Rh7BG187700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0014716
Physical Location & Seq
Reverse (-)
15144828 .. 15145634
807 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG187700.1

Sequence Viewer

Length: 807 bp
ATGGAGAAAGAATGGCTGCAATTTGATAGATTTAAGGATGAATACAGAGTGGGAGCTCGTATGTTTGTGGATAAAGCAAGGGCAGATTATGGGAATTCTGAAGATGAGATTATATGCCCATGTATCAAATGTAGAAACTCTGAACACCACCACTTTGAGATAGTCTATGAGCACTTGGTAACAAGAGGAATGGATCCTACTTACAAAATTTGGATTTGTCATGGTGAAACAGGAAGTGAATCCAATCATGAAGATCTTGAGATTCCTGAGACATATAAGTTGTTTAAGGATTTATGTTTTCAACATGATGAAAATGATGAAGATGATGAAGATGTAGATGACACTATTGAGACTAGAGCGGCAGAAATTTTAAATTTAGTAAGAGAAGCTGAAACTCCCTTGTTCTTTGGCTGTACAAACTATACGAAGATGTCAGCATCAGTTGCTTTATTGAAGATGAAACCAAGACATTATTTGACTGATATTGCTTTCGATGACATTCTTCGCACTAGCCGTAGTTTCTTACCGGAAGATAACACACTTCCAGAGTCCTTATATTCAATGAAGAAGCTAGTGAAGGCATTTGATCTTGGATATGAGAAGATACATGCATGTGTCAATGATTGCTGTTTATTTAGAAAAGATTTGCAGCATCTGGAAAATTGTCCAAAGTGTGGTGCTTCAAGATGGAAACTTAATGAAAGCAGTTCTAAAATTCAAAAAGGCATCCCTGCAAAAGTTTTGCGTTACTTTCCAATAATACCAAGGCTTAGGAGAATGTTCCTGAAGGCCAAATCACAAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 Transpos_assoc

Protein Analysis

268

Amino Acids

31.38

Weight (kDa)

5.73

Isoelectric Point (pI)

