Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003152.1

Orthogroup ID

OG0014716

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 888

Gene Structure 887 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003152.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 887 bp

atggataagagctggataaaatataagtcaaatagtgcagagtaccgagaaggtgttagacaatttgtcttgaattccaagcggtatgcaaggaatcctgagatgattatttgtccttgcgtaatttgtcgaaaccttagcccacaaactgatgatgacttggtcatacatttgatgagatacggcgttgatcctggatacgatatttggtgtgcacatggtgaagatgcaagtacatctgtccaagttgaagattgtgaaatgtcagatcactttgatgtggattatgaacttccagaagtgcatcaaatgtataaggacgcatgcttccctttttctgatggagctggaagctcaaggactataaatatagaggaagagtataaaaagaaagtggaggaggctgaagttcctctatttccagggtgtaagaagcacacaaaactatcagccacccttgtattgtacaaattcaaagctgccaatggccttgctaactcagcttttgatgaattgctgttggaaatcaaagacatgctaccagaagttaatacttttcctgaatttttgtacacaataaaaaagtttttgaaaggatttgatttagggtatgagaagattcatgcatgcatcaacgactgctgcctgttcagaaaagagaaagagcacatggagagatgtcccaaatgtgatgcttcgaggtggaaagcaaattcacggactaaaaagataaataagggagttcctgcaaaggtcctgcgctactttcctatagttccaaggattcaaaggatgtttctttcagcaaaaataggtgagcaattaacttggcactctactcatcacagtcaagatggcatgatgcgtcatccagttgactctattca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4216 DUF4218 Transpos_assoc Transposase_21

Protein Analysis

295

Amino Acids

34.12

Weight (kDa)

6.82

Isoelectric Point (pI)

