Rmu_sc0000459.1_g000028

Lipid phosphate phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000459.1
OG0004265
Physical Location & Seq
Reverse (-)
124021 .. 126140
2120 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1026 bp
atgggttggcggaatcttggatccctttttccttatttccgcaatctctttaacttccaggtgcagggtgatcaaccgggcacgtacaccatcaagtctcatggagccgcggttgccaagaaccacaagcatgactggctcatactcgtgcttcttgggttgatcgagatagtcttgtatatcattcaacctttccaccgttttgtggggaaggatatgatgactgaccttaagtaccccatgaaagcaaacactgtccctgtttgggctgttcctatgtatgcagtcttggttcctattgccatttttcttttcttctatgcgcgtaggagagatgtgtatgatcttcaccacagcattcttggcctgttgtttgctgtgttggttaccgctgtcattactgattcaataaaaaatggagttgggcgtcctagaccagatttcttttggcgttgctttcctgatggaatcgataattatgataagtggggagatgtggtgtgccatggtaaggccaaggacataaaggaaggacacaagagtttcccgagtggccatacttcatggtcctttgcaggcttatgcttccttgccttgtacttgagtggaaagattaaagtgtttgatcgaaaagggcatgttgcgaaactatgcattgtctcccttcctctactggttgcatctctcgttgcagtgtccagagtatctgactattggcaccattggcaagatgtgtttgctggaggtcttttaggatttgttgtggctgcattttgctaccggcagttcttccctgccccttatcatgatcaaggatggggtccttatgcatatttccaagcattggaggagacgcgtagcaattcaagctcatcgtccactgcaaatgcactcagtgtgcaggtcatgggggttcagaacgttactcaacctgttcctgcaccaaatggtgttgcattttcatcatatgcttcaaatcaatatacaagccttaagctagatgaaatggaatctgggaggaggtga

Protein Analysis

341

Amino Acids

38.36

Weight (kDa)

9.15

Isoelectric Point (pI)

