Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0007551

Physical Location & Seq

Genomic Coordinates Reverse (-)

24442735 .. 24451418

Gene Structure 8684 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG252700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGCGAGTGGCTTCAGAGAACGACTGGGAGTGCTACGAGTCGCCGGTCGGAGACGAAGTAATCTTTATAGAGTTTAAGAAGCTCGAGTTTGTGGGTGGGTTGAAGAACTGTGAATTTTTGGAGAAAGTCAAGTCCAGCTTGGGTTATTTCCTGGAGGCCTACCGCCTAGTAAGGAAGGGTGATCTCTTCATTGTGAGAGTTGGAATGAGGAGTGTCGAGTTCAAGGTTATTGAGACTGATCATTCTGAATACTGTGTTGTAGCTCCAGACATTGAAATATTTCCAATAGGGTTTACTAAAGTGGCTACAGATAAGAATTCTAAAGCTGGATCAAATGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005794 GO:0005829 GO:0005886 GO:0008150 GO:0009893 GO:0009894 GO:0009896 GO:0010035 GO:0010038 GO:0010604 GO:0012505 GO:0016020 GO:0019222 GO:0031974 GO:0031981 GO:0042176 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0046686 GO:0048518 GO:0050789 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0070013 GO:0071944 GO:0080090

KEGG Pathways

Metabolic & Signaling

ko04141 ko05134 map04141 map05134

Pfam Domains

Protein Families

AAA CDC48_2 CDC48_N Vps4_C

Protein Analysis

113

Amino Acids

12.85

Weight (kDa)

5.06

Isoelectric Point (pI)

