Rmu_sc0000533.1_g000002

Nucleolar pre-ribosomal-associated protein 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000533.1
OG0002923
Physical Location & Seq
Forward (+)
351 .. 4942
4592 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 2832 bp
atgcttttgggcttcagccctaatcctttgggcttttcggcccaacacttaaacccttggtatgcttactctctaccgcccgtcttaaaccctaaaatcaccaaaacctcactgactgtttttgcaatggaagaaggaagctcagcctgggaggatcaagttatggtggaggaagcctatgacagtgaggttatgggagaagaattgccgaaagttgagcttaaggagaatcatgaagcgaaagttaaagaactattgcataagattacttctaatgagattaaattatgcgctgccggtgcgaaagagtttataaagttgctgaaaggtgattccggaggtgaattgctgtattactatgtgcaaaattcagctcagtgctcggagcttctgggtgcgtggaatctccggcgagggaagccggggatgttttatatactgaagttgatttctgttgttttgagtcatcctgatggggtttatgaagcaaatgatatggggaggttgggggtgagtagggtgttggacaagtttgcgcggtcgattattgagcaacagttgggagatgtgcataaggagttgaagagcagtgaagctaagcgccagatggcggcgcttttgcttttggcttcgattgtgaggcgtggatcggttttggcgtctgaggtggaaaagaagtttgatttcaagctgcaggggttttgcaagttgggggagtataaaatgaggccaaatgggaagaggaggaagctgtcattgaggaagttgtttgttgggtttgcaatgtcgtttctggaggtgggagcgccgggattgttgaggtcggttatacggcagaaggaaatgtattcttgtgtcctccgctggctggggaatgatgatgaggagacagttatatatgttctgtccacattgcagaacaggatacttgttgagggttcatcggttccccctgcccttcggagtgttctgtttgggagtggtactttagaacaattggccaatatttctggaagggagagtggtggagcttctgcagaattggcatacagggtcttagttatggtttgcaccgatccatctaatggcctaatggcagattcaaagagacacctgaagggcaatttaaagcggcaaatagacctaatgaagaagcttaaggcgaccgagattggctaccacagggatctgcttttggctgttgttagtgggagaccgtctcttggtgcagcatacatggaagagttcccttacaatcttgaagattatgcatcacccaaatggttttatgttgttactctagcagcaaacttggtttcctctgtgggcagtggcatcccagccttgtttgacaatgttcatgtgcaggatgtcatgaaatgcttgtatcctcgtcagttcaaccgctccgcgatcaataaagggctgcttcactctgattttctagtgaagcatggaactttaaggcatcttttagaggcactcaagttgttagattccttccttggtgttttaaactgtagagaccaacatgtttcggaatctctcaagcaagaatttcaaaatgaagttcgaagcttgctcccagatcctcaactttttaagagtctactctcttctatgagtagcaactcaagaaagaggacagcagatctggagaagttcccagaacatagcccgaagaatgtgaaaaaattgaaaacagattttggaaacaaggactcagatattgttgtaggcggaataagttttggtccagatacgtccgaaaatgaagatagtcttgtgaatgttatggcagatctttggggtttcgatccttgctccacacctattgctgcactcaaggatgcagacttatatttctactgtagggtgctcgatgctttcaaaatatatcttcggataatgcccactggcttggagggctcatttgagttccttatgaagctcctaagcagtcctttagcattacaaaataatctgcagtgctctcttttgtctttgctaatagaatacattggatggtctccaaggaatagaacaccaattaagactccacccttgatgtacaaacatctacagacattgatgaagttgctgattttttcaccactcagtgacataaaagatcaagcatactgtctcacacaagcagctatgttaagtactggtgcttttgacaaaaaccaacatgaaattgcatcatggttcttgtttataccgggttttgatagaggaaaatcttcggttgaagtcctgggggtgggagtattacaaagcttggctaatgctgtcatctcattcttatctgatgccgtttctactacagggaagaatttcttcaagcattgggatcttattgttaagcgtgataactaccatttggaaactgttaaagatgtgtcacctcaggcccctctaatcttacgggtactgcagaattgtctgagattgcttgattctggatctgggacttttacattacctgagaagacaatgatatctacctatgtgtgcaatacactgaaatatatcttgaaaactcaggttgatgcacggtttctatcttctatgatttgctcactcttggttgagagacttggtgactgttctgccactcatcagtctaggggcaactgtgaatggaggccgttgaacagtttatttttgttttcccagagtatatctgaccgtgaaatttgttgcatttcttctattgacaataaggctaagccttctggtagttcttttgcactagcgcttgaggaagttggaagacttgcaagaggtgggagtgatggtgaagtagctggaataaccaaagcctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NopRA1 Npa1

Protein Analysis

943

Amino Acids

104.92

Weight (kDa)

8.5

Isoelectric Point (pI)

43.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Npa1 PF11707 127 - 429 1.6e-42 Ribosome 60S biogenesis N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 314
AccB7I CCANNNNNTGG 1 cut(s) 1085
AccBSI CCGCTC 1 cut(s) 1407
AccI GTMKAC 1 cut(s) 1609
AccII CGCG 2 cut(s) 538, 1412
AccIII TCCGGA 1 cut(s) 335
AciI CCGC 8 cut(s) 77, 538, 611, 862, 1132, 1405, 1410, 1740
AclWI GGATC 8 cut(s) 162, 655, 1070, 1194, 1583, 1811, 2364, 2476
AcoI YGGCCR 1 cut(s) 999
AcsI RAATTY 4 cut(s) 367, 1556, 2338, 2700
AcuI CTGAAG 2 cut(s) 461, 1136
AcyI GRCGYC 1 cut(s) 659
AdeI CACNNNGTG 1 cut(s) 2120
AfaI GTAC 4 cut(s) 985, 2072, 2170, 2436
AfeI AGCGCT 1 cut(s) 2763
AfiI CCNNNNNNNGG 5 cut(s) 610, 868, 1085, 1223, 2266
AflII CTTAAG 2 cut(s) 221, 1157
AflIII ACRYGT 1 cut(s) 1531
AjnI CCWGG 2 cut(s) 146, 2259
Alw21I GWGCWC 3 cut(s) 383, 1881, 1994
Alw26I GTCTC 8 cut(s) 881, 1102, 1207, 1224, 1518, 2034, 2150, 2593
AlwI GGATC 8 cut(s) 162, 655, 1070, 1194, 1583, 1811, 2364, 2476
Aor13HI TCCGGA 1 cut(s) 335
Aor51HI AGCGCT 1 cut(s) 2763
AoxI GGCC 6 cut(s) 39, 728, 999, 1087, 2415, 2651
ApeKI GCWGC 7 cut(s) 293, 691, 1229, 1304, 1426, 1838, 2156
ApoI RAATTY 4 cut(s) 367, 1556, 2338, 2700
Asp700I GAANNNNTTC 3 cut(s) 2245, 2339, 2342
AspLEI GCGC 6 cut(s) 293, 538, 603, 616, 808, 2764
AspS9I GGNCC 3 cut(s) 40, 1754, 2416
AsuC2I CCSGG 3 cut(s) 423, 810, 2226
AsuHPI GGTGA 9 cut(s) 91, 341, 353, 523, 1266, 2103, 2400, 2618, 2816
AsuII TTCGAA 1 cut(s) 1573
AvaII GGWCC 1 cut(s) 1754