40.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014716)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g16175
rosa_multiflora	Rmu_sc0000633.1_g000011 Rmu_sc0001320.1_g000013 Rmu_sc0002244.1_g000023 Rmu_sc0002662.1_g000007 Rmu_sc0003152.1_g000001 Rmu_sc0004596.1_g000037
rosa_roxburghii	Rroxscaffold_2G00105670 Rroxscaffold_5G00368480
rosa_samantha	Rh2DG504200 Rh3CG072100 Rh5CG263500 Rh5CG466600 Rh5DG558700 Rh6CG061600 Rh7BG187700
rosa_wichuraiana	Rw7G035340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	82
AclWI	GGATC	1 cut(s)	185
AcsI	RAATTY	4 cut(s)	73, 470, 563, 712
AcuI	CTGAAG	1 cut(s)	426
AdeI	CACNNNGTG	1 cut(s)	221
AfaI	GTAC	4 cut(s)	44, 235, 467, 572
AgsI	TTSAA	5 cut(s)	73, 251, 475, 592, 788
AhdI	GACNNNNNGTC	1 cut(s)	65
AjnI	CCWGG	2 cut(s)	193, 421
AluBI	AGCT	5 cut(s)	12, 347, 354, 479, 503
AluI	AGCT	5 cut(s)	12, 347, 354, 479, 503
Alw21I	GWGCWC	2 cut(s)	217, 669
Alw44I	GTGCAC	1 cut(s)	213
AlwI	GGATC	1 cut(s)	185
AoxI	GGCC	1 cut(s)	487
ApaLI	GTGCAC	1 cut(s)	213
ApeKI	GCWGC	2 cut(s)	479, 642
ApoI	RAATTY	4 cut(s)	73, 470, 563, 712
AspLEI	GCGC	1 cut(s)	762
AspS9I	GGNCC	1 cut(s)	754
AsuHPI	GGTGA	2 cut(s)	233, 827
AvaII	GGWCC	1 cut(s)	754
BaeGI	GKGCMC	1 cut(s)	217
Bbv12I	GWGCWC	2 cut(s)	217, 669
BbvI	GCAGC	2 cut(s)	466, 629
BccI	CCATC	2 cut(s)	335, 848
BceAI	ACGGC	1 cut(s)	199
BciT130I	CCWGG	2 cut(s)	195, 423
BciVI	GTATCC	1 cut(s)	191
BfmI	CTRYAG	1 cut(s)	771
BfuI	GTATCC	1 cut(s)	191
BisI	GCNGC	2 cut(s)	480, 643
BlsI	GCNGC	2 cut(s)	481, 644
Bme1390I	CCNGG	2 cut(s)	195, 423
Bme18I	GGWCC	1 cut(s)	754
BmeRI	GACNNNNNGTC	1 cut(s)	65
BmgT120I	GGNCC	1 cut(s)	754
BmrFI	CCNGG	2 cut(s)	195, 423
BmsI	GCATC	5 cut(s)	217, 313, 639, 682, 852
Bpu10I	CCTNAGC	1 cut(s)	137
BpuEI	CTTGAG	1 cut(s)	340
BsaJI	CCNNGG	2 cut(s)	422, 779
Bse1I	ACTGG	1 cut(s)	872
BseBI	CCWGG	2 cut(s)	195, 423
BseDI	CCNNGG	2 cut(s)	422, 779
BseGI	GGATG	2 cut(s)	798, 868
BseMII	CTCAG	2 cut(s)	90, 513
BseNI	ACTGG	1 cut(s)	872
BseRI	GAGGAG	1 cut(s)	413
BseSI	GKGCMC	1 cut(s)	217
BseXI	GCAGC	2 cut(s)	466, 629
BsgI	GTGCAG	1 cut(s)	57
BshFI	GGCC	1 cut(s)	489
BsiHKAI	GWGCWC	2 cut(s)	217, 669
BslFI	GGGAC	1 cut(s)	666
BsmFI	GGGAC	1 cut(s)	666
BsnI	GGCC	1 cut(s)	489
Bsp1286I	GDGCHC	2 cut(s)	217, 669
Bsp1407I	TGTACA	2 cut(s)	465, 570
Bsp143I	GATC	2 cut(s)	190, 268
BspACI	CCGC	1 cut(s)	82
BspANI	GGCC	1 cut(s)	489
BspCNI	CTCAG	2 cut(s)	91, 512
BspPI	GGATC	1 cut(s)	185
BsrGI	TGTACA	2 cut(s)	465, 570
BsrI	ACTGG	1 cut(s)	872
BssECI	CCNNGG	2 cut(s)	422, 779
BssMI	GATC	2 cut(s)	190, 268
BssT1I	CCWWGG	1 cut(s)	779
Bst2UI	CCWGG	2 cut(s)	195, 423
Bst4CI	ACNGT	1 cut(s)	848
Bst6I	CTCTTC	1 cut(s)	372
BstAUI	TGTACA	2 cut(s)	465, 570
BstC8I	GCNNGC	2 cut(s)	325, 628
BstDEI	CTNAG	3 cut(s)	99, 137, 499
BstF5I	GGATG	2 cut(s)	798, 868
BstHHI	GCGC	1 cut(s)	762
BstKTI	GATC	2 cut(s)	193, 271
BstMBI	GATC	2 cut(s)	190, 268
BstMWI	GCNNNNNNNGC	1 cut(s)	500
BstNI	CCWGG	2 cut(s)	195, 423
BstNSI	RCATGY	3 cut(s)	327, 538, 630
BstSCI	CCNGG	2 cut(s)	193, 421
BstSFI	CTRYAG	1 cut(s)	771
BstSLI	GKGCMC	1 cut(s)	217
BstV1I	GCAGC	2 cut(s)	466, 629
BsuI	GTATCC	1 cut(s)	191
BsuRI	GGCC	1 cut(s)	489
BtsCI	GGATG	2 cut(s)	798, 868
Cac8I	GCNNGC	2 cut(s)	325, 628
CfoI	GCGC	1 cut(s)	762
Cfr13I	GGNCC	1 cut(s)	754
CseI	GACGC	2 cut(s)	329, 854
Csp6I	GTAC	4 cut(s)	43, 234, 466, 571
CviAII	CATG	7 cut(s)	218, 324, 535, 623, 627, 670, 859
CviJI	RGCY	9 cut(s)	12, 141, 347, 354, 404, 452, 479, 489, 503
CviKI_1	RGCY	9 cut(s)	12, 141, 347, 354, 404, 452, 479, 489, 503
CviQI	GTAC	4 cut(s)	43, 234, 466, 571
DdeI	CTNAG	3 cut(s)	99, 137, 499
DpnI	GATC	2 cut(s)	192, 270
DpnII	GATC	2 cut(s)	190, 268
DraIII	CACNNNGTG	1 cut(s)	221
DriI	GACNNNNNGTC	1 cut(s)	65
Eam1104I	CTCTTC	1 cut(s)	372
Eam1105I	GACNNNNNGTC	1 cut(s)	65
EarI	CTCTTC	1 cut(s)	372
Eco130I	CCWWGG	1 cut(s)	779
Eco47I	GGWCC	1 cut(s)	754
Eco57I	CTGAAG	1 cut(s)	426
EcoO109I	RGGNCCY	1 cut(s)	754
EcoRI	GAATTC	1 cut(s)	73
EcoRII	CCWGG	2 cut(s)	193, 421
EcoT14I	CCWWGG	1 cut(s)	779
EcoT22I	ATGCAT	2 cut(s)	628, 632
ErhI	CCWWGG	1 cut(s)	779
FaeI	CATG	7 cut(s)	221, 327, 538, 626, 630, 673, 862
FaqI	GGGAC	1 cut(s)	666
FatI	CATG	7 cut(s)	217, 323, 534, 622, 626, 669, 858
Fnu4HI	GCNGC	2 cut(s)	480, 643
FokI	GGATG	2 cut(s)	805, 855
Fsp4HI	GCNGC	2 cut(s)	480, 643
GlaI	GCGC	1 cut(s)	761
GluI	GCNGC	2 cut(s)	480, 643
HaeIII	GGCC	1 cut(s)	489
HgaI	GACGC	2 cut(s)	329, 854
HhaI	GCGC	1 cut(s)	762
Hin1II	CATG	7 cut(s)	221, 327, 538, 626, 630, 673, 862
Hin6I	GCGC	1 cut(s)	760
HinP1I	GCGC	1 cut(s)	760
HincII	GTYRAC	1 cut(s)	877
HindII	GTYRAC	1 cut(s)	877
HinfI	GANTC	4 cut(s)	94, 619, 784, 878
HphI	GGTGA	2 cut(s)	233, 827
Hpy166II	GTNNAC	3 cut(s)	215, 573, 877
Hpy188I	TCNGA	3 cut(s)	268, 340, 653
Hpy188III	TCNNGA	5 cut(s)	70, 98, 296, 560, 851
Hpy8I	GTNNAC	3 cut(s)	215, 573, 877
HpyAV	CCTTC	1 cut(s)	44
HpyCH4III	ACNGT	1 cut(s)	848
HpyCH4V	TGCA	8 cut(s)	38, 89, 215, 230, 304, 626, 630, 749
HpyF10VI	GCNNNNNNNGC	1 cut(s)	500
HpyF3I	CTNAG	3 cut(s)	99, 137, 499