40.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transpos_assoc PF13963 3 - 76 2.5e-19 Transposase-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 674
AccBSI CCGCTC 1 cut(s) 359
AciI CCGC 1 cut(s) 359
AclWI GGATC 2 cut(s) 188, 201
AcsI RAATTY 5 cut(s) 94, 207, 366, 373, 714
AcuI CTGAAG 2 cut(s) 120, 806
AfaI GTAC 1 cut(s) 415
AfiI CCNNNNNNNGG 1 cut(s) 674
AgsI TTSAA 5 cut(s) 302, 454, 561, 684, 719
AluBI AGCT 3 cut(s) 56, 389, 571
AluI AGCT 3 cut(s) 56, 389, 571
Alw21I GWGCWC 2 cut(s) 58, 174
Alw26I GTCTC 2 cut(s) 263, 344
AlwI GGATC 2 cut(s) 188, 201
AlwNI CAGNNNCTG 1 cut(s) 655
AoxI GGCC 1 cut(s) 789
ApeKI GCWGC 2 cut(s) 16, 649
ApoI RAATTY 5 cut(s) 94, 207, 366, 373, 714
AsuHPI GGTGA 1 cut(s) 236
BamHI GGATCC 1 cut(s) 193
BanII GRGCYC 1 cut(s) 58
Bbv12I GWGCWC 2 cut(s) 58, 174
BbvI GCAGC 2 cut(s) 3, 661
BccI CCATC 1 cut(s) 681
BceAI ACGGC 1 cut(s) 498
BcoDI GTCTC 2 cut(s) 263, 344
BfaI CTAG 3 cut(s) 354, 510, 572
BglII AGATCT 1 cut(s) 253
BisI GCNGC 3 cut(s) 17, 360, 650
BlsI GCNGC 3 cut(s) 18, 361, 651
BmiI GGNNCC 1 cut(s) 195
BmsI GCATC 3 cut(s) 446, 661, 735
Bpu10I CCTNAGC 1 cut(s) 770
BpuEI CTTGAG 1 cut(s) 278
BsaJI CCNNGG 1 cut(s) 764
BsaWI WCCGGW 1 cut(s) 526
Bsc4I CCNNNNNNNGG 1 cut(s) 674
BseDI CCNNGG 1 cut(s) 764
BseGI GGATG 2 cut(s) 43, 726
BseLI CCNNNNNNNGG 1 cut(s) 674
BseMII CTCAG 1 cut(s) 258
BseXI GCAGC 2 cut(s) 3, 661
BshFI GGCC 1 cut(s) 791
BsiHKAI GWGCWC 2 cut(s) 58, 174
BsiSI CCGG 1 cut(s) 527
BslI CCNNNNNNNGG 1 cut(s) 674
BsmAI GTCTC 2 cut(s) 263, 344
BsnI GGCC 1 cut(s) 791
Bsp1286I GDGCHC 2 cut(s) 58, 174
Bsp1407I TGTACA 1 cut(s) 413
Bsp143I GATC 3 cut(s) 193, 253, 586
BspACI CCGC 1 cut(s) 359
BspANI GGCC 1 cut(s) 791
BspCNI CTCAG 1 cut(s) 259
BspHI TCATGA 1 cut(s) 247
BspLI GGNNCC 1 cut(s) 195
BspPI GGATC 2 cut(s) 188, 201
BsrBI CCGCTC 1 cut(s) 359
BsrGI TGTACA 1 cut(s) 413
BssECI CCNNGG 1 cut(s) 764
BssMI GATC 3 cut(s) 193, 253, 586
BssT1I CCWWGG 1 cut(s) 764
BstAPI GCANNNNNTGC 1 cut(s) 443
BstAUI TGTACA 1 cut(s) 413
BstDEI CTNAG 2 cut(s) 267, 770
BstF5I GGATG 2 cut(s) 43, 726
BstKTI GATC 3 cut(s) 196, 256, 589
BstMAI GTCTC 2 cut(s) 263, 344
BstMBI GATC 3 cut(s) 193, 253, 586
BstMWI GCNNNNNNNGC 1 cut(s) 443
BstNSI RCATGY 2 cut(s) 611, 615
BstV1I GCAGC 2 cut(s) 3, 661
BstX2I RGATCY 2 cut(s) 193, 253
BstYI RGATCY 2 cut(s) 193, 253
BsuRI GGCC 1 cut(s) 791
BtsCI GGATG 2 cut(s) 43, 726
CaiI CAGNNNCTG 1 cut(s) 655
CciI TCATGA 1 cut(s) 247
Csp6I GTAC 1 cut(s) 414
CviAII CATG 6 cut(s) 120, 221, 248, 305, 608, 612
CviJI RGCY 8 cut(s) 16, 56, 389, 411, 513, 571, 769, 791
CviKI_1 RGCY 8 cut(s) 16, 56, 389, 411, 513, 571, 769, 791
CviQI GTAC 1 cut(s) 414
DdeI CTNAG 2 cut(s) 267, 770
DpnI GATC 3 cut(s) 195, 255, 588
DpnII GATC 3 cut(s) 193, 253, 586
DraI TTTAAA 1 cut(s) 372
Ecl136II GAGCTC 1 cut(s) 56
Eco130I CCWWGG 1 cut(s) 764
Eco24I GRGCYC 1 cut(s) 58
Eco53kI GAGCTC 1 cut(s) 56
Eco57I CTGAAG 2 cut(s) 120, 806
EcoICRI GAGCTC 1 cut(s) 56
EcoRI GAATTC 1 cut(s) 94
EcoT14I CCWWGG 1 cut(s) 764
EcoT22I ATGCAT 1 cut(s) 613
EcoT38I GRGCYC 1 cut(s) 58
