Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002638.1

Orthogroup ID

OG0007551

Physical Location & Seq

Genomic Coordinates Reverse (-)

45626 .. 49488

Gene Structure 3863 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002638.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ctggatctcctcccaaactcgaccttcattctggaccctaagctcactcttctagagctcctcattgcttccttcatctacgtcctcggcttcttcggcatcgactccgtccagtccgtcatcttacgcgcctcccactacgacggtgacttcgccctccaaagagtttcgccgagctcgttgaaggacgaggtttataggatcttccgcaaggaaaagcttaagctcgccggtagaaaggggactgtaagagagtggcggcgatttggcactagtggcttcagagaacaaccggaggattcgattatgtcagcttcagtgaaagagtttgattcaactcggtgggtgctacactctaaccagctcggttatttcctggaggcctaccgcctagtgaggaagggtgatctcttcattgtgagagttggaatgaggagtgtcgagttcaaggttattgagactaatcattctgagtactgtgttgtagctccagacattgaaatatttccaatagtgtttactaaagtggctacagataagaattctaaagctggatcaaatgtctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 ko05134 map04141 map05134

Pfam Domains

Protein Families

CDC48_2 CDC48_N Vps4_C

Protein Analysis

188

Amino Acids

21.46

Weight (kDa)

8.97

Isoelectric Point (pI)