Hsp92II	CATG	7 cut(s)	221, 327, 538, 626, 630, 673, 862
HspAI	GCGC	1 cut(s)	760
Kzo9I	GATC	2 cut(s)	190, 268
LmnI	GCTCC	1 cut(s)	344
Lsp1109I	GCAGC	2 cut(s)	466, 629
LweI	GCATC	5 cut(s)	217, 313, 639, 682, 852
MalI	GATC	2 cut(s)	192, 270
MboI	GATC	2 cut(s)	190, 268
MboII	GAAGA	4 cut(s)	236, 263, 389, 628
MhlI	GDGCHC	2 cut(s)	217, 669
MluCI	AATT	8 cut(s)	62, 73, 123, 470, 512, 563, 712, 821
MlyI	GAGTC	1 cut(s)	872
MmeI	TCCRAC	1 cut(s)	501
MnlI	CCTC	5 cut(s)	367, 391, 394, 423, 693
Mph1103I	ATGCAT	2 cut(s)	628, 632
MseI	TTAA	2 cut(s)	549, 824
MslI	CAYNNNNRTG	1 cut(s)	276
MspR9I	CCNGG	2 cut(s)	195, 423
MvaI	CCWGG	2 cut(s)	195, 423
MwoI	GCNNNNNNNGC	1 cut(s)	500
NdeII	GATC	2 cut(s)	190, 268
NlaIII	CATG	7 cut(s)	221, 327, 538, 626, 630, 673, 862
NsiI	ATGCAT	2 cut(s)	628, 632
NspI	RCATGY	3 cut(s)	327, 538, 630
PaeI	GCATGC	2 cut(s)	327, 630
PfeI	GAWTC	3 cut(s)	94, 619, 784
PflFI	GACNNNGTC	1 cut(s)	161
PfoI	TCCNGGA	1 cut(s)	193
PkrI	GCNGC	2 cut(s)	481, 644
PleI	GAGTC	1 cut(s)	872
PpsI	GAGTC	1 cut(s)	872
PpuMI	RGGWCCY	1 cut(s)	754
Psp5II	RGGWCCY	1 cut(s)	754
Psp6I	CCWGG	2 cut(s)	193, 421
PspGI	CCWGG	2 cut(s)	193, 421
PspPI	GGNCC	1 cut(s)	754
PspPPI	RGGWCCY	1 cut(s)	754
PsyI	GACNNNGTC	1 cut(s)	161
RsaI	GTAC	4 cut(s)	44, 235, 467, 572
RsaNI	GTAC	4 cut(s)	43, 234, 466, 571
RseI	CAYNNNNRTG	1 cut(s)	276
SaqAI	TTAA	2 cut(s)	549, 824
SatI	GCNGC	2 cut(s)	480, 643
Sau3AI	GATC	2 cut(s)	190, 268
Sau96I	GGNCC	1 cut(s)	754
SchI	GAGTC	1 cut(s)	872
ScrFI	CCNGG	2 cut(s)	195, 423
SduI	GDGCHC	2 cut(s)	217, 669
SfaNI	GCATC	5 cut(s)	217, 313, 639, 682, 852
SfcI	CTRYAG	1 cut(s)	771
SinI	GGWCC	1 cut(s)	754
SmiMI	CAYNNNNRTG	1 cut(s)	276
SmlI	CTYRAG	1 cut(s)	355
SmoI	CTYRAG	1 cut(s)	355
SphI	GCATGC	2 cut(s)	327, 630
Sse9I	AATT	8 cut(s)	62, 73, 123, 470, 512, 563, 712, 821
SsiI	CCGC	1 cut(s)	82
StyD4I	CCNGG	2 cut(s)	193, 421
StyI	CCWWGG	1 cut(s)	779
TaaI	ACNGT	1 cut(s)	848
TaqI	TCGA	2 cut(s)	130, 698
TasI	AATT	8 cut(s)	62, 73, 123, 470, 512, 563, 712, 821
TatI	WGTACW	3 cut(s)	233, 465, 570
TfiI	GAWTC	3 cut(s)	94, 619, 784
Tru1I	TTAA	2 cut(s)	549, 824
Tru9I	TTAA	2 cut(s)	549, 824
TseI	GCWGC	2 cut(s)	479, 642
TspDTI	ATGAA	3 cut(s)	303, 525, 611
TspGWI	ACGGA	1 cut(s)	733
Tth111I	GACNNNGTC	1 cut(s)	161
VneI	GTGCAC	1 cut(s)	213
VpaK11BI	GGWCC	1 cut(s)	754
XapI	RAATTY	4 cut(s)	73, 470, 563, 712
XceI	RCATGY	3 cut(s)	327, 538, 630
Zsp2I	ATGCAT	2 cut(s)	628, 632

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.