Rh6CG061600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0014716
Physical Location & Seq
Forward (+)
6107998 .. 6115154
7157 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG061600.1

Sequence Viewer

Length: 414 bp
ATGGGGAATCCAGAAAGGATTCTCTGTCCTTATAACAATTGTATAAGTTTCAAACGCCACAACTTTAATGTAGTATATGACCACTTGATCTGTTATGGGATAGATCCTCTTTATAGTAGGTGGACATGGCATGGGGATGAGCCAACATTACCGGATGAAAATGTTGAAATGCCTGAAACATATAGAATGTTTCAGGATGCACTTTTTGAAGATAATGGTGCATTTTCTGAAGATAATGATGTTAGGGAACCTGGAGATGAAAGAGGAGAGCCTGATTTTGGGCATTTATTGAAGGAGGCAGAACGTCCTATCTATAAAGGCTCTACTTTGTCAAAAATGTCGGCAACAGCAGCTATGATTGTTTCCAAAACATCTTTTTGCAAAAAACATTGGTGTTTAATTATTAATACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 Transpos_assoc

Protein Analysis

137

Amino Acids

15.87

Weight (kDa)

5.03

Isoelectric Point (pI)

36.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transpos_assoc PF13963 5 - 45 1.1e-08 Transposase-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 33
AclWI GGATC 1 cut(s) 98
AcuI CTGAAG 1 cut(s) 249
AfiI CCNNNNNNNGG 1 cut(s) 278
AgsI TTSAA 4 cut(s) 52, 167, 209, 292
AjnI CCWGG 1 cut(s) 250
AluBI AGCT 1 cut(s) 353
AluI AGCT 1 cut(s) 353
AlwI GGATC 1 cut(s) 98
ApeKI GCWGC 1 cut(s) 350
AseI ATTAAT 1 cut(s) 405
Asp700I GAANNNNTTC 1 cut(s) 18
BbvI GCAGC 1 cut(s) 362
BciT130I CCWGG 1 cut(s) 252
BisI GCNGC 1 cut(s) 351
BlsI GCNGC 1 cut(s) 352
Bme1390I CCNGG 1 cut(s) 252
BmiI GGNNCC 1 cut(s) 249
BmrFI CCNGG 1 cut(s) 252
BmsI GCATC 1 cut(s) 187
BpmI CTGGAG 1 cut(s) 273
BsaWI WCCGGW 1 cut(s) 151
Bsc4I CCNNNNNNNGG 1 cut(s) 278
BseBI CCWGG 1 cut(s) 252
BseGI GGATG 3 cut(s) 142, 160, 202
BseLI CCNNNNNNNGG 1 cut(s) 278
BseRI GAGGAG 1 cut(s) 279
BseXI GCAGC 1 cut(s) 362
BsiSI CCGG 1 cut(s) 152
BslI CCNNNNNNNGG 1 cut(s) 278
Bsp143I GATC 2 cut(s) 87, 103
BspLI GGNNCC 1 cut(s) 249
BspPI GGATC 1 cut(s) 98
BssMI GATC 2 cut(s) 87, 103
Bst2UI CCWGG 1 cut(s) 252
BstF5I GGATG 3 cut(s) 142, 160, 202
BstKTI GATC 2 cut(s) 90, 106
BstMBI GATC 2 cut(s) 87, 103
BstMWI GCNNNNNNNGC 1 cut(s) 350
BstNI CCWGG 1 cut(s) 252
BstSCI CCNGG 1 cut(s) 250
BstV1I GCAGC 1 cut(s) 362
BstX2I RGATCY 1 cut(s) 103
BstYI RGATCY 1 cut(s) 103
BtsCI GGATG 3 cut(s) 142, 160, 202
CviAII CATG 2 cut(s) 126, 131
CviJI RGCY 4 cut(s) 142, 271, 321, 353