39.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007551)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0478911
rosa_laevigata	RLG00000026511
rosa_multiflora	Rmu_sc0000389.1_g000007 Rmu_sc0000928.1_g000027 Rmu_sc0002095.1_g000017 Rmu_sc0002638.1_g000012 Rmu_sc0002758.1_g000004 Rmu_sc0009858.1_g000003
rosa_roxburghii	Rroxscaffold_1G00073970
rosa_rugosa	Rorug04G0136700 Rorug04G0136700 Rorug04G0136800
rosa_samantha	Rh1AG191900 Rh1CG176800 Rh2BG338400 Rh2CG545100 Rh3BG252700 Rh6AG125800 Rh7AG444700 Rh7CG089300
rosa_wichuraiana	Rw1G012980 Rw1G015750 Rw4G030500 Rw5G014980 Rw7G032850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	129
AciI	CCGC	3 cut(s)	208, 259, 388
AclWI	GGATC	3 cut(s)	12, 209, 562
AcsI	RAATTY	1 cut(s)	541
AcuI	CTGAAG	2 cut(s)	265, 300
AfaI	GTAC	1 cut(s)	476
AflII	CTTAAG	1 cut(s)	221
AgsI	TTSAA	4 cut(s)	184, 336, 448, 500
AhlI	ACTAGT	1 cut(s)	272
AjnI	CCWGG	1 cut(s)	375
AluBI	AGCT	9 cut(s)	43, 58, 177, 220, 226, 314, 364, 488, 551
AluI	AGCT	9 cut(s)	43, 58, 177, 220, 226, 314, 364, 488, 551
Alw21I	GWGCWC	2 cut(s)	60, 179
Alw26I	GTCTC	1 cut(s)	452
AlwI	GGATC	3 cut(s)	12, 209, 562
AoxI	GGCC	1 cut(s)	381
ApoI	RAATTY	1 cut(s)	541
ArsI	GACNNNNNNTTYG	2 cut(s)	134, 166
Asp700I	GAANNNNTTC	1 cut(s)	504
AspLEI	GCGC	1 cut(s)	131
AspS9I	GGNCC	1 cut(s)	34
AsuHPI	GGTGA	2 cut(s)	158, 416
AvaII	GGWCC	1 cut(s)	34
BanII	GRGCYC	2 cut(s)	60, 179
Bbv12I	GWGCWC	2 cut(s)	60, 179
BciT130I	CCWGG	1 cut(s)	377
BcoDI	GTCTC	1 cut(s)	452
BcuI	ACTAGT	1 cut(s)	272
BfaI	CTAG	4 cut(s)	53, 273, 392, 565
BfmI	CTRYAG	1 cut(s)	531
BfrI	CTTAAG	1 cut(s)	221
BisI	GCNGC	1 cut(s)	260
BlsI	GCNGC	1 cut(s)	261
BmcAI	AGTACT	1 cut(s)	476
Bme1390I	CCNGG	1 cut(s)	377
Bme18I	GGWCC	1 cut(s)	34
BmgT120I	GGNCC	1 cut(s)	34
BmiI	GGNNCC	1 cut(s)	36
BmrFI	CCNGG	1 cut(s)	377
BmsI	GCATC	1 cut(s)	108
BpmI	CTGGAG	2 cut(s)	398, 474
Bpu10I	CCTNAGC	1 cut(s)	39
BsaJI	CCNNGG	1 cut(s)	85
BsaWI	WCCGGW	1 cut(s)	292
Bse118I	RCCGGY	1 cut(s)	230
Bse1I	ACTGG	1 cut(s)	112
Bse3DI	GCAATG	1 cut(s)	63
BseBI	CCWGG	1 cut(s)	377
BseDI	CCNNGG	1 cut(s)	85
BseMI	GCAATG	1 cut(s)	63
BseMII	CTCAG	1 cut(s)	462
BseNI	ACTGG	1 cut(s)	112
BseRI	GAGGAG	2 cut(s)	50, 448
Bsh1236I	CGCG	1 cut(s)	129
BshFI	GGCC	1 cut(s)	383
BsiHKAI	GWGCWC	2 cut(s)	60, 179
BsiSI	CCGG	2 cut(s)	231, 293
BslFI	GGGAC	1 cut(s)	256
BsmAI	GTCTC	1 cut(s)	452
BsmFI	GGGAC	1 cut(s)	256
BsnI	GGCC	1 cut(s)	383
Bsp1286I	GDGCHC	2 cut(s)	60, 179
Bsp143I	GATC	4 cut(s)	4, 201, 406, 554
BspACI	CCGC	3 cut(s)	208, 259, 388
BspANI	GGCC	1 cut(s)	383