30.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007551)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0478911
rosa_laevigata	RLG00000026511
rosa_multiflora	Rmu_sc0000389.1_g000007 Rmu_sc0000928.1_g000027 Rmu_sc0002095.1_g000017 Rmu_sc0002638.1_g000012 Rmu_sc0002758.1_g000004 Rmu_sc0009858.1_g000003
rosa_roxburghii	Rroxscaffold_1G00073970
rosa_rugosa	Rorug04G0136700 Rorug04G0136700 Rorug04G0136800
rosa_samantha	Rh1AG191900 Rh1CG176800 Rh2BG338400 Rh2CG545100 Rh3BG252700 Rh6AG125800 Rh7AG444700 Rh7CG089300
rosa_wichuraiana	Rw1G012980 Rw1G015750 Rw4G030500 Rw5G014980 Rw7G032850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	163
AclWI	GGATC	1 cut(s)	337
AcsI	RAATTY	2 cut(s)	113, 316
AgsI	TTSAA	3 cut(s)	103, 223, 275
AjnI	CCWGG	1 cut(s)	150
AluBI	AGCT	4 cut(s)	82, 138, 263, 326
AluI	AGCT	4 cut(s)	82, 138, 263, 326
Alw26I	GTCTC	2 cut(s)	45, 227
AlwI	GGATC	1 cut(s)	337
Ama87I	CYCGRG	1 cut(s)	83
AoxI	GGCC	1 cut(s)	156
ApoI	RAATTY	2 cut(s)	113, 316
Asp700I	GAANNNNTTC	1 cut(s)	279
AsuHPI	GGTGA	1 cut(s)	191
AvaI	CYCGRG	1 cut(s)	83
BciT130I	CCWGG	1 cut(s)	152
BclI	TGATCA	1 cut(s)	238
BcoDI	GTCTC	2 cut(s)	45, 227
BfaI	CTAG	2 cut(s)	167, 340
BfmI	CTRYAG	1 cut(s)	306
Bme1390I	CCNGG	1 cut(s)	152
BmeT110I	CYCGRG	1 cut(s)	83
BmrFI	CCNGG	1 cut(s)	152
BmrI	ACTGGG	1 cut(s)	34
BmuI	ACTGGG	1 cut(s)	34
BpmI	CTGGAG	2 cut(s)	173, 249
BsaXI	ACNNNNNCTCC	2 cut(s)	42, 72
Bse118I	RCCGGY	1 cut(s)	43
Bse1I	ACTGG	1 cut(s)	29
BseBI	CCWGG	1 cut(s)	152
BseNI	ACTGG	1 cut(s)	29
BseRI	GAGGAG	1 cut(s)	223
Bsh1285I	CGRYCG	1 cut(s)	48
BshFI	GGCC	1 cut(s)	158
BsiEI	CGRYCG	1 cut(s)	48
BsiHKCI	CYCGRG	1 cut(s)	83
BsiSI	CCGG	1 cut(s)	44
BsmAI	GTCTC	2 cut(s)	45, 227
BsmBI	CGTCTC	1 cut(s)	45
BsnI	GGCC	1 cut(s)	158
BsoBI	CYCGRG	1 cut(s)	83
Bsp143I	GATC	3 cut(s)	181, 238, 329
BspACI	CCGC	1 cut(s)	163
BspANI	GGCC	1 cut(s)	158
BspPI	GGATC	1 cut(s)	337
BsrFI	RCCGGY	1 cut(s)	43
BsrI	ACTGG	1 cut(s)	29
BssAI	RCCGGY	1 cut(s)	43
BssMI	GATC	3 cut(s)	181, 238, 329
Bst2UI	CCWGG	1 cut(s)	152
Bst4CI	ACNGT	2 cut(s)	110, 254
Bst6I	CTCTTC	1 cut(s)	191
BstKTI	GATC	3 cut(s)	184, 241, 332
BstMAI	GTCTC	2 cut(s)	45, 227
BstMBI	GATC	3 cut(s)	181, 238, 329
BstMCI	CGRYCG	1 cut(s)	48
BstNI	CCWGG	1 cut(s)	152
BstSCI	CCNGG	1 cut(s)	150
BstSFI	CTRYAG	1 cut(s)	306
BsuRI	GGCC	1 cut(s)	158
Cfr10I	RCCGGY	1 cut(s)	43
CviJI	RGCY	7 cut(s)	11, 82, 138, 158, 263, 305, 326
CviKI_1	RGCY	7 cut(s)	11, 82, 138, 158, 263, 305, 326
DpnI	GATC	3 cut(s)	183, 240, 331
DpnII	GATC	3 cut(s)	181, 238, 329
Eam1104I	CTCTTC	1 cut(s)	191
EarI	CTCTTC	1 cut(s)	191
Eco147I	AGGCCT	1 cut(s)	158
Eco88I	CYCGRG	1 cut(s)	83
EcoRI	GAATTC	1 cut(s)	316
EcoRII	CCWGG	1 cut(s)	150
Esp3I	CGTCTC	1 cut(s)	45
FaiI	YATR	1 cut(s)	68
FalI	AAGNNNNNCTT	2 cut(s)	122, 154
FbaI	TGATCA	1 cut(s)	238
FspBI	CTAG	2 cut(s)	167, 340
GsuI	CTGGAG	2 cut(s)	173, 249
HaeIII	GGCC	1 cut(s)	158
HapII	CCGG	1 cut(s)	44
HinfI	GANTC	1 cut(s)	38
HpaII	CCGG	1 cut(s)	44
HphI	GGTGA	1 cut(s)	191
Hpy166II	GTNNAC	1 cut(s)	294
Hpy188I	TCNGA	3 cut(s)	16, 50, 247
Hpy188III	TCNNGA	1 cut(s)	266
Hpy8I	GTNNAC	1 cut(s)	294
HpyAV	CCTTC	1 cut(s)	169
HpyCH4III	ACNGT	2 cut(s)	110, 254
Ksp22I	TGATCA	1 cut(s)	238
Kzo9I	GATC	3 cut(s)	181, 238, 329
LmnI	GCTCC	1 cut(s)	268
LpnPI	CCDG	7 cut(s)	10, 57, 137, 148, 164, 279, 312
MaeI	CTAG	2 cut(s)	167, 340
MalI	GATC	3 cut(s)	183, 240, 331
MboI	GATC	3 cut(s)	181, 238, 329
MboII	GAAGA	2 cut(s)	115, 178
MluCI	AATT	2 cut(s)	113, 316
MlyI	GAGTC	1 cut(s)	47
MmeI	TCCRAC	2 cut(s)	28, 181
MnlI	CCTC	2 cut(s)	148, 201
MroXI	GAANNNNTTC	1 cut(s)	279
MseI	TTAA	1 cut(s)	75
MspI	CCGG	1 cut(s)	44
MspR9I	CCNGG	1 cut(s)	152
MvaI	CCWGG	1 cut(s)	152
NdeII	GATC	3 cut(s)	181, 238, 329
PaeR7I	CTCGAG	1 cut(s)	83
PceI	AGGCCT	1 cut(s)	158
PdmI	GAANNNNTTC	1 cut(s)	279
PfoI	TCCNGGA	1 cut(s)	150
PleI	GAGTC	1 cut(s)	46
PpsI	GAGTC	1 cut(s)	46
Psp6I	CCWGG	1 cut(s)	150
PspGI	CCWGG	1 cut(s)	150
PspXI	VCTCGAGB	1 cut(s)	83
SaqAI	TTAA	1 cut(s)	75
Sau3AI	GATC	3 cut(s)	181, 238, 329
SchI	GAGTC	1 cut(s)	47
ScrFI	CCNGG	1 cut(s)	152
SetI	ASST	5 cut(s)	84, 140, 228, 265, 328
SfcI	CTRYAG	1 cut(s)	306
Sfr274I	CTCGAG	1 cut(s)	83
SlaI	CTCGAG	1 cut(s)	83
SmlI	CTYRAG	1 cut(s)	83
SmoI	CTYRAG	1 cut(s)	83
Sse9I	AATT	2 cut(s)	113, 316
SseBI	AGGCCT	1 cut(s)	158
SsiI	CCGC	1 cut(s)	163
SspI	AATATT	1 cut(s)	279
SspMI	CTAG	2 cut(s)	167, 340
StuI	AGGCCT	1 cut(s)	158
StyD4I	CCNGG	1 cut(s)	150
TaaI	ACNGT	2 cut(s)	110, 254
TaqI	TCGA	2 cut(s)	84, 216
TasI	AATT	2 cut(s)	113, 316
Tru1I	TTAA	1 cut(s)	75
Tru9I	TTAA	1 cut(s)	75
TspDTI	ATGAA	1 cut(s)	178
XapI	RAATTY	2 cut(s)	113, 316
XhoI	CTCGAG	1 cut(s)	83
XmnI	GAANNNNTTC	1 cut(s)	279
XspI	CTAG	2 cut(s)	167, 340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.