Rroxscaffold_5G00368480

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0014716
Physical Location & Seq
Forward (+)
50249130 .. 50254669
5540 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00368480.1

Sequence Viewer

Length: 786 bp
ATGTTTGTGGATAAAGCAAGGGCAGATTATGGGAATTCTGAAGATGAGATTATATGCCCATGTATCAAATGTAGAAACTCTGAACACCACCACTTTGAGATAGTCTATGAGCACTTGGTGACAAGAGGAATGGATCCTACTTACAAAATTTGGATTTGTCATGGTGAAATAGGAAGTGAATCCATTCATGAAGATCTTGAGCTTCCTGAGACATATAAGTTGTTTAAGGATTTATGTTTTCAACATAATGAAAGTGATGAAGATGATGAAGATGTAGATGACACTATTGAGACTAAAGAGGCAGAAATTTTAAATTTAGTAAGAGAAGCTGAAACTCCCTTGTTCTTTGGCTGTACAAACTATACGAAGATGTCAGCATCAATTGCTTTATTGAAGATGAAAGCAAGACGCTGTTTGACTGATATTGCTTTCGATGACATTCTTCGCACTAGCCGTAGTTTCTTACCGGAAGATAACACACTTCCAGAGTCCTTATATTCAATAAAGAAGCTAGTGAAGGCATTTGATCTTGGATATGAGAAGATACACGTATGTGTCAATGATTGCTGTTTATTTAGAAAAGATTTGCAGCATCTGAAAAATTGTCCAAAGTGTGGTGCTTCAAGATGGAAACTTAATGAAAGCAGTTCTAAAATTAAAAAAGGCATCCCTGCAAAAGTTTTGCGTTACTTTCCAATAATACCAAGGCTTAGGAGAATGTTTGCTATTACTGAAAGAGCAGAACAATTAAGGTGGCATTCGAATAATAAGAGTCAAGATGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 Transpos_assoc

Protein Analysis

261

Amino Acids

30.37

Weight (kDa)

5.96

Isoelectric Point (pI)

