Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0014716

Physical Location & Seq

Genomic Coordinates Reverse (-)

28128540 .. 28129063

Gene Structure 524 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG263500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGATACAGAATGGATATATTATCCCAGAAACTCTGAAACCTACCGTGCTGGAGCCCAATTGTATGTTGATAGACTTCACACCAGCTTGGGGAATCTAGCTATCATGCAATGCCCTTGTCGCCTCTGCAAAAATATGCAGTGGCATTCCCCTAAGTTAGTTTTTGGTCACTTGTGCATGAATGAGATCCATCCTCTTCATGTTAGTCAGATCTTACATGGTGAGTTGACAACATATGTACAAGAAGAGAATGTTCAAGTTCCAGAAACGTACAGAATTTTGAAAGATGCATACTTTCAAGATGATGTTGTTATGGAACCTGAAAATGAAAGGAATGAGGCTGACTTTAGAGATATATTAGAGGAGGCAGAACTACGATTATATTCAGGGTCTGATTTTACTAAGATTTCTTCCACAGTTTCCTTGTTTAAGTATAAGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005732 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0032040 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0044085 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BING4CT WD40

Protein Analysis

147

Amino Acids

17.27

Weight (kDa)

5.17

Isoelectric Point (pI)

29.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transpos_assoc	PF13963	4 - 75	2.1e-10	Transposase-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0014716)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g16175
rosa_multiflora	Rmu_sc0000633.1_g000011 Rmu_sc0001320.1_g000013 Rmu_sc0002244.1_g000023 Rmu_sc0002662.1_g000007 Rmu_sc0003152.1_g000001 Rmu_sc0004596.1_g000037
rosa_roxburghii	Rroxscaffold_2G00105670 Rroxscaffold_5G00368480
rosa_samantha	Rh2DG504200 Rh3CG072100 Rh5CG263500 Rh5CG466600 Rh5DG558700 Rh6CG061600 Rh7BG187700
rosa_wichuraiana	Rw7G035340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	181
AcsI	RAATTY	1 cut(s)	276
AfaI	GTAC	2 cut(s)	240, 272
AfiI	CCNNNNNNNGG	1 cut(s)	90
AgsI	TTSAA	3 cut(s)	257, 283, 299
AluBI	AGCT	2 cut(s)	87, 101
AluI	AGCT	2 cut(s)	87, 101
AlwI	GGATC	1 cut(s)	181
AlwNI	CAGNNNCTG	1 cut(s)	392
ApoI	RAATTY	1 cut(s)	276
AsuHPI	GGTGA	1 cut(s)	233
BanII	GRGCYC	1 cut(s)	58
BccI	CCATC	1 cut(s)	198
BfaI	CTAG	1 cut(s)	98
BglII	AGATCT	1 cut(s)	210
BmiI	GGNNCC	2 cut(s)	55, 318
BmsI	GCATC	1 cut(s)	277
BpmI	CTGGAG	1 cut(s)	72
Bsc4I	CCNNNNNNNGG	1 cut(s)	90
Bse3DI	GCAATG	1 cut(s)	116
BseGI	GGATG	1 cut(s)	190
BseLI	CCNNNNNNNGG	1 cut(s)	90
BseMI	GCAATG	1 cut(s)	116
BseRI	GAGGAG	1 cut(s)	377
BslI	CCNNNNNNNGG	1 cut(s)	90
BsmI	GAATGC	1 cut(s)	145
Bsp1286I	GDGCHC	1 cut(s)	58
Bsp1407I	TGTACA	1 cut(s)	238
Bsp143I	GATC	2 cut(s)	186, 210
BspLI	GGNNCC	2 cut(s)	55, 318
BspPI	GGATC	1 cut(s)	181
BsrDI	GCAATG	1 cut(s)	116
BsrGI	TGTACA	1 cut(s)	238
BssMI	GATC	2 cut(s)	186, 210
Bst4CI	ACNGT	2 cut(s)	47, 418
Bst6I	CTCTTC	2 cut(s)	201, 240
BstAUI	TGTACA	1 cut(s)	238
BstDEI	CTNAG	2 cut(s)	153, 402
BstF5I	GGATG	1 cut(s)	190
BstKTI	GATC	2 cut(s)	189, 213
BstMBI	GATC	2 cut(s)	186, 210
BstMWI	GCNNNNNNNGC	1 cut(s)	120
BstX2I	RGATCY	2 cut(s)	186, 210
