Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000633.1

Orthogroup ID

OG0014716

Physical Location & Seq

Genomic Coordinates Forward (+)

33120 .. 33878

Gene Structure 759 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000633.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

atggagaaagaatggctgcaatttgatagatttaaggatgaatacatagtgggagctcgtatgtttgtggataaagcaagggcagattatgggaattctgaagatgagattatatgcccatgtatcaaatgtagaaactctgaacaccaccactttgagatagtctatgagcacttggtaacaagaggaatggatcctacttacaagatttggatttgtcatggtgaaacaggaagtgaacccaatcatgaagatcttgagattcctcagacatataagttttttaaggatttatgttttcaacatgatgaaaatgatgaagatgatgaagatgtagatgacactattgagactagagaggcagcaattttacatttagtaagagaagctgaaactcccttgttctttggctgtacaaactatacaaagatgtcagcatcagttgctttattgaagatgaaagcaagacattgtttgactgatattgctttcgatgacattcttcgcactagccgtagtttcttaccggaagataacacacttccagagtccttatattcaatgaagaagctagtgaaggcatttgatcttggatatgagaagatacacacatgtgtcaatgattgctgtttatttagaaaagatttgcagcatctggaaaattgtccaaagtgtgatgcttcaagatggaaacttaatgaaagcagttctaaaattcaaaaggcatccctgcaaaagttttgcattactttccaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4216 Transpos_assoc

Protein Analysis

252

Amino Acids

29.53

Weight (kDa)

5.17

Isoelectric Point (pI)

