Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000447.1

Orthogroup ID

OG0006991

Physical Location & Seq

Genomic Coordinates Reverse (-)

77871 .. 78377

Gene Structure 507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

atgattcgccacatttggaatcttgtttcaggttcctccaacttatggaccaattgggtgaaagtttatttactaaggaataattctttctggaatgctcctcatcctgccgtgtgttcttggaattggagaaaaatgcttaaaattagggagctttgtcgatctttctttgctaatatcattggtgatggtcgtactacttctttgtggtttgataattggcaccctcttggtcctcttactcttagatggtcatctaatatcattgctgatcctgctctctctacctctgccatggtcagtgatgttatctataataataattggagatggccttctctctctcacgagttactagagattcgtgtttcattgaccaaaatcattcctaactctgaggttagtgattatgttcgatggactctttcttcgaatggggtttattctacttcctctgcatggaatgcccttcgtttttctaggcctattgttccttggtatcattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

DUF4283 Exo_endo_phos RVT_1 zf-RVT

Protein Analysis

168

Amino Acids

19.68

Weight (kDa)

9.93

Isoelectric Point (pI)

50.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006991)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G40390 AT1G43760
fragaria_vesca	FvH4_2g05581 FvH4_3g29012
rosa_laevigata	RLG00000017307
rosa_multiflora	Rmu_sc0000447.1_g000013 Rmu_sc0000647.1_g000017 Rmu_sc0001616.1_g000010 Rmu_sc0004932.1_g000002 Rmu_sc0032291.1_g000001 Rmu_sc0035385.1_g000001
rosa_roxburghii	Rroxscaffold_1G00031810
rosa_samantha	Rh3BG325500 Rh3BG325600 Rh3BG372000 Rh3BG372200 Rh4CG249400 Rh5CG378300 Rh6BG242500 Rh6CG069600 Rh6DG066600 Rh7CG451600 Rh7CG469200 Rh7DG357300
rosa_wichuraiana	Rw4G014200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	222
AccB7I	CCANNNNNTGG	1 cut(s)	45
AclWI	GGATC	1 cut(s)	266
AfaI	GTAC	1 cut(s)	196
AfiI	CCNNNNNNNGG	2 cut(s)	45, 459
AluBI	AGCT	1 cut(s)	154
AluI	AGCT	1 cut(s)	154
AlwI	GGATC	1 cut(s)	266
AoxI	GGCC	2 cut(s)	332, 482
ArsI	GACNNNNNNTTYG	2 cut(s)	412, 444
AspS9I	GGNCC	2 cut(s)	48, 233
AsuHPI	GGTGA	2 cut(s)	70, 197
AsuII	TTCGAA	1 cut(s)	431
AvaII	GGWCC	2 cut(s)	48, 233
BanI	GGYRCC	1 cut(s)	222
BauI	CACGAG	1 cut(s)	347
BccI	CCATC	4 cut(s)	182, 243, 324, 411
BceAI	ACGGC	1 cut(s)	95
BfaI	CTAG	2 cut(s)	356, 480
Bme18I	GGWCC	2 cut(s)	48, 233
BmgT120I	GGNCC	2 cut(s)	48, 233
BmiI	GGNNCC	2 cut(s)	34, 224
Bpu14I	TTCGAA	1 cut(s)	431
BsaBI	GATNNNNATC	1 cut(s)	253
BsaJI	CCNNGG	2 cut(s)	294, 494
Bsc4I	CCNNNNNNNGG	2 cut(s)	45, 459
Bse3DI	GCAATG	1 cut(s)	264
Bse8I	GATNNNNATC	1 cut(s)	253
BseDI	CCNNGG	2 cut(s)	294, 494
BseGI	GGATG	1 cut(s)	103
BseJI	GATNNNNATC	1 cut(s)	253
BseLI	CCNNNNNNNGG	2 cut(s)	45, 459
BseMI	GCAATG	1 cut(s)	264
BseMII	CTCAG	1 cut(s)	387
BseRI	GAGGAG	1 cut(s)	90
BshFI	GGCC	2 cut(s)	334, 484
BshNI	GGYRCC	1 cut(s)	222
BslI	CCNNNNNNNGG	2 cut(s)	45, 459
BsmI	GAATGC	2 cut(s)	100, 469
BsnI	GGCC	2 cut(s)	334, 484
Bsp119I	TTCGAA	1 cut(s)	431
Bsp143I	GATC	2 cut(s)	161, 271
Bsp19I	CCATGG	1 cut(s)	294
BspANI	GGCC	2 cut(s)	334, 484
BspCNI	CTCAG	1 cut(s)	388
BspLI	GGNNCC	2 cut(s)	34, 224
BspPI	GGATC	1 cut(s)	266
BspT104I	TTCGAA	1 cut(s)	431
BspT107I	GGYRCC	1 cut(s)	222
BsrDI	GCAATG	1 cut(s)	264
BssECI	CCNNGG	2 cut(s)	294, 494
BssMI	GATC	2 cut(s)	161, 271