36.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP2 PF01569 121 - 264 2.8e-32 PAP2 superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 892
AccB1I GGYRCC 1 cut(s) 717
AccB7I CCANNNNNTGG 1 cut(s) 844
AccII CGCG 3 cut(s) 110, 325, 856
AciI CCGC 5 cut(s) 10, 40, 108, 110, 390
AclI AACGTT 1 cut(s) 921
AclWI GGATC 2 cut(s) 15, 28
AcoI YGGCCR 1 cut(s) 553
AcyI GRCGYC 1 cut(s) 427
AdeI CACNNNGTG 1 cut(s) 896
AfaI GTAC 3 cut(s) 86, 236, 599
AfiI CCNNNNNNNGG 5 cut(s) 64, 205, 265, 511, 844
AflII CTTAAG 2 cut(s) 230, 992
AflIII ACRYGT 1 cut(s) 854
AgsI TTSAA 4 cut(s) 188, 408, 867, 975
AjnI CCWGG 1 cut(s) 57
AluBI AGCT 2 cut(s) 870, 997
AluI AGCT 2 cut(s) 870, 997
Alw26I GTCTC 3 cut(s) 102, 664, 845
AlwI GGATC 2 cut(s) 15, 28
Ama87I CYCGRG 1 cut(s) 547
AoxI GGCC 3 cut(s) 364, 513, 553
ApeKI GCWGC 1 cut(s) 767
AspLEI GCGC 1 cut(s) 325
AspS9I GGNCC 2 cut(s) 567, 821
AsuC2I CCSGG 1 cut(s) 78
AsuHPI GGTGA 2 cut(s) 80, 341
AvaI CYCGRG 1 cut(s) 547
AvaII GGWCC 2 cut(s) 567, 821
BaeGI GKGCMC 1 cut(s) 83
BalI TGGCCA 1 cut(s) 555
BamHI GGATCC 1 cut(s) 20
BanI GGYRCC 1 cut(s) 717
BauI CACGAG 1 cut(s) 146
BbvI GCAGC 1 cut(s) 754
BccI CCATC 3 cut(s) 98, 458, 810
BciT130I CCWGG 1 cut(s) 59
BclI TGATCA 2 cut(s) 70, 808
BcnI CCSGG 1 cut(s) 78
BcoDI GTCTC 3 cut(s) 102, 664, 845
BfaI CTAG 2 cut(s) 432, 998
BfrI CTTAAG 2 cut(s) 230, 992
BfuAI ACCTGC 1 cut(s) 892
BisI GCNGC 2 cut(s) 108, 768
BlsI GCNGC 2 cut(s) 109, 769
Bme1390I CCNGG 2 cut(s) 59, 78
Bme18I GGWCC 2 cut(s) 567, 821
BmeT110I CYCGRG 1 cut(s) 547
BmgT120I GGNCC 2 cut(s) 567, 821
BmiI GGNNCC 5 cut(s) 22, 106, 294, 719, 822
BmrFI CCNGG 2 cut(s) 59, 78
BmsI GCATC 1 cut(s) 689
BpmI CTGGAG 1 cut(s) 762
BpuEI CTTGAG 1 cut(s) 622
BpuMI CCSGG 1 cut(s) 78
Bsa29I ATCGAT 1 cut(s) 471
BsaAI YACGTR 1 cut(s) 84
BsaHI GRCGYC 1 cut(s) 427
BsaJI CCNNGG 3 cut(s) 108, 505, 516
BsaXI ACNNNNNCTCC 4 cut(s) 96, 126, 483, 513
Bsc4I CCNNNNNNNGG 5 cut(s) 64, 205, 265, 511, 844
Bse118I RCCGGY 1 cut(s) 780
Bse1I ACTGG 2 cut(s) 140, 678
BseBI CCWGG 1 cut(s) 59
BseCI ATCGAT 1 cut(s) 471
BseDI CCNNGG 3 cut(s) 108, 505, 516
BseGI GGATG 1 cut(s) 821
BseLI CCNNNNNNNGG 5 cut(s) 64, 205, 265, 511, 844
BseMII CTCAG 1 cut(s) 907
BseNI ACTGG 2 cut(s) 140, 678
BseRI GAGGAG 1 cut(s) 863
BseSI GKGCMC 1 cut(s) 83
BseXI GCAGC 1 cut(s) 754
BsgI GTGCAG 3 cut(s) 83, 920, 924
Bsh1236I CGCG 3 cut(s) 110, 325, 856
BshFI GGCC 3 cut(s) 366, 515, 555
BshNI GGYRCC 1 cut(s) 717
BshVI ATCGAT 1 cut(s) 471