AxyI CCTNAGG 1 cut(s) 2412
BalI TGGCCA 1 cut(s) 1001
BanII GRGCYC 1 cut(s) 1931
BbsI GAAGAC 2 cut(s) 2501, 2785
Bbv12I GWGCWC 3 cut(s) 383, 1881, 1994
BbvI GCAGC 7 cut(s) 280, 678, 1241, 1316, 1413, 1825, 2168
BccI CCATC 5 cut(s) 467, 601, 1087, 2019, 2795
BceAI ACGGC 3 cut(s) 848, 2303, 2638
BciT130I CCWGG 2 cut(s) 148, 2261
BciVI GTATCC 2 cut(s) 918, 1398
BcnI CCSGG 3 cut(s) 423, 810, 2226
BcoDI GTCTC 8 cut(s) 881, 1102, 1207, 1224, 1518, 2034, 2150, 2593
BfaI CTAG 5 cut(s) 1301, 1445, 2631, 2759, 2830
BfmI CTRYAG 8 cut(s) 692, 1035, 1519, 1870, 1985, 2081, 2328, 2438
BfoI RGCGCY 4 cut(s) 604, 617, 809, 2765
BfrI CTTAAG 2 cut(s) 221, 1157
BfuI GTATCC 2 cut(s) 918, 1398
BglII AGATCT 2 cut(s) 1651, 1801
BisI GCNGC 9 cut(s) 294, 612, 692, 1133, 1230, 1305, 1427, 1839, 2157
BlpI GCTNAGC 3 cut(s) 142, 597, 2733
BlsI GCNGC 9 cut(s) 295, 613, 693, 1134, 1231, 1306, 1428, 1840, 2158
BmcAI AGTACT 1 cut(s) 2170
Bme1390I CCNGG 5 cut(s) 148, 423, 810, 2226, 2261
Bme18I GGWCC 1 cut(s) 1754
BmgT120I GGNCC 3 cut(s) 40, 1754, 2416
BmiI GGNNCC 2 cut(s) 948, 2418
BmrFI CCNGG 5 cut(s) 148, 423, 810, 2226, 2261
BmsI GCATC 8 cut(s) 1280, 1344, 1477, 1840, 1873, 2213, 2305, 2545
BpiI GAAGAC 2 cut(s) 2501, 2785
BplI GAGNNNNNCTC 2 cut(s) 1204, 1236
BpmI CTGGAG 2 cut(s) 815, 1676
Bpu10I CCTNAGC 1 cut(s) 1955
Bpu1102I GCTNAGC 3 cut(s) 142, 597, 2733
Bpu14I TTCGAA 1 cut(s) 1573
BpuEI CTTGAG 5 cut(s) 1469, 1532, 1618, 1829, 2786
BpuMI CCSGG 3 cut(s) 423, 810, 2226
BsaHI GRCGYC 1 cut(s) 659
BsaI GGTCTC 3 cut(s) 1207, 1518, 2034
BsaJI CCNNGG 6 cut(s) 56, 147, 422, 1504, 2033, 2260
BsaWI WCCGGW 1 cut(s) 335
BsaXI ACNNNNNCTCC 2 cut(s) 2788, 2818
Bsc4I CCNNNNNNNGG 5 cut(s) 610, 868, 1085, 1223, 2266
Bse118I RCCGGY 1 cut(s) 296
Bse1I ACTGG 2 cut(s) 1921, 2176
Bse21I CCTNAGG 1 cut(s) 2412
Bse3DI GCAATG 3 cut(s) 132, 789, 911
BseAI TCCGGA 1 cut(s) 335
BseBI CCWGG 2 cut(s) 148, 2261
BseDI CCNNGG 6 cut(s) 56, 147, 422, 1504, 2033, 2260
BseGI GGATG 6 cut(s) 432, 466, 1335, 1375, 1855, 2030
BseLI CCNNNNNNNGG 5 cut(s) 610, 868, 1085, 1223, 2266
BseMI GCAATG 3 cut(s) 132, 789, 911
BseMII CTCAG 9 cut(s) 156, 389, 654, 1737, 2131, 2426, 2441, 2481, 2561
BseNI ACTGG 2 cut(s) 1921, 2176
BseRI GAGGAG 2 cut(s) 757, 899
BseXI GCAGC 7 cut(s) 280, 678, 1241, 1316, 1413, 1825, 2168
BseYI CCCAGC 2 cut(s) 868, 1339
BsgI GTGCAG 3 cut(s) 1248, 1385, 1824
Bsh1236I CGCG 2 cut(s) 538, 1412
