147
TaqI	TCGA	7 cut(s)	11, 192, 215, 270, 328, 591, 843
TasI	AATT	5 cut(s)	188, 389, 515, 622, 943
TatI	WGTACW	1 cut(s)	876
TfiI	GAWTC	5 cut(s)	212, 252, 272, 325, 354
Tru1I	TTAA	1 cut(s)	288
Tru9I	TTAA	1 cut(s)	288
TseFI	GTSAC	2 cut(s)	3, 137
TseI	GCWGC	2 cut(s)	162, 165
Tsp45I	GTSAC	2 cut(s)	3, 137
TspDTI	ATGAA	9 cut(s)	7, 55, 255, 294, 314, 380, 386, 512, 805
TspGWI	ACGGA	1 cut(s)	88
Tth111I	GACNNNGTC	2 cut(s)	98, 143
VpaK11BI	GGWCC	1 cut(s)	25
XapI	RAATTY	3 cut(s)	188, 622, 943
XbaI	TCTAGA	1 cut(s)	43
XmiI	GTMKAC	1 cut(s)	634
XmnI	GAANNNNTTC	1 cut(s)	906
XspI	CTAG	3 cut(s)	44, 794, 967
ZraI	GACGTC	1 cut(s)	145
ZrmI	AGTACT	1 cut(s)	878

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.