BsiHKCI CYCGRG 1 cut(s) 547
BsiSI CCGG 2 cut(s) 77, 781
BslFI GGGAC 1 cut(s) 242
BslI CCNNNNNNNGG 5 cut(s) 64, 205, 265, 511, 844
BsmAI GTCTC 3 cut(s) 102, 664, 845
BsmBI CGTCTC 1 cut(s) 845
BsmFI GGGAC 1 cut(s) 242
BsmI GAATGC 1 cut(s) 357
BsnI GGCC 3 cut(s) 366, 515, 555
BsoBI CYCGRG 1 cut(s) 547
Bsp1286I GDGCHC 1 cut(s) 83
Bsp143I GATC 6 cut(s) 20, 70, 162, 343, 625, 808
Bsp19I CCATGG 1 cut(s) 505
BspACI CCGC 5 cut(s) 10, 40, 108, 110, 390
BspANI GGCC 3 cut(s) 366, 515, 555
BspCNI CTCAG 1 cut(s) 906
BspDI ATCGAT 1 cut(s) 471
BspFNI CGCG 3 cut(s) 110, 325, 856
BspHI TCATGA 1 cut(s) 805
BspLI GGNNCC 5 cut(s) 22, 106, 294, 719, 822
BspMI ACCTGC 1 cut(s) 892
BspPI GGATC 2 cut(s) 15, 28
BspT107I GGYRCC 1 cut(s) 717
BspTI CTTAAG 2 cut(s) 230, 992
BsrFI RCCGGY 1 cut(s) 780
BsrI ACTGG 2 cut(s) 140, 678
BssAI RCCGGY 1 cut(s) 780
BssECI CCNNGG 3 cut(s) 108, 505, 516
BssMI GATC 6 cut(s) 20, 70, 162, 343, 625, 808
BssNI GRCGYC 1 cut(s) 427
BssSI CACGAG 1 cut(s) 146
BssT1I CCWWGG 2 cut(s) 505, 516
Bst2BI CACGAG 1 cut(s) 146
Bst2UI CCWGG 1 cut(s) 59
Bst4CI ACNGT 2 cut(s) 200, 256
BstACI GRCGYC 1 cut(s) 427
BstAFI CTTAAG 2 cut(s) 230, 992
BstBAI YACGTR 1 cut(s) 84
BstC8I GCNNGC 1 cut(s) 577
BstDEI CTNAG 1 cut(s) 893
BstDSI CCRYGG 2 cut(s) 108, 505
BstEII GGTNACC 1 cut(s) 385
BstF5I GGATG 1 cut(s) 821
BstFNI CGCG 3 cut(s) 110, 325, 856
BstHHI GCGC 1 cut(s) 325
BstKTI GATC 6 cut(s) 23, 73, 165, 346, 628, 811
BstMAI GTCTC 3 cut(s) 102, 664, 845
BstMBI GATC 6 cut(s) 20, 70, 162, 343, 625, 808
BstMWI GCNNNNNNNGC 5 cut(s) 113, 136, 363, 724, 867
BstNI CCWGG 1 cut(s) 59
BstNSI RCATGY 1 cut(s) 641
BstPI GGTNACC 1 cut(s) 385
BstSCI CCNGG 2 cut(s) 57, 76
BstSLI GKGCMC 1 cut(s) 83
BstUI CGCG 3 cut(s) 110, 325, 856
BstV1I GCAGC 1 cut(s) 754
BstX2I RGATCY 1 cut(s) 20
BstYI RGATCY 1 cut(s) 20
Bsu15I ATCGAT 1 cut(s) 471
BsuRI GGCC 3 cut(s) 366, 515, 555
BsuTUI ATCGAT 1 cut(s) 471
BtgI CCRYGG 2 cut(s) 108, 505
BtsCI GGATG 1 cut(s) 821
BtsI GCAGTG 2 cut(s) 699, 879
BtsIMutI CAGTG 4 cut(s) 252, 699, 879, 901
BveI ACCTGC 1 cut(s) 892
Cac8I GCNNGC 1 cut(s) 577
CciI TCATGA 1 cut(s) 805
CfoI GCGC 1 cut(s) 325
Cfr10I RCCGGY 1 cut(s) 780
Cfr13I GGNCC 2 cut(s) 567, 821
Cfr42I CCGCGG 1 cut(s) 111
ClaI ATCGAT 1 cut(s) 471
CseI GACGC 2 cut(s) 416, 862
Csp6I GTAC 3 cut(s) 85, 235, 598
CviAII CATG 8 cut(s) 101, 131, 241, 506, 564, 638, 806, 907
CviQI GTAC 3 cut(s) 85, 235, 598
DdeI CTNAG 1 cut(s) 893