Bsh1285I CGRYCG 2 cut(s) 542, 1167
BshFI GGCC 6 cut(s) 41, 730, 1001, 1089, 2417, 2653
BsiEI CGRYCG 2 cut(s) 542, 1167
BsiHKAI GWGCWC 3 cut(s) 383, 1881, 1994
BsiSI CCGG 6 cut(s) 297, 336, 409, 422, 809, 2225
BslFI GGGAC 1 cut(s) 2488
BslI CCNNNNNNNGG 5 cut(s) 610, 868, 1085, 1223, 2266
BsmAI GTCTC 8 cut(s) 881, 1102, 1207, 1224, 1518, 2034, 2150, 2593
BsmBI CGTCTC 1 cut(s) 1224
BsmFI GGGAC 1 cut(s) 2488
BsnI GGCC 6 cut(s) 41, 730, 1001, 1089, 2417, 2653
Bso31I GGTCTC 3 cut(s) 1207, 1518, 2034
Bsp119I TTCGAA 1 cut(s) 1573
Bsp1286I GDGCHC 4 cut(s) 383, 1881, 1931, 1994
Bsp13I TCCGGA 1 cut(s) 335
Bsp1407I TGTACA 1 cut(s) 2070
Bsp1720I GCTNAGC 3 cut(s) 142, 597, 2733
BspACI CCGC 8 cut(s) 77, 538, 611, 862, 1132, 1405, 1410, 1740
BspANI GGCC 6 cut(s) 41, 730, 1001, 1089, 2417, 2653
BspCNI CTCAG 9 cut(s) 155, 388, 655, 1736, 2130, 2425, 2442, 2482, 2560
BspEI TCCGGA 1 cut(s) 335
BspFNI CGCG 2 cut(s) 538, 1412
BspHI TCATGA 2 cut(s) 232, 1374
BspLI GGNNCC 2 cut(s) 948, 2418
BspMAI CTGCAG 4 cut(s) 696, 1039, 1989, 2442
BspPI GGATC 8 cut(s) 162, 655, 1070, 1194, 1583, 1811, 2364, 2476
BspQI GCTCTTC 1 cut(s) 578
BspT104I TTCGAA 1 cut(s) 1573
BspTI CTTAAG 2 cut(s) 221, 1157
BspTNI GGTCTC 3 cut(s) 1207, 1518, 2034
BsrBI CCGCTC 1 cut(s) 1407
BsrDI GCAATG 3 cut(s) 132, 789, 911
BsrFI RCCGGY 1 cut(s) 296
BsrGI TGTACA 1 cut(s) 2070
BsrI ACTGG 2 cut(s) 1921, 2176
BssAI RCCGGY 1 cut(s) 296
BssECI CCNNGG 6 cut(s) 56, 147, 422, 1504, 2033, 2260
BssNI GRCGYC 1 cut(s) 659
BssT1I CCWWGG 3 cut(s) 56, 1504, 2033
Bst2UI CCWGG 2 cut(s) 148, 2261
Bst6I CTCTTC 4 cut(s) 578, 734, 1236, 1621
BstACI GRCGYC 1 cut(s) 659
BstAFI CTTAAG 2 cut(s) 221, 1157
BstAUI TGTACA 1 cut(s) 2070
BstBI TTCGAA 1 cut(s) 1573
BstC8I GCNNGC 2 cut(s) 866, 1580
BstF5I GGATG 6 cut(s) 432, 466, 1335, 1375, 1855, 2030
BstFNI CGCG 2 cut(s) 538, 1412
BstH2I RGCGCY 4 cut(s) 604, 617, 809, 2765
BstHHI GCGC 6 cut(s) 293, 538, 603, 616, 808, 2764
BstMAI GTCTC 8 cut(s) 881, 1102, 1207, 1224, 1518, 2034, 2150, 2593
BstMCI CGRYCG 2 cut(s) 542, 1167
BstMWI GCNNNNNNNGC 4 cut(s) 299, 418, 1043, 1926
BstNI CCWGG 2 cut(s) 148, 2261
BstNSI RCATGY 1 cut(s) 1535
BstSCI CCNGG 5 cut(s) 146, 421, 808, 2224, 2259
BstSFI CTRYAG 8 cut(s) 692, 1035, 1519, 1870, 1985, 2081, 2328, 2438
BstUI CGCG 2 cut(s) 538, 1412
BstV1I GCAGC 7 cut(s) 280, 678, 1241, 1316, 1413, 1825, 2168