50.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transpos_assoc PF13963 2 - 56 4.2e-14 Transposase-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 614
AclWI GGATC 2 cut(s) 128, 141
AcsI RAATTY 4 cut(s) 34, 147, 306, 313
AcuI CTGAAG 1 cut(s) 60
AdeI CACNNNGTG 1 cut(s) 118
AfaI GTAC 1 cut(s) 355
AfiI CCNNNNNNNGG 1 cut(s) 614
AflIII ACRYGT 1 cut(s) 547
AgsI TTSAA 4 cut(s) 242, 394, 501, 624
AleI CACNNNNGTG 1 cut(s) 552
AluBI AGCT 3 cut(s) 202, 329, 511
AluI AGCT 3 cut(s) 202, 329, 511
Alw21I GWGCWC 1 cut(s) 114
Alw26I GTCTC 2 cut(s) 203, 284
AlwI GGATC 2 cut(s) 128, 141
AlwNI CAGNNNCTG 1 cut(s) 595
ApeKI GCWGC 1 cut(s) 589
ApoI RAATTY 4 cut(s) 34, 147, 306, 313
Asp700I GAANNNNTTC 1 cut(s) 183
AsuHPI GGTGA 2 cut(s) 130, 176
AsuII TTCGAA 1 cut(s) 761
BamHI GGATCC 1 cut(s) 133
Bbv12I GWGCWC 1 cut(s) 114
BbvI GCAGC 1 cut(s) 601
BccI CCATC 2 cut(s) 621, 773
BceAI ACGGC 1 cut(s) 438
BcoDI GTCTC 2 cut(s) 203, 284
BfaI CTAG 2 cut(s) 450, 512
BglII AGATCT 1 cut(s) 193
BisI GCNGC 1 cut(s) 590
BlsI GCNGC 1 cut(s) 591
BmiI GGNNCC 1 cut(s) 135
BmsI GCATC 3 cut(s) 386, 601, 675
Bpu10I CCTNAGC 1 cut(s) 710
Bpu14I TTCGAA 1 cut(s) 761
BpuEI CTTGAG 1 cut(s) 218
BsaAI YACGTR 1 cut(s) 550
BsaJI CCNNGG 1 cut(s) 704
BsaWI WCCGGW 1 cut(s) 466
Bsc4I CCNNNNNNNGG 1 cut(s) 614
BseDI CCNNGG 1 cut(s) 704
BseGI GGATG 1 cut(s) 666
BseLI CCNNNNNNNGG 1 cut(s) 614
BseMII CTCAG 1 cut(s) 198
BseXI GCAGC 1 cut(s) 601
BsiHKAI GWGCWC 1 cut(s) 114
BsiSI CCGG 1 cut(s) 467
BslI CCNNNNNNNGG 1 cut(s) 614
BsmAI GTCTC 2 cut(s) 203, 284
BsmI GAATGC 1 cut(s) 757
Bsp119I TTCGAA 1 cut(s) 761
Bsp1286I GDGCHC 1 cut(s) 114
Bsp1407I TGTACA 1 cut(s) 353
Bsp143I GATC 3 cut(s) 133, 193, 526
BspCNI CTCAG 1 cut(s) 199
BspHI TCATGA 1 cut(s) 187
BspLI GGNNCC 1 cut(s) 135
BspPI GGATC 2 cut(s) 128, 141
BspT104I TTCGAA 1 cut(s) 761
BsrGI TGTACA 1 cut(s) 353
BssECI CCNNGG 1 cut(s) 704
BssMI GATC 3 cut(s) 133, 193, 526
BssT1I CCWWGG 1 cut(s) 704
BstAPI GCANNNNNTGC 1 cut(s) 383
BstAUI TGTACA 1 cut(s) 353
BstBAI YACGTR 1 cut(s) 550
BstBI TTCGAA 1 cut(s) 761
BstDEI CTNAG 2 cut(s) 207, 710
BstF5I GGATG 1 cut(s) 666
BstKTI GATC 3 cut(s) 136, 196, 529
BstMAI GTCTC 2 cut(s) 203, 284
BstMBI GATC 3 cut(s) 133, 193, 526
BstMWI GCNNNNNNNGC 1 cut(s) 383
BstV1I GCAGC 1 cut(s) 601
BstX2I RGATCY 2 cut(s) 133, 193
BstYI RGATCY 2 cut(s) 133, 193
BtsCI GGATG 1 cut(s) 666
CaiI CAGNNNCTG 1 cut(s) 595
CciI TCATGA 1 cut(s) 187
CseI GACGC 1 cut(s) 417
Csp6I GTAC 1 cut(s) 354
CspCI CAANNNNNGTGG 2 cut(s) 734, 769
CviAII CATG 3 cut(s) 60, 161, 188
CviJI RGCY 6 cut(s) 202, 329, 351, 453, 511, 709
CviKI_1 RGCY 6 cut(s) 202, 329, 351, 453, 511, 709
CviQI GTAC 1 cut(s) 354
DdeI CTNAG 2 cut(s) 207, 710
DpnI GATC 3 cut(s) 135, 195, 528
DpnII GATC 3 cut(s) 133, 193, 526
DraI TTTAAA 1 cut(s) 312
DraIII CACNNNGTG 1 cut(s) 118
Eco130I CCWWGG 1 cut(s) 704
Eco57I CTGAAG 1 cut(s) 60
EcoRI GAATTC 1 cut(s) 34
EcoT14I CCWWGG 1 cut(s) 704
ErhI CCWWGG 1 cut(s) 704
FaeI CATG 3 cut(s) 63, 164, 191
FatI CATG 3 cut(s) 59, 160, 187