DpnI GATC 6 cut(s) 22, 72, 164, 345, 627, 810
DpnII GATC 6 cut(s) 20, 70, 162, 343, 625, 808
DraIII CACNNNGTG 1 cut(s) 896
EaeI YGGCCR 1 cut(s) 553
EciI GGCGGA 1 cut(s) 25
Eco130I CCWWGG 2 cut(s) 505, 516
Eco47I GGWCC 2 cut(s) 567, 821
Eco88I CYCGRG 1 cut(s) 547
Eco91I GGTNACC 1 cut(s) 385
EcoO109I RGGNCCY 1 cut(s) 821
EcoO65I GGTNACC 1 cut(s) 385
EcoRII CCWGG 1 cut(s) 57
EcoT14I CCWWGG 2 cut(s) 505, 516
EcoT22I ATGCAT 2 cut(s) 656, 832
ErhI CCWWGG 2 cut(s) 505, 516
Esp3I CGTCTC 1 cut(s) 845
FaeI CATG 8 cut(s) 104, 134, 244, 509, 567, 641, 809, 910
FaqI GGGAC 1 cut(s) 242
FatI CATG 8 cut(s) 100, 130, 240, 505, 563, 637, 805, 906
FauNDI CATATG 1 cut(s) 967
FbaI TGATCA 2 cut(s) 70, 808
Fnu4HI GCNGC 2 cut(s) 108, 768
FokI GGATG 1 cut(s) 828
Fsp4HI GCNGC 2 cut(s) 108, 768
FspBI CTAG 2 cut(s) 432, 998
GlaI GCGC 1 cut(s) 324
GluI GCNGC 2 cut(s) 108, 768
GsuI CTGGAG 1 cut(s) 762
HaeIII GGCC 3 cut(s) 366, 515, 555
HapII CCGG 2 cut(s) 77, 781
HgaI GACGC 2 cut(s) 416, 862
HhaI GCGC 1 cut(s) 325
Hin1I GRCGYC 1 cut(s) 427
Hin1II CATG 8 cut(s) 104, 134, 244, 509, 567, 641, 809, 910
Hin6I GCGC 1 cut(s) 323
HinP1I GCGC 1 cut(s) 323
HinfI GANTC 4 cut(s) 13, 404, 468, 1010
HpaII CCGG 2 cut(s) 77, 781
HphI GGTGA 2 cut(s) 80, 341
Hpy166II GTNNAC 2 cut(s) 87, 879
Hpy188I TCNGA 2 cut(s) 709, 918
Hpy188III TCNNGA 5 cut(s) 166, 461, 547, 699, 806
Hpy8I GTNNAC 2 cut(s) 87, 879
HpyAV CCTTC 3 cut(s) 205, 524, 674
HpyCH4III ACNGT 2 cut(s) 200, 256
HpyCH4IV ACGT 2 cut(s) 83, 921
HpyF10VI GCNNNNNNNGC 5 cut(s) 113, 136, 363, 724, 867
HpyF3I CTNAG 1 cut(s) 893
HpySE526I ACGT 2 cut(s) 83, 921
Hsp92I GRCGYC 1 cut(s) 427
Hsp92II CATG 8 cut(s) 104, 134, 244, 509, 567, 641, 809, 910
HspAI GCGC 1 cut(s) 323
Ksp22I TGATCA 2 cut(s) 70, 808
KspI CCGCGG 1 cut(s) 111
Kzo9I GATC 6 cut(s) 20, 70, 162, 343, 625, 808
LmnI GCTCC 1 cut(s) 104
Lsp1109I GCAGC 1 cut(s) 754
LweI GCATC 1 cut(s) 689
MaeI CTAG 2 cut(s) 432, 998
MaeII ACGT 2 cut(s) 83, 921
MaeIII GTNAC 2 cut(s) 385, 922
MalI GATC 6 cut(s) 22, 72, 164, 345, 627, 810
MboI GATC 6 cut(s) 20, 70, 162, 343, 625, 808
MboII GAAGA 3 cut(s) 307, 338, 781
MflI RGATCY 1 cut(s) 20
MhlI GDGCHC 1 cut(s) 83
MlsI TGGCCA 1 cut(s) 555
MluCI AATT 2 cut(s) 475, 862
MluI ACGCGT 1 cut(s) 854
MluNI TGGCCA 1 cut(s) 555
MnlI CCTC 5 cut(s) 678, 737, 841, 1011, 1014
Mox20I TGGCCA 1 cut(s) 555
Mph1103I ATGCAT 2 cut(s) 656, 832
MscI TGGCCA 1 cut(s) 555
MseI TTAA 4 cut(s) 51, 231, 615, 993
MslI CAYNNNNRTG 2 cut(s) 129, 146