38.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014716)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g16175
rosa_multiflora	Rmu_sc0000633.1_g000011 Rmu_sc0001320.1_g000013 Rmu_sc0002244.1_g000023 Rmu_sc0002662.1_g000007 Rmu_sc0003152.1_g000001 Rmu_sc0004596.1_g000037
rosa_roxburghii	Rroxscaffold_2G00105670 Rroxscaffold_5G00368480
rosa_samantha	Rh2DG504200 Rh3CG072100 Rh5CG263500 Rh5CG466600 Rh5DG558700 Rh6CG061600 Rh7BG187700
rosa_wichuraiana	Rw7G035340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	188, 201
AcsI	RAATTY	2 cut(s)	94, 714
AcuI	CTGAAG	1 cut(s)	120
AfaI	GTAC	1 cut(s)	415
AflIII	ACRYGT	1 cut(s)	611
AgsI	TTSAA	5 cut(s)	302, 454, 561, 684, 719
AleI	CACNNNNGTG	1 cut(s)	612
AluBI	AGCT	3 cut(s)	56, 389, 571
AluI	AGCT	3 cut(s)	56, 389, 571
Alw21I	GWGCWC	2 cut(s)	58, 174
Alw26I	GTCTC	1 cut(s)	344
AlwI	GGATC	2 cut(s)	188, 201
AlwNI	CAGNNNCTG	1 cut(s)	655
ApeKI	GCWGC	3 cut(s)	16, 362, 649
ApoI	RAATTY	2 cut(s)	94, 714
AsuHPI	GGTGA	1 cut(s)	236
BamHI	GGATCC	1 cut(s)	193
BanII	GRGCYC	1 cut(s)	58
Bbv12I	GWGCWC	2 cut(s)	58, 174
BbvI	GCAGC	3 cut(s)	3, 374, 661
BccI	CCATC	1 cut(s)	681
BceAI	ACGGC	1 cut(s)	498
BcoDI	GTCTC	1 cut(s)	344
BfaI	CTAG	3 cut(s)	354, 510, 572
BglII	AGATCT	1 cut(s)	253
BisI	GCNGC	3 cut(s)	17, 363, 650
BlsI	GCNGC	3 cut(s)	18, 364, 651
BmiI	GGNNCC	1 cut(s)	195
BmsI	GCATC	4 cut(s)	446, 661, 667, 734
BpuEI	CTTGAG	1 cut(s)	278
BsaWI	WCCGGW	1 cut(s)	526
BseGI	GGATG	2 cut(s)	43, 725
BseMII	CTCAG	1 cut(s)	281
BseXI	GCAGC	3 cut(s)	3, 374, 661
BsiHKAI	GWGCWC	2 cut(s)	58, 174
BsiSI	CCGG	1 cut(s)	527
BsmAI	GTCTC	1 cut(s)	344
Bsp1286I	GDGCHC	2 cut(s)	58, 174
Bsp1407I	TGTACA	1 cut(s)	413
Bsp143I	GATC	3 cut(s)	193, 253, 586
BspCNI	CTCAG	1 cut(s)	280
BspHI	TCATGA	1 cut(s)	247
BspLI	GGNNCC	1 cut(s)	195
BspPI	GGATC	2 cut(s)	188, 201
BsrGI	TGTACA	1 cut(s)	413
BssMI	GATC	3 cut(s)	193, 253, 586
BstAPI	GCANNNNNTGC	1 cut(s)	443
BstAUI	TGTACA	1 cut(s)	413
BstDEI	CTNAG	1 cut(s)	267
BstF5I	GGATG	2 cut(s)	43, 725
BstKTI	GATC	3 cut(s)	196, 256, 589
BstMAI	GTCTC	1 cut(s)	344
BstMBI	GATC	3 cut(s)	193, 253, 586
BstMWI	GCNNNNNNNGC	1 cut(s)	443
BstNSI	RCATGY	1 cut(s)	615
BstV1I	GCAGC	3 cut(s)	3, 374, 661
BstX2I	RGATCY	2 cut(s)	193, 253
BstYI	RGATCY	2 cut(s)	193, 253
BtsCI	GGATG	2 cut(s)	43, 725
CaiI	CAGNNNCTG	1 cut(s)	655
CciI	TCATGA	1 cut(s)	247
Csp6I	GTAC	1 cut(s)	414
CviAII	CATG	5 cut(s)	120, 221, 248, 305, 612
CviJI	RGCY	6 cut(s)	16, 56, 389, 411, 513, 571
CviKI_1	RGCY	6 cut(s)	16, 56, 389, 411, 513, 571
CviQI	GTAC	1 cut(s)	414
DdeI	CTNAG	1 cut(s)	267
DpnI	GATC	3 cut(s)	195, 255, 588
DpnII	GATC	3 cut(s)	193, 253, 586
Ecl136II	GAGCTC	1 cut(s)	56
Eco24I	GRGCYC	1 cut(s)	58
Eco53kI	GAGCTC	1 cut(s)	56
Eco57I	CTGAAG	1 cut(s)	120
EcoICRI	GAGCTC	1 cut(s)	56
EcoRI	GAATTC	1 cut(s)	94
EcoT38I	GRGCYC	1 cut(s)	58