BspCNI	CTCAG	1 cut(s)	463
BspFNI	CGCG	1 cut(s)	129
BspLI	GGNNCC	1 cut(s)	36
BspPI	GGATC	3 cut(s)	12, 209, 562
BspTI	CTTAAG	1 cut(s)	221
BsrDI	GCAATG	1 cut(s)	63
BsrFI	RCCGGY	1 cut(s)	230
BsrI	ACTGG	1 cut(s)	112
BssAI	RCCGGY	1 cut(s)	230
BssECI	CCNNGG	1 cut(s)	85
BssMI	GATC	4 cut(s)	4, 201, 406, 554
Bst2UI	CCWGG	1 cut(s)	377
Bst4CI	ACNGT	3 cut(s)	146, 247, 479
Bst6I	CTCTTC	2 cut(s)	54, 416
BstAFI	CTTAAG	1 cut(s)	221
BstC8I	GCNNGC	1 cut(s)	228
BstDEI	CTNAG	2 cut(s)	39, 471
BstFNI	CGCG	1 cut(s)	129
BstHHI	GCGC	1 cut(s)	131
BstKTI	GATC	4 cut(s)	7, 204, 409, 557
BstMAI	GTCTC	1 cut(s)	452
BstMBI	GATC	4 cut(s)	4, 201, 406, 554
BstMWI	GCNNNNNNNGC	2 cut(s)	96, 276
BstNI	CCWGG	1 cut(s)	377
BstSCI	CCNGG	1 cut(s)	375
BstSFI	CTRYAG	1 cut(s)	531
BstUI	CGCG	1 cut(s)	129
BstX2I	RGATCY	2 cut(s)	4, 201
BstYI	RGATCY	2 cut(s)	4, 201
BsuRI	GGCC	1 cut(s)	383
BtsIMutI	CAGTG	1 cut(s)	324
Cac8I	GCNNGC	1 cut(s)	228
CfoI	GCGC	1 cut(s)	131
Cfr10I	RCCGGY	1 cut(s)	230
Cfr13I	GGNCC	1 cut(s)	34
Csp6I	GTAC	1 cut(s)	475
CviQI	GTAC	1 cut(s)	475
DdeI	CTNAG	2 cut(s)	39, 471
DpnI	GATC	4 cut(s)	6, 203, 408, 556
DpnII	GATC	4 cut(s)	4, 201, 406, 554
Eam1104I	CTCTTC	2 cut(s)	54, 416
EarI	CTCTTC	2 cut(s)	54, 416
Ecl136II	GAGCTC	2 cut(s)	58, 177
Eco147I	AGGCCT	1 cut(s)	383
Eco24I	GRGCYC	2 cut(s)	60, 179
Eco47I	GGWCC	1 cut(s)	34
Eco53kI	GAGCTC	2 cut(s)	58, 177
Eco57I	CTGAAG	2 cut(s)	265, 300
EcoICRI	GAGCTC	2 cut(s)	58, 177
EcoRI	GAATTC	1 cut(s)	541
EcoRII	CCWGG	1 cut(s)	375
EcoT38I	GRGCYC	2 cut(s)	60, 179
FaiI	YATR	2 cut(s)	198, 308
FaqI	GGGAC	1 cut(s)	256
Fnu4HI	GCNGC	1 cut(s)	260
FriOI	GRGCYC	2 cut(s)	60, 179
Fsp4HI	GCNGC	1 cut(s)	260
FspBI	CTAG	4 cut(s)	53, 273, 392, 565
GlaI	GCGC	1 cut(s)	130
GluI	GCNGC	1 cut(s)	260
GsuI	CTGGAG	2 cut(s)	398, 474
HaeIII	GGCC	1 cut(s)	383
HapII	CCGG	2 cut(s)	231, 293
HhaI	GCGC	1 cut(s)	131
Hin6I	GCGC	1 cut(s)	129
HinP1I	GCGC	1 cut(s)	129
HindIII	AAGCTT	1 cut(s)	218
HinfI	GANTC	3 cut(s)	104, 299, 332
HpaII	CCGG	2 cut(s)	231, 293
HphI	GGTGA	2 cut(s)	158, 416
Hpy166II	GTNNAC	1 cut(s)	519
Hpy188I	TCNGA	2 cut(s)	284, 472
Hpy188III	TCNNGA	3 cut(s)	32, 53, 491
Hpy8I	GTNNAC	1 cut(s)	519
Hpy99I	CGWCG	1 cut(s)	146
HpyAV	CCTTC	4 cut(s)	34, 82, 178, 394
HpyCH4III	ACNGT	3 cut(s)	146, 247, 479
HpyCH4IV	ACGT	1 cut(s)	81
HpyF10VI	GCNNNNNNNGC	2 cut(s)	96, 276
HpyF3I	CTNAG	2 cut(s)	39, 471
HpySE526I	ACGT	1 cut(s)	81
HspAI	GCGC	1 cut(s)	129
Kzo9I	GATC	4 cut(s)	4, 201, 406, 554
LmnI	GCTCC	2 cut(s)	63, 493
LpnPI	CCDG	9 cut(s)	17, 125, 244, 306, 362, 374, 389, 504, 537