ErhI CCWWGG 1 cut(s) 764
FaeI CATG 6 cut(s) 123, 224, 251, 308, 611, 615
FatI CATG 6 cut(s) 119, 220, 247, 304, 607, 611
Fnu4HI GCNGC 3 cut(s) 17, 360, 650
FokI GGATG 2 cut(s) 50, 713
FriOI GRGCYC 1 cut(s) 58
Fsp4HI GCNGC 3 cut(s) 17, 360, 650
FspBI CTAG 3 cut(s) 354, 510, 572
GluI GCNGC 3 cut(s) 17, 360, 650
HaeIII GGCC 1 cut(s) 791
HapII CCGG 1 cut(s) 527
Hin1II CATG 6 cut(s) 123, 224, 251, 308, 611, 615
HinfI GANTC 3 cut(s) 239, 262, 548
HpaII CCGG 1 cut(s) 527
HphI GGTGA 1 cut(s) 236
Hpy188I TCNGA 2 cut(s) 100, 142
Hpy188III TCNNGA 7 cut(s) 248, 257, 266, 545, 656, 684, 784
HpyAV CCTTC 2 cut(s) 571, 781
HpyCH4V TGCA 4 cut(s) 19, 611, 649, 734
HpyF10VI GCNNNNNNNGC 1 cut(s) 443
HpyF3I CTNAG 2 cut(s) 267, 770
Hsp92II CATG 6 cut(s) 123, 224, 251, 308, 611, 615
Kzo9I GATC 3 cut(s) 193, 253, 586
LmnI GCTCC 1 cut(s) 53
LpnPI CCDG 7 cut(s) 216, 279, 540, 558, 641, 744, 797
Lsp1109I GCAGC 2 cut(s) 3, 661
LweI GCATC 3 cut(s) 446, 661, 735
MaeI CTAG 3 cut(s) 354, 510, 572
MaeIII GTNAC 2 cut(s) 178, 746
MalI GATC 3 cut(s) 195, 255, 588
MbiI CCGCTC 1 cut(s) 359
MboI GATC 3 cut(s) 193, 253, 586
MflI RGATCY 2 cut(s) 193, 253
MhlI GDGCHC 2 cut(s) 58, 174
MluCI AATT 7 cut(s) 20, 94, 207, 366, 373, 661, 714
MlyI GAGTC 1 cut(s) 557
MnlI CCTC 1 cut(s) 179
Mph1103I ATGCAT 1 cut(s) 613
MseI TTAA 4 cut(s) 33, 285, 371, 696
MslI CAYNNNNRTG 2 cut(s) 612, 802
MspI CCGG 1 cut(s) 527
MwoI GCNNNNNNNGC 1 cut(s) 443
NdeII GATC 3 cut(s) 193, 253, 586
NlaIII CATG 6 cut(s) 123, 224, 251, 308, 611, 615
NlaIV GGNNCC 1 cut(s) 195
NsiI ATGCAT 1 cut(s) 613
NspI RCATGY 2 cut(s) 611, 615
PagI TCATGA 1 cut(s) 247
PcsI WCGNNNNNNNCGW 1 cut(s) 511
PfeI GAWTC 2 cut(s) 239, 262
PflMI CCANNNNNTGG 1 cut(s) 674
PkrI GCNGC 3 cut(s) 18, 361, 651
PleI GAGTC 1 cut(s) 556
PpsI GAGTC 1 cut(s) 556
Psp124BI GAGCTC 1 cut(s) 58
PspN4I GGNNCC 1 cut(s) 195
PstNI CAGNNNCTG 1 cut(s) 655
PsuI RGATCY 2 cut(s) 193, 253
RsaI GTAC 1 cut(s) 415
RsaNI GTAC 1 cut(s) 414
RseI CAYNNNNRTG 2 cut(s) 612, 802
SacI GAGCTC 1 cut(s) 58
SaqAI TTAA 4 cut(s) 33, 285, 371, 696
SatI GCNGC 3 cut(s) 17, 360, 650
Sau3AI GATC 3 cut(s) 193, 253, 586
SchI GAGTC 1 cut(s) 557
SduI GDGCHC 2 cut(s) 58, 174
SetI ASST 3 cut(s) 58, 391, 573
SfaNI GCATC 3 cut(s) 446, 661, 735
SmiMI CAYNNNNRTG 2 cut(s) 612, 802
SmlI CTYRAG 1 cut(s) 257
SmoI CTYRAG 1 cut(s) 257
Sse9I AATT 7 cut(s) 20, 94, 207, 366, 373, 661, 714
SsiI CCGC 1 cut(s) 359
SspMI CTAG 3 cut(s) 354, 510, 572
SstI GAGCTC 1 cut(s) 58
StyI CCWWGG 1 cut(s) 764
TaqI TCGA 1 cut(s) 492
TasI AATT 7 cut(s) 20, 94, 207, 366, 373, 661, 714
TatI WGTACW 1 cut(s) 413
TauI GCSGC 1 cut(s) 362
TfiI GAWTC 2 cut(s) 239, 262
Tru1I TTAA 4 cut(s) 33, 285, 371, 696
Tru9I TTAA 4 cut(s) 33, 285, 371, 696
TseI GCWGC 2 cut(s) 16, 649
TspDTI ATGAA 8 cut(s) 54, 264, 324, 333, 342, 473, 578, 714
Van91I CCANNNNNTGG 1 cut(s) 674
XapI RAATTY 5 cut(s) 94, 207, 366, 373, 714
XceI RCATGY 2 cut(s) 611, 615
XspI CTAG 3 cut(s) 354, 510, 572
Zsp2I ATGCAT 1 cut(s) 613
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.