BstV2I GAAGAC 2 cut(s) 2501, 2785
BstX2I RGATCY 6 cut(s) 1186, 1588, 1651, 1801, 2356, 2468
BstXI CCANNNNNNTGG 1 cut(s) 1921
BstYI RGATCY 6 cut(s) 1186, 1588, 1651, 1801, 2356, 2468
Bsu36I CCTNAGG 1 cut(s) 2412
BsuI GTATCC 2 cut(s) 918, 1398
BsuRI GGCC 6 cut(s) 41, 730, 1001, 1089, 2417, 2653
BtsCI GGATG 6 cut(s) 432, 466, 1335, 1375, 1855, 2030
BtsI GCAGTG 3 cut(s) 595, 1336, 1994
BtsIMutI CAGTG 9 cut(s) 110, 190, 383, 595, 1336, 1914, 1994, 2125, 2525
Cac8I GCNNGC 2 cut(s) 866, 1580
CciI TCATGA 2 cut(s) 232, 1374
CfoI GCGC 6 cut(s) 293, 538, 603, 616, 808, 2764
Cfr10I RCCGGY 1 cut(s) 296
Cfr13I GGNCC 3 cut(s) 40, 1754, 2416
CseI GACGC 1 cut(s) 648
Csp6I GTAC 4 cut(s) 984, 2071, 2169, 2435
CspCI CAANNNNNGTGG 2 cut(s) 1816, 1851
CviAII CATG 8 cut(s) 233, 1237, 1361, 1375, 1454, 1532, 2195, 2208
CviQI GTAC 4 cut(s) 984, 2071, 2169, 2435
DraI TTTAAA 2 cut(s) 1128, 1515
DraIII CACNNNGTG 1 cut(s) 2120
EaeI YGGCCR 1 cut(s) 999
Eam1104I CTCTTC 4 cut(s) 578, 734, 1236, 1621
EarI CTCTTC 4 cut(s) 578, 734, 1236, 1621
EciI GGCGGA 1 cut(s) 1755
Eco130I CCWWGG 3 cut(s) 56, 1504, 2033
Eco24I GRGCYC 1 cut(s) 1931
Eco31I GGTCTC 3 cut(s) 1207, 1518, 2034
Eco32I GATATC 1 cut(s) 2505
Eco47I GGWCC 1 cut(s) 1754
Eco47III AGCGCT 1 cut(s) 2763
Eco57I CTGAAG 2 cut(s) 461, 1136
Eco81I CCTNAGG 1 cut(s) 2412
EcoO109I RGGNCCY 1 cut(s) 2416
EcoRII CCWGG 2 cut(s) 146, 2259
EcoRV GATATC 1 cut(s) 2505
EcoT14I CCWWGG 3 cut(s) 56, 1504, 2033
EcoT22I ATGCAT 1 cut(s) 1273
EcoT38I GRGCYC 1 cut(s) 1931
ErhI CCWWGG 3 cut(s) 56, 1504, 2033
Esp3I CGTCTC 1 cut(s) 1224
FaeI CATG 8 cut(s) 236, 1240, 1364, 1378, 1457, 1535, 2198, 2211
FaqI GGGAC 1 cut(s) 2488
FatI CATG 8 cut(s) 232, 1236, 1360, 1374, 1453, 1531, 2194, 2207
FblI GTMKAC 1 cut(s) 1609
Fnu4HI GCNGC 9 cut(s) 294, 612, 692, 1133, 1230, 1305, 1427, 1839, 2157
FokI GGATG 6 cut(s) 439, 453, 1322, 1382, 1862, 2037
FriOI GRGCYC 1 cut(s) 1931
Fsp4HI GCNGC 9 cut(s) 294, 612, 692, 1133, 1230, 1305, 1427, 1839, 2157
FspBI CTAG 5 cut(s) 1301, 1445, 2631, 2759, 2830
GlaI GCGC 6 cut(s) 292, 537, 602, 615, 807, 2763
GluI GCNGC 9 cut(s) 294, 612, 692, 1133, 1230, 1305, 1427, 1839, 2157
GsaI CCCAGC 2 cut(s) 872, 1343
GsuI CTGGAG 2 cut(s) 815, 1676
HaeII RGCGCY 4 cut(s) 604, 617, 809, 2765
HaeIII GGCC 6 cut(s) 41, 730, 1001, 1089, 2417, 2653
HapII CCGG 6 cut(s) 297, 336, 409, 422, 809, 2225
HgaI GACGC 1 cut(s) 648