Msp20I TGGCCA 1 cut(s) 555
MspA1I CMGCKG 2 cut(s) 110, 392
MspCI CTTAAG 2 cut(s) 230, 992
MspI CCGG 2 cut(s) 77, 781
MspR9I CCNGG 2 cut(s) 59, 78
Mva1269I GAATGC 1 cut(s) 357
MvaI CCWGG 1 cut(s) 59
MvnI CGCG 3 cut(s) 110, 325, 856
MwoI GCNNNNNNNGC 5 cut(s) 113, 136, 363, 724, 867
NciI CCSGG 1 cut(s) 78
NcoI CCATGG 1 cut(s) 505
NdeI CATATG 1 cut(s) 967
NdeII GATC 6 cut(s) 20, 70, 162, 343, 625, 808
NlaIII CATG 8 cut(s) 104, 134, 244, 509, 567, 641, 809, 910
NlaIV GGNNCC 5 cut(s) 22, 106, 294, 719, 822
NsiI ATGCAT 2 cut(s) 656, 832
NspI RCATGY 1 cut(s) 641
PagI TCATGA 1 cut(s) 805
PctI GAATGC 1 cut(s) 357
PfeI GAWTC 4 cut(s) 13, 404, 468, 1010
PflMI CCANNNNNTGG 1 cut(s) 844
PkrI GCNGC 2 cut(s) 109, 769
Ppu21I YACGTR 1 cut(s) 84
PpuMI RGGWCCY 1 cut(s) 821
Psp1406I AACGTT 1 cut(s) 921
Psp5II RGGWCCY 1 cut(s) 821
Psp6I CCWGG 1 cut(s) 57
PspEI GGTNACC 1 cut(s) 385
PspGI CCWGG 1 cut(s) 57
PspN4I GGNNCC 5 cut(s) 22, 106, 294, 719, 822
PspPI GGNCC 2 cut(s) 567, 821
PspPPI RGGWCCY 1 cut(s) 821
PsuI RGATCY 1 cut(s) 20
RsaI GTAC 3 cut(s) 86, 236, 599
RsaNI GTAC 3 cut(s) 85, 235, 598
RseI CAYNNNNRTG 2 cut(s) 129, 146
SacII CCGCGG 1 cut(s) 111
SaqAI TTAA 4 cut(s) 51, 231, 615, 993
SatI GCNGC 2 cut(s) 108, 768
Sau3AI GATC 6 cut(s) 20, 70, 162, 343, 625, 808
Sau96I GGNCC 2 cut(s) 567, 821
ScrFI CCNGG 2 cut(s) 59, 78
SduI GDGCHC 1 cut(s) 83
SfaNI GCATC 1 cut(s) 689
Sfr303I CCGCGG 1 cut(s) 111
SgrBI CCGCGG 1 cut(s) 111
SinI GGWCC 2 cut(s) 567, 821
SmiMI CAYNNNNRTG 2 cut(s) 129, 146
SmlI CTYRAG 3 cut(s) 230, 601, 992
SmoI CTYRAG 3 cut(s) 230, 601, 992
Sse9I AATT 2 cut(s) 475, 862
SsiI CCGC 5 cut(s) 10, 40, 108, 110, 390
SspMI CTAG 2 cut(s) 432, 998
StyD4I CCNGG 2 cut(s) 57, 76
StyI CCWWGG 2 cut(s) 505, 516
TaaI ACNGT 2 cut(s) 200, 256
TaiI ACGT 2 cut(s) 86, 924
TaqI TCGA 3 cut(s) 165, 471, 628
TasI AATT 2 cut(s) 475, 862
TatI WGTACW 1 cut(s) 597
TauI GCSGC 1 cut(s) 110
TfiI GAWTC 4 cut(s) 13, 404, 468, 1010
Tru1I TTAA 4 cut(s) 51, 231, 615, 993
Tru9I TTAA 4 cut(s) 51, 231, 615, 993
TscAI CASTG 4 cut(s) 259, 699, 886, 901
TseI GCWGC 1 cut(s) 767
TspDTI ATGAA 4 cut(s) 257, 552, 951, 1017
TspRI CASTG 4 cut(s) 259, 699, 886, 901
Van91I CCANNNNNTGG 1 cut(s) 844
Vha464I CTTAAG 2 cut(s) 230, 992
VpaK11BI GGWCC 2 cut(s) 567, 821
XceI RCATGY 1 cut(s) 641
XcmI CCANNNNNNNNNTGG 2 cut(s) 359, 444
XspI CTAG 2 cut(s) 432, 998
Zsp2I ATGCAT 2 cut(s) 656, 832
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.