BstYI	RGATCY	2 cut(s)	186, 210
BtsCI	GGATG	1 cut(s)	190
BtsI	GCAGTG	1 cut(s)	146
BtsIMutI	CAGTG	1 cut(s)	146
CaiI	CAGNNNCTG	1 cut(s)	392
Csp6I	GTAC	2 cut(s)	239, 271
CviAII	CATG	4 cut(s)	106, 178, 200, 218
CviJI	RGCY	5 cut(s)	56, 87, 101, 341, 440
CviKI_1	RGCY	5 cut(s)	56, 87, 101, 341, 440
CviQI	GTAC	2 cut(s)	239, 271
DdeI	CTNAG	2 cut(s)	153, 402
DpnI	GATC	2 cut(s)	188, 212
DpnII	GATC	2 cut(s)	186, 210
Eam1104I	CTCTTC	2 cut(s)	201, 240
EarI	CTCTTC	2 cut(s)	201, 240
Eco24I	GRGCYC	1 cut(s)	58
EcoT22I	ATGCAT	1 cut(s)	292
EcoT38I	GRGCYC	1 cut(s)	58
FaeI	CATG	4 cut(s)	109, 181, 203, 221
FatI	CATG	4 cut(s)	105, 177, 199, 217
FauNDI	CATATG	1 cut(s)	235
FokI	GGATG	1 cut(s)	177
FriOI	GRGCYC	1 cut(s)	58
FspBI	CTAG	1 cut(s)	98
GsuI	CTGGAG	1 cut(s)	72
Hin1II	CATG	4 cut(s)	109, 181, 203, 221
HincII	GTYRAC	1 cut(s)	228
HindII	GTYRAC	1 cut(s)	228
HinfI	GANTC	1 cut(s)	94
HphI	GGTGA	1 cut(s)	233
Hpy166II	GTNNAC	1 cut(s)	228
Hpy188I	TCNGA	3 cut(s)	37, 210, 394
Hpy188III	TCNNGA	2 cut(s)	263, 299
Hpy8I	GTNNAC	1 cut(s)	228
HpyCH4III	ACNGT	2 cut(s)	47, 418
HpyCH4IV	ACGT	1 cut(s)	269
HpyCH4V	TGCA	5 cut(s)	109, 129, 139, 177, 290
HpyF10VI	GCNNNNNNNGC	1 cut(s)	120
HpyF3I	CTNAG	2 cut(s)	153, 402
HpySE526I	ACGT	1 cut(s)	269
Hsp92II	CATG	4 cut(s)	109, 181, 203, 221
Kzo9I	GATC	2 cut(s)	186, 210
LmnI	GCTCC	1 cut(s)	53
LpnPI	CCDG	6 cut(s)	36, 40, 97, 276, 333, 372
LweI	GCATC	1 cut(s)	277
MaeI	CTAG	1 cut(s)	98
MaeII	ACGT	1 cut(s)	269
MaeIII	GTNAC	1 cut(s)	167
MalI	GATC	2 cut(s)	188, 212
MboI	GATC	2 cut(s)	186, 210
MboII	GAAGA	3 cut(s)	188, 257, 402
MfeI	CAATTG	1 cut(s)	59
MflI	RGATCY	2 cut(s)	186, 210
MhlI	GDGCHC	1 cut(s)	58
MluCI	AATT	2 cut(s)	59, 276
MnlI	CCTC	5 cut(s)	134, 204, 331, 355, 358
Mph1103I	ATGCAT	1 cut(s)	292
MseI	TTAA	1 cut(s)	429
MunI	CAATTG	1 cut(s)	59
Mva1269I	GAATGC	1 cut(s)	145
MwoI	GCNNNNNNNGC	1 cut(s)	120
NdeI	CATATG	1 cut(s)	235
NdeII	GATC	2 cut(s)	186, 210
NlaIII	CATG	4 cut(s)	109, 181, 203, 221
NlaIV	GGNNCC	2 cut(s)	55, 318
NmuCI	GTSAC	1 cut(s)	167
NsiI	ATGCAT	1 cut(s)	292
PctI	GAATGC	1 cut(s)	145
PfeI	GAWTC	1 cut(s)	94
PspN4I	GGNNCC	2 cut(s)	55, 318
PstNI	CAGNNNCTG	1 cut(s)	392
PsuI	RGATCY	2 cut(s)	186, 210
RsaI	GTAC	2 cut(s)	240, 272
RsaNI	GTAC	2 cut(s)	239, 271
SaqAI	TTAA	1 cut(s)	429
Sau3AI	GATC	2 cut(s)	186, 210
SduI	GDGCHC	1 cut(s)	58
SetI	ASST	5 cut(s)	44, 89, 103, 272, 322
SfaNI	GCATC	1 cut(s)	277
Sse9I	AATT	2 cut(s)	59, 276
SspMI	CTAG	1 cut(s)	98
TaaI	ACNGT	2 cut(s)	47, 418
TaiI	ACGT	1 cut(s)	272
TasI	AATT	2 cut(s)	59, 276
TatI	WGTACW	1 cut(s)	238
TfiI	GAWTC	1 cut(s)	94
Tru1I	TTAA	1 cut(s)	429
Tru9I	TTAA	1 cut(s)	429
TscAI	CASTG	1 cut(s)	146
TseFI	GTSAC	1 cut(s)	167
Tsp45I	GTSAC	1 cut(s)	167
TspDTI	ATGAA	3 cut(s)	188, 194, 342
TspRI	CASTG	1 cut(s)	146
XapI	RAATTY	1 cut(s)	276
XspI	CTAG	1 cut(s)	98
Zsp2I	ATGCAT	1 cut(s)	292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.