HhaI GCGC 6 cut(s) 293, 538, 603, 616, 808, 2764
Hin1I GRCGYC 1 cut(s) 659
Hin1II CATG 8 cut(s) 236, 1240, 1364, 1378, 1457, 1535, 2198, 2211
Hin6I GCGC 6 cut(s) 291, 536, 601, 614, 806, 2762
HinP1I GCGC 6 cut(s) 291, 536, 601, 614, 806, 2762
HindIII AAGCTT 3 cut(s) 1154, 1576, 2281
HpaII CCGG 6 cut(s) 297, 336, 409, 422, 809, 2225
HphI GGTGA 9 cut(s) 91, 341, 353, 523, 1266, 2103, 2400, 2618, 2816
Hpy166II GTNNAC 2 cut(s) 909, 1610
Hpy8I GTNNAC 2 cut(s) 909, 1610
HpyAV CCTTC 7 cut(s) 128, 832, 968, 1008, 1111, 1510, 2748
HpyCH4IV ACGT 1 cut(s) 1763
HpyF10VI GCNNNNNNNGC 4 cut(s) 299, 418, 1043, 1926
HpySE526I ACGT 1 cut(s) 1763
Hsp92I GRCGYC 1 cut(s) 659
Hsp92II CATG 8 cut(s) 236, 1240, 1364, 1378, 1457, 1535, 2198, 2211
HspAI GCGC 6 cut(s) 291, 536, 601, 614, 806, 2762
Kpn2I TCCGGA 1 cut(s) 335
LguI GCTCTTC 1 cut(s) 578
LmnI GCTCC 7 cut(s) 385, 803, 1028, 1412, 1587, 1829, 1956
Lsp1109I GCAGC 7 cut(s) 280, 678, 1241, 1316, 1413, 1825, 2168
LweI GCATC 8 cut(s) 1280, 1344, 1477, 1840, 1873, 2213, 2305, 2545
MaeI CTAG 5 cut(s) 1301, 1445, 2631, 2759, 2830
MaeII ACGT 1 cut(s) 1763
MaeIII GTNAC 4 cut(s) 1294, 2120, 2406, 2606
MbiI CCGCTC 1 cut(s) 1407
MfeI CAATTG 1 cut(s) 995
MflI RGATCY 6 cut(s) 1186, 1588, 1651, 1801, 2356, 2468
MhlI GDGCHC 4 cut(s) 383, 1881, 1931, 1994
MlsI TGGCCA 1 cut(s) 1001
MluNI TGGCCA 1 cut(s) 1001
MlyI GAGTC 4 cut(s) 472, 1615, 1715, 2050
MmeI TCCRAC 2 cut(s) 504, 2755
Mox20I TGGCCA 1 cut(s) 1001
Mph1103I ATGCAT 1 cut(s) 1273
MroI TCCGGA 1 cut(s) 335
MroXI GAANNNNTTC 3 cut(s) 2245, 2339, 2342
MscI TGGCCA 1 cut(s) 1001
MslI CAYNNNNRTG 2 cut(s) 471, 1279
Msp20I TGGCCA 1 cut(s) 1001
MspA1I CMGCKG 1 cut(s) 864
MspCI CTTAAG 2 cut(s) 221, 1157
MspI CCGG 6 cut(s) 297, 336, 409, 422, 809, 2225
MspR9I CCNGG 5 cut(s) 148, 423, 810, 2226, 2261
MunI CAATTG 1 cut(s) 995
MvaI CCWGG 2 cut(s) 148, 2261
MvnI CGCG 2 cut(s) 538, 1412
MwoI GCNNNNNNNGC 4 cut(s) 299, 418, 1043, 1926
NciI CCSGG 3 cut(s) 423, 810, 2226
NlaIII CATG 8 cut(s) 236, 1240, 1364, 1378, 1457, 1535, 2198, 2211
NlaIV GGNNCC 2 cut(s) 948, 2418
NmuCI GTSAC 3 cut(s) 2120, 2406, 2606
NsiI ATGCAT 1 cut(s) 1273
NspI RCATGY 1 cut(s) 1535
NspV TTCGAA 1 cut(s) 1573
PagI TCATGA 2 cut(s) 232, 1374
PciI ACATGT 1 cut(s) 1531
PciSI GCTCTTC 1 cut(s) 578
PcsI WCGNNNNNNNCGW 1 cut(s) 656
PdmI GAANNNNTTC 3 cut(s) 2245, 2339, 2342
PfeI GAWTC 7 cut(s) 229, 332, 403, 1100, 1496, 1541, 2462