BssSI	CACGAG	1 cut(s)	347
BssT1I	CCWWGG	2 cut(s)	294, 494
Bst2BI	CACGAG	1 cut(s)	347
BstAPI	GCANNNNNTGC	1 cut(s)	464
BstBI	TTCGAA	1 cut(s)	431
BstDEI	CTNAG	3 cut(s)	74, 245, 396
BstDSI	CCRYGG	1 cut(s)	294
BstF5I	GGATG	1 cut(s)	103
BstKTI	GATC	2 cut(s)	164, 274
BstMBI	GATC	2 cut(s)	161, 271
BstMWI	GCNNNNNNNGC	2 cut(s)	275, 464
BsuRI	GGCC	2 cut(s)	334, 484
BtgI	CCRYGG	1 cut(s)	294
BtsCI	GGATG	1 cut(s)	103
BtsIMutI	CAGTG	1 cut(s)	307
Cfr13I	GGNCC	2 cut(s)	48, 233
Csp6I	GTAC	1 cut(s)	195
CviAII	CATG	2 cut(s)	295, 459
CviJI	RGCY	3 cut(s)	154, 334, 484
CviKI_1	RGCY	3 cut(s)	154, 334, 484
CviQI	GTAC	1 cut(s)	195
DdeI	CTNAG	3 cut(s)	74, 245, 396
DpnI	GATC	2 cut(s)	163, 273
DpnII	GATC	2 cut(s)	161, 271
Eco130I	CCWWGG	2 cut(s)	294, 494
Eco147I	AGGCCT	1 cut(s)	484
Eco47I	GGWCC	2 cut(s)	48, 233
EcoT14I	CCWWGG	2 cut(s)	294, 494
ErhI	CCWWGG	2 cut(s)	294, 494
FaeI	CATG	2 cut(s)	298, 462
FaiI	YATR	5 cut(s)	46, 296, 315, 411, 460
FatI	CATG	2 cut(s)	294, 458
FokI	GGATG	1 cut(s)	90
FspBI	CTAG	2 cut(s)	356, 480
HaeIII	GGCC	2 cut(s)	334, 484
Hin1II	CATG	2 cut(s)	298, 462
HinfI	GANTC	4 cut(s)	4, 19, 361, 421
HphI	GGTGA	2 cut(s)	70, 197
Hpy188I	TCNGA	1 cut(s)	397
Hpy188III	TCNNGA	2 cut(s)	91, 347
HpyAV	CCTTC	2 cut(s)	345, 479
HpyCH4V	TGCA	1 cut(s)	458
HpyF10VI	GCNNNNNNNGC	2 cut(s)	275, 464
HpyF3I	CTNAG	3 cut(s)	74, 245, 396
Hsp92II	CATG	2 cut(s)	298, 462
Kzo9I	GATC	2 cut(s)	161, 271
LmnI	GCTCC	2 cut(s)	103, 151
LpnPI	CCDG	4 cut(s)	15, 76, 120, 288
MaeI	CTAG	2 cut(s)	356, 480
MaeIII	GTNAC	1 cut(s)	351
MalI	GATC	2 cut(s)	163, 273
MboI	GATC	2 cut(s)	161, 271
MboII	GAAGA	1 cut(s)	420
MfeI	CAATTG	1 cut(s)	52
MluCI	AATT	6 cut(s)	52, 82, 124, 144, 217, 322
MlyI	GAGTC	1 cut(s)	415
MmeI	TCCRAC	1 cut(s)	63
MnlI	CCTC	7 cut(s)	46, 111, 237, 246, 298, 391, 463
MseI	TTAA	1 cut(s)	141
MunI	CAATTG	1 cut(s)	52
Mva1269I	GAATGC	2 cut(s)	100, 469
MwoI	GCNNNNNNNGC	2 cut(s)	275, 464
NcoI	CCATGG	1 cut(s)	294
NdeII	GATC	2 cut(s)	161, 271
NlaIII	CATG	2 cut(s)	298, 462
NlaIV	GGNNCC	2 cut(s)	34, 224
NspV	TTCGAA	1 cut(s)	431
PceI	AGGCCT	1 cut(s)	484
PctI	GAATGC	2 cut(s)	100, 469
PfeI	GAWTC	3 cut(s)	4, 19, 361
PflMI	CCANNNNNTGG	1 cut(s)	45
PleI	GAGTC	1 cut(s)	415
PpsI	GAGTC	1 cut(s)	415
PspN4I	GGNNCC	2 cut(s)	34, 224
PspPI	GGNCC	2 cut(s)	48, 233
RsaI	GTAC	1 cut(s)	196
RsaNI	GTAC	1 cut(s)	195
SaqAI	TTAA	1 cut(s)	141
Sau3AI	GATC	2 cut(s)	161, 271
Sau96I	GGNCC	2 cut(s)	48, 233
SchI	GAGTC	1 cut(s)	415
SetI	ASST	4 cut(s)	34, 156, 290, 402
SfuI	TTCGAA	1 cut(s)	431
SinI	GGWCC	2 cut(s)	48, 233
Sse9I	AATT	6 cut(s)	52, 82, 124, 144, 217, 322
SseBI	AGGCCT	1 cut(s)	484
SspMI	CTAG	2 cut(s)	356, 480
StuI	AGGCCT	1 cut(s)	484
StyI	CCWWGG	2 cut(s)	294, 494
TaqI	TCGA	3 cut(s)	160, 415, 431
TasI	AATT	6 cut(s)	52, 82, 124, 144, 217, 322
TfiI	GAWTC	3 cut(s)	4, 19, 361
Tru1I	TTAA	1 cut(s)	141
Tru9I	TTAA	1 cut(s)	141
TscAI	CASTG	1 cut(s)	307
TspDTI	ATGAA	1 cut(s)	360
TspRI	CASTG	1 cut(s)	307
Van91I	CCANNNNNTGG	1 cut(s)	45
VpaK11BI	GGWCC	2 cut(s)	48, 233
XspI	CTAG	2 cut(s)	356, 480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.