Fnu4HI GCNGC 1 cut(s) 590
FokI GGATG 1 cut(s) 653
Fsp4HI GCNGC 1 cut(s) 590
FspBI CTAG 2 cut(s) 450, 512
GluI GCNGC 1 cut(s) 590
HapII CCGG 1 cut(s) 467
HgaI GACGC 1 cut(s) 417
Hin1II CATG 3 cut(s) 63, 164, 191
HinfI GANTC 3 cut(s) 179, 488, 772
HpaII CCGG 1 cut(s) 467
HphI GGTGA 2 cut(s) 130, 176
Hpy188I TCNGA 3 cut(s) 40, 82, 597
Hpy188III TCNNGA 6 cut(s) 188, 197, 206, 485, 624, 776
HpyAV CCTTC 1 cut(s) 511
HpyCH4IV ACGT 1 cut(s) 549
HpyCH4V TGCA 2 cut(s) 589, 674
HpyF10VI GCNNNNNNNGC 1 cut(s) 383
HpyF3I CTNAG 2 cut(s) 207, 710
HpySE526I ACGT 1 cut(s) 549
Hsp92II CATG 3 cut(s) 63, 164, 191
Kzo9I GATC 3 cut(s) 133, 193, 526
LpnPI CCDG 4 cut(s) 219, 480, 498, 684
Lsp1109I GCAGC 1 cut(s) 601
LweI GCATC 3 cut(s) 386, 601, 675
MaeI CTAG 2 cut(s) 450, 512
MaeII ACGT 1 cut(s) 549
MaeIII GTNAC 2 cut(s) 118, 686
MalI GATC 3 cut(s) 135, 195, 528
MboI GATC 3 cut(s) 133, 193, 526
MboII GAAGA 9 cut(s) 53, 203, 272, 281, 379, 406, 434, 482, 553
MfeI CAATTG 1 cut(s) 381
MflI RGATCY 2 cut(s) 133, 193
MhlI GDGCHC 1 cut(s) 114
MluCI AATT 8 cut(s) 34, 147, 306, 313, 381, 601, 654, 746
MlyI GAGTC 2 cut(s) 497, 781
MnlI CCTC 2 cut(s) 119, 292
MroXI GAANNNNTTC 1 cut(s) 183
MseI TTAA 5 cut(s) 225, 311, 636, 657, 749
MslI CAYNNNNRTG 1 cut(s) 552
MspI CCGG 1 cut(s) 467
MunI CAATTG 1 cut(s) 381
Mva1269I GAATGC 1 cut(s) 757
MwoI GCNNNNNNNGC 1 cut(s) 383
NdeII GATC 3 cut(s) 133, 193, 526
NlaIII CATG 3 cut(s) 63, 164, 191
NlaIV GGNNCC 1 cut(s) 135
NmuCI GTSAC 1 cut(s) 118
NspV TTCGAA 1 cut(s) 761
OliI CACNNNNGTG 1 cut(s) 552
PagI TCATGA 1 cut(s) 187
PcsI WCGNNNNNNNCGW 1 cut(s) 451
PctI GAATGC 1 cut(s) 757
PdmI GAANNNNTTC 1 cut(s) 183
PfeI GAWTC 1 cut(s) 179
PflMI CCANNNNNTGG 1 cut(s) 614
PkrI GCNGC 1 cut(s) 591
PleI GAGTC 2 cut(s) 496, 780
PpsI GAGTC 2 cut(s) 496, 780
Ppu21I YACGTR 1 cut(s) 550
PspN4I GGNNCC 1 cut(s) 135
PstNI CAGNNNCTG 1 cut(s) 595
PsuI RGATCY 2 cut(s) 133, 193
RsaI GTAC 1 cut(s) 355
RsaNI GTAC 1 cut(s) 354
RseI CAYNNNNRTG 1 cut(s) 552
SaqAI TTAA 5 cut(s) 225, 311, 636, 657, 749
SatI GCNGC 1 cut(s) 590
Sau3AI GATC 3 cut(s) 133, 193, 526
SchI GAGTC 2 cut(s) 497, 781
SduI GDGCHC 1 cut(s) 114
SetI ASST 5 cut(s) 204, 331, 513, 552, 755
SfaNI GCATC 3 cut(s) 386, 601, 675
SfuI TTCGAA 1 cut(s) 761
SmiMI CAYNNNNRTG 1 cut(s) 552
SmlI CTYRAG 1 cut(s) 197
SmoI CTYRAG 1 cut(s) 197
Sse9I AATT 8 cut(s) 34, 147, 306, 313, 381, 601, 654, 746
SspMI CTAG 2 cut(s) 450, 512
StyI CCWWGG 1 cut(s) 704
TaiI ACGT 1 cut(s) 552
TaqI TCGA 2 cut(s) 432, 761
TasI AATT 8 cut(s) 34, 147, 306, 313, 381, 601, 654, 746
TatI WGTACW 1 cut(s) 353
TfiI GAWTC 1 cut(s) 179
Tru1I TTAA 5 cut(s) 225, 311, 636, 657, 749
Tru9I TTAA 5 cut(s) 225, 311, 636, 657, 749
TseFI GTSAC 1 cut(s) 118
TseI GCWGC 1 cut(s) 589
Tsp45I GTSAC 1 cut(s) 118
TspDTI ATGAA 7 cut(s) 176, 204, 264, 273, 282, 413, 654
Van91I CCANNNNNTGG 1 cut(s) 614
XapI RAATTY 4 cut(s) 34, 147, 306, 313
XmnI GAANNNNTTC 1 cut(s) 183
XspI CTAG 2 cut(s) 450, 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.