PflMI CCANNNNNTGG 1 cut(s) 1085
PkrI GCNGC 9 cut(s) 295, 613, 693, 1134, 1231, 1306, 1428, 1840, 2158
PleI GAGTC 4 cut(s) 471, 1614, 1715, 2050
PpsI GAGTC 4 cut(s) 471, 1614, 1715, 2050
PscI ACATGT 1 cut(s) 1531
PsiI TTATAA 1 cut(s) 314
Psp6I CCWGG 2 cut(s) 146, 2259
PspFI CCCAGC 2 cut(s) 868, 1339
PspGI CCWGG 2 cut(s) 146, 2259
PspN4I GGNNCC 2 cut(s) 948, 2418
PspPI GGNCC 3 cut(s) 40, 1754, 2416
PstI CTGCAG 4 cut(s) 696, 1039, 1989, 2442
PsuI RGATCY 6 cut(s) 1186, 1588, 1651, 1801, 2356, 2468
RsaI GTAC 4 cut(s) 985, 2072, 2170, 2436
RsaNI GTAC 4 cut(s) 984, 2071, 2169, 2435
RseI CAYNNNNRTG 2 cut(s) 471, 1279
SapI GCTCTTC 1 cut(s) 578
SatI GCNGC 9 cut(s) 294, 612, 692, 1133, 1230, 1305, 1427, 1839, 2157
Sau96I GGNCC 3 cut(s) 40, 1754, 2416
ScaI AGTACT 1 cut(s) 2170
SchI GAGTC 4 cut(s) 472, 1615, 1715, 2050
ScrFI CCNGG 5 cut(s) 148, 423, 810, 2226, 2261
SduI GDGCHC 4 cut(s) 383, 1881, 1931, 1994
SfaNI GCATC 8 cut(s) 1280, 1344, 1477, 1840, 1873, 2213, 2305, 2545
SfcI CTRYAG 8 cut(s) 692, 1035, 1519, 1870, 1985, 2081, 2328, 2438
SfuI TTCGAA 1 cut(s) 1573
SinI GGWCC 1 cut(s) 1754
SmiMI CAYNNNNRTG 2 cut(s) 471, 1279
SmlI CTYRAG 7 cut(s) 221, 1157, 1484, 1547, 1633, 1844, 2765
SmoI CTYRAG 7 cut(s) 221, 1157, 1484, 1547, 1633, 1844, 2765
SsiI CCGC 8 cut(s) 77, 538, 611, 862, 1132, 1405, 1410, 1740
SspI AATATT 1 cut(s) 1006
SspMI CTAG 5 cut(s) 1301, 1445, 2631, 2759, 2830
StyD4I CCNGG 5 cut(s) 146, 421, 808, 2224, 2259
StyI CCWWGG 3 cut(s) 56, 1504, 2033
TaiI ACGT 1 cut(s) 1766
TaqI TCGA 5 cut(s) 542, 632, 1573, 1815, 1881
TaqII GACCGA 1 cut(s) 1181
TatI WGTACW 2 cut(s) 2070, 2168
TauI GCSGC 2 cut(s) 614, 1135
TfiI GAWTC 7 cut(s) 229, 332, 403, 1100, 1496, 1541, 2462
TscAI CASTG 9 cut(s) 117, 190, 383, 595, 1336, 1921, 1994, 2125, 2532
TseFI GTSAC 3 cut(s) 2120, 2406, 2606
TseI GCWGC 7 cut(s) 293, 691, 1229, 1304, 1426, 1838, 2156
Tsp45I GTSAC 3 cut(s) 2120, 2406, 2606
TspRI CASTG 9 cut(s) 117, 190, 383, 595, 1336, 1921, 1994, 2125, 2532
Van91I CCANNNNNTGG 1 cut(s) 1085
Vha464I CTTAAG 2 cut(s) 221, 1157
VpaK11BI GGWCC 1 cut(s) 1754
XapI RAATTY 4 cut(s) 367, 1556, 2338, 2700
XceI RCATGY 1 cut(s) 1535
XmiI GTMKAC 1 cut(s) 1609
XmnI GAANNNNTTC 3 cut(s) 2245, 2339, 2342
XspI CTAG 5 cut(s) 1301, 1445, 2631, 2759, 2830
ZrmI AGTACT 1 cut(s) 2170
Zsp2I ATGCAT 1 cut(s) 1273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.