FaeI	CATG	5 cut(s)	123, 224, 251, 308, 615
FatI	CATG	5 cut(s)	119, 220, 247, 304, 611
Fnu4HI	GCNGC	3 cut(s)	17, 363, 650
FokI	GGATG	2 cut(s)	50, 712
FriOI	GRGCYC	1 cut(s)	58
Fsp4HI	GCNGC	3 cut(s)	17, 363, 650
FspBI	CTAG	3 cut(s)	354, 510, 572
GluI	GCNGC	3 cut(s)	17, 363, 650
HapII	CCGG	1 cut(s)	527
Hin1II	CATG	5 cut(s)	123, 224, 251, 308, 615
HinfI	GANTC	2 cut(s)	262, 548
HpaII	CCGG	1 cut(s)	527
HphI	GGTGA	1 cut(s)	236
Hpy166II	GTNNAC	1 cut(s)	239
Hpy188I	TCNGA	3 cut(s)	100, 142, 270
Hpy188III	TCNNGA	5 cut(s)	248, 257, 545, 656, 684
Hpy8I	GTNNAC	1 cut(s)	239
HpyAV	CCTTC	1 cut(s)	571
HpyCH4V	TGCA	4 cut(s)	19, 649, 733, 744
HpyF10VI	GCNNNNNNNGC	1 cut(s)	443
HpyF3I	CTNAG	1 cut(s)	267
Hsp92II	CATG	5 cut(s)	123, 224, 251, 308, 615
Kzo9I	GATC	3 cut(s)	193, 253, 586
LmnI	GCTCC	1 cut(s)	53
LpnPI	CCDG	5 cut(s)	216, 540, 558, 641, 743
Lsp1109I	GCAGC	3 cut(s)	3, 374, 661
LweI	GCATC	4 cut(s)	446, 661, 667, 734
MaeI	CTAG	3 cut(s)	354, 510, 572
MaeIII	GTNAC	1 cut(s)	178
MalI	GATC	3 cut(s)	195, 255, 588
MboI	GATC	3 cut(s)	193, 253, 586
MboII	GAAGA	9 cut(s)	113, 263, 332, 341, 466, 494, 542, 577, 613
MflI	RGATCY	2 cut(s)	193, 253
MhlI	GDGCHC	2 cut(s)	58, 174
MluCI	AATT	5 cut(s)	20, 94, 366, 661, 714
MlyI	GAGTC	1 cut(s)	557
MnlI	CCTC	3 cut(s)	179, 276, 352
MseI	TTAA	3 cut(s)	33, 285, 696
MslI	CAYNNNNRTG	1 cut(s)	612
MspI	CCGG	1 cut(s)	527
MwoI	GCNNNNNNNGC	1 cut(s)	443
NdeII	GATC	3 cut(s)	193, 253, 586
NlaIII	CATG	5 cut(s)	123, 224, 251, 308, 615
NlaIV	GGNNCC	1 cut(s)	195
NspI	RCATGY	1 cut(s)	615
OliI	CACNNNNGTG	1 cut(s)	612
PagI	TCATGA	1 cut(s)	247
PciI	ACATGT	1 cut(s)	611
PcsI	WCGNNNNNNNCGW	1 cut(s)	511
PfeI	GAWTC	1 cut(s)	262
PkrI	GCNGC	3 cut(s)	18, 364, 651
PleI	GAGTC	1 cut(s)	556
PpsI	GAGTC	1 cut(s)	556
PscI	ACATGT	1 cut(s)	611
Psp124BI	GAGCTC	1 cut(s)	58
PspN4I	GGNNCC	1 cut(s)	195
PstNI	CAGNNNCTG	1 cut(s)	655
PsuI	RGATCY	2 cut(s)	193, 253
RsaI	GTAC	1 cut(s)	415
RsaNI	GTAC	1 cut(s)	414
RseI	CAYNNNNRTG	1 cut(s)	612
SacI	GAGCTC	1 cut(s)	58
SaqAI	TTAA	3 cut(s)	33, 285, 696
SatI	GCNGC	3 cut(s)	17, 363, 650
Sau3AI	GATC	3 cut(s)	193, 253, 586
SchI	GAGTC	1 cut(s)	557
SduI	GDGCHC	2 cut(s)	58, 174
SetI	ASST	3 cut(s)	58, 391, 573
SfaNI	GCATC	4 cut(s)	446, 661, 667, 734
SmiMI	CAYNNNNRTG	1 cut(s)	612
SmlI	CTYRAG	1 cut(s)	257
SmoI	CTYRAG	1 cut(s)	257
Sse9I	AATT	5 cut(s)	20, 94, 366, 661, 714
SspMI	CTAG	3 cut(s)	354, 510, 572
SstI	GAGCTC	1 cut(s)	58
TaqI	TCGA	1 cut(s)	492
TasI	AATT	5 cut(s)	20, 94, 366, 661, 714
TatI	WGTACW	1 cut(s)	413
TfiI	GAWTC	1 cut(s)	262
Tru1I	TTAA	3 cut(s)	33, 285, 696
Tru9I	TTAA	3 cut(s)	33, 285, 696
TseI	GCWGC	3 cut(s)	16, 362, 649
TspDTI	ATGAA	8 cut(s)	54, 264, 324, 333, 342, 473, 578, 714
XapI	RAATTY	2 cut(s)	94, 714
XceI	RCATGY	1 cut(s)	615
XspI	CTAG	3 cut(s)	354, 510, 572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.