LweI	GCATC	1 cut(s)	108
MaeI	CTAG	4 cut(s)	53, 273, 392, 565
MaeII	ACGT	1 cut(s)	81
MaeIII	GTNAC	1 cut(s)	146
MalI	GATC	4 cut(s)	6, 203, 408, 556
MboI	GATC	4 cut(s)	4, 201, 406, 554
MboII	GAAGA	4 cut(s)	41, 85, 196, 403
MflI	RGATCY	2 cut(s)	4, 201
MhlI	GDGCHC	2 cut(s)	60, 179
MluCI	AATT	1 cut(s)	541
MlyI	GAGTC	1 cut(s)	98
MmeI	TCCRAC	1 cut(s)	406
MroXI	GAANNNNTTC	1 cut(s)	504
MseI	TTAA	1 cut(s)	222
MspCI	CTTAAG	1 cut(s)	221
MspI	CCGG	2 cut(s)	231, 293
MspR9I	CCNGG	1 cut(s)	377
MvaI	CCWGG	1 cut(s)	377
MvnI	CGCG	1 cut(s)	129
MwoI	GCNNNNNNNGC	2 cut(s)	96, 276
NdeII	GATC	4 cut(s)	4, 201, 406, 554
NlaIV	GGNNCC	1 cut(s)	36
NmeAIII	GCCGAG	2 cut(s)	66, 198
NmuCI	GTSAC	1 cut(s)	146
PceI	AGGCCT	1 cut(s)	383
PcsI	WCGNNNNNNNCGW	1 cut(s)	176
PdmI	GAANNNNTTC	1 cut(s)	504
PfeI	GAWTC	2 cut(s)	299, 332
PflFI	GACNNNGTC	1 cut(s)	107
PfoI	TCCNGGA	1 cut(s)	375
PkrI	GCNGC	1 cut(s)	261
PleI	GAGTC	1 cut(s)	98
PpsI	GAGTC	1 cut(s)	98
Psp124BI	GAGCTC	2 cut(s)	60, 179
Psp6I	CCWGG	1 cut(s)	375
PspGI	CCWGG	1 cut(s)	375
PspN4I	GGNNCC	1 cut(s)	36
PspPI	GGNCC	1 cut(s)	34
PsuI	RGATCY	2 cut(s)	4, 201
PsyI	GACNNNGTC	1 cut(s)	107
RsaI	GTAC	1 cut(s)	476
RsaNI	GTAC	1 cut(s)	475
SacI	GAGCTC	2 cut(s)	60, 179
SaqAI	TTAA	1 cut(s)	222
SatI	GCNGC	1 cut(s)	260
Sau3AI	GATC	4 cut(s)	4, 201, 406, 554
Sau96I	GGNCC	1 cut(s)	34
ScaI	AGTACT	1 cut(s)	476
SchI	GAGTC	1 cut(s)	98
ScrFI	CCNGG	1 cut(s)	377
SduI	GDGCHC	2 cut(s)	60, 179
SfaNI	GCATC	1 cut(s)	108
SfcI	CTRYAG	1 cut(s)	531
SinI	GGWCC	1 cut(s)	34
SmlI	CTYRAG	1 cut(s)	221
SmoI	CTYRAG	1 cut(s)	221
SpeI	ACTAGT	1 cut(s)	272
Sse9I	AATT	1 cut(s)	541
SseBI	AGGCCT	1 cut(s)	383
SsiI	CCGC	3 cut(s)	208, 259, 388
SspI	AATATT	1 cut(s)	504
SspMI	CTAG	4 cut(s)	53, 273, 392, 565
SstI	GAGCTC	2 cut(s)	60, 179
StuI	AGGCCT	1 cut(s)	383
StyD4I	CCNGG	1 cut(s)	375
TaaI	ACNGT	3 cut(s)	146, 247, 479
TaiI	ACGT	1 cut(s)	84
TaqI	TCGA	4 cut(s)	20, 102, 302, 441
TasI	AATT	1 cut(s)	541
TatI	WGTACW	1 cut(s)	474
TauI	GCSGC	1 cut(s)	262
TfiI	GAWTC	2 cut(s)	299, 332
Tru1I	TTAA	1 cut(s)	222
Tru9I	TTAA	1 cut(s)	222
TscAI	CASTG	1 cut(s)	324
TseFI	GTSAC	1 cut(s)	146
Tsp45I	GTSAC	1 cut(s)	146
TspDTI	ATGAA	3 cut(s)	16, 64, 403
TspGWI	ACGGA	2 cut(s)	97, 106
TspRI	CASTG	1 cut(s)	324
Tth111I	GACNNNGTC	1 cut(s)	107
Vha464I	CTTAAG	1 cut(s)	221
VpaK11BI	GGWCC	1 cut(s)	34
XapI	RAATTY	1 cut(s)	541
XbaI	TCTAGA	1 cut(s)	52
XmnI	GAANNNNTTC	1 cut(s)	504
XspI	CTAG	4 cut(s)	53, 273, 392, 565
ZrmI	AGTACT	1 cut(s)	476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.