CviKI_1 RGCY 4 cut(s) 142, 271, 321, 353
DpnI GATC 2 cut(s) 89, 105
DpnII GATC 2 cut(s) 87, 103
Eco57I CTGAAG 1 cut(s) 249
EcoRII CCWGG 1 cut(s) 250
FaeI CATG 2 cut(s) 129, 134
FatI CATG 2 cut(s) 125, 130
Fnu4HI GCNGC 1 cut(s) 351
FokI GGATG 3 cut(s) 149, 167, 209
Fsp4HI GCNGC 1 cut(s) 351
GluI GCNGC 1 cut(s) 351
GsuI CTGGAG 1 cut(s) 273
HapII CCGG 1 cut(s) 152
Hin1II CATG 2 cut(s) 129, 134
HinfI GANTC 2 cut(s) 7, 19
HpaII CCGG 1 cut(s) 152
Hpy166II GTNNAC 1 cut(s) 123
Hpy188I TCNGA 1 cut(s) 229
Hpy188III TCNNGA 2 cut(s) 11, 194
Hpy8I GTNNAC 1 cut(s) 123
HpyAV CCTTC 1 cut(s) 286
HpyCH4IV ACGT 1 cut(s) 304
HpyCH4V TGCA 3 cut(s) 200, 221, 381
HpyF10VI GCNNNNNNNGC 1 cut(s) 350
HpySE526I ACGT 1 cut(s) 304
Hsp92II CATG 2 cut(s) 129, 134
Kzo9I GATC 2 cut(s) 87, 103
LpnPI CCDG 7 cut(s) 24, 165, 179, 186, 237, 264, 285
Lsp1109I GCAGC 1 cut(s) 362
LweI GCATC 1 cut(s) 187
MaeII ACGT 1 cut(s) 304
MalI GATC 2 cut(s) 89, 105
MboI GATC 2 cut(s) 87, 103
MboII GAAGA 2 cut(s) 221, 242
MfeI CAATTG 1 cut(s) 37
MflI RGATCY 1 cut(s) 103
MluCI AATT 2 cut(s) 37, 399
MnlI CCTC 3 cut(s) 117, 257, 289
MroXI GAANNNNTTC 1 cut(s) 18
MseI TTAA 3 cut(s) 66, 398, 405
MslI CAYNNNNRTG 1 cut(s) 135
MspI CCGG 1 cut(s) 152
MspR9I CCNGG 1 cut(s) 252
MunI CAATTG 1 cut(s) 37
MvaI CCWGG 1 cut(s) 252
MwoI GCNNNNNNNGC 1 cut(s) 350
NdeII GATC 2 cut(s) 87, 103
NlaIII CATG 2 cut(s) 129, 134
NlaIV GGNNCC 1 cut(s) 249
PdmI GAANNNNTTC 1 cut(s) 18
PfeI GAWTC 2 cut(s) 7, 19
PkrI GCNGC 1 cut(s) 352
PshBI ATTAAT 1 cut(s) 405
PsiI TTATAA 1 cut(s) 33
Psp6I CCWGG 1 cut(s) 250
PspGI CCWGG 1 cut(s) 250
PspN4I GGNNCC 1 cut(s) 249
PsuI RGATCY 1 cut(s) 103
RseI CAYNNNNRTG 1 cut(s) 135
SaqAI TTAA 3 cut(s) 66, 398, 405
SatI GCNGC 1 cut(s) 351
Sau3AI GATC 2 cut(s) 87, 103
ScrFI CCNGG 1 cut(s) 252
SetI ASST 4 cut(s) 122, 253, 307, 355
SfaNI GCATC 1 cut(s) 187
SmiMI CAYNNNNRTG 1 cut(s) 135
Sse9I AATT 2 cut(s) 37, 399
StyD4I CCNGG 1 cut(s) 250
TaiI ACGT 1 cut(s) 307
TasI AATT 2 cut(s) 37, 399
TfiI GAWTC 2 cut(s) 7, 19
Tru1I TTAA 3 cut(s) 66, 398, 405
Tru9I TTAA 3 cut(s) 66, 398, 405
TseI GCWGC 1 cut(s) 350
TspDTI ATGAA 2 cut(s) 171, 273
VspI ATTAAT 1 cut(s) 405
XmnI GAANNNNTTC 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.