Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0014716

Physical Location & Seq

Genomic Coordinates Reverse (-)

29098926 .. 29102122

Gene Structure 3197 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00105670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGATACAGAATGGATATATTATCCCAGAAACTCTGAAACCTACCGTGCTGGAGCTCAATTGTATGTTGATAGACTTCACACTAGCTTGGGGAATCCAGCTATCATGCAATGCCCTTGTCGCCTCTGCAAAAATATGCAGTGGCATTCCCCTAAGTTAGTTTTTGGTCACTTGTGCATGAATGAGATCCATCCTCTTCATGTTAGTCGAATCTTACATGGTGAGAAGTCGACAACATATGTACAAGAAGAGAATGTTCAAGTTCCAGAAACGTACAGAATTTTGAAAGATGCATACTTTCAAGATGATGTTGATGCATTTAGTACTCATTTTTCTCTTTGTTTGATTTCTGATGCTTTAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005732 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0032040 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0044085 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BING4CT WD40

Protein Analysis

121

Amino Acids

14.09

Weight (kDa)

5.92

Isoelectric Point (pI)

27.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transpos_assoc	PF13963	4 - 75	9.5e-11	Transposase-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014716)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g16175
rosa_multiflora	Rmu_sc0000633.1_g000011 Rmu_sc0001320.1_g000013 Rmu_sc0002244.1_g000023 Rmu_sc0002662.1_g000007 Rmu_sc0003152.1_g000001 Rmu_sc0004596.1_g000037
rosa_roxburghii	Rroxscaffold_2G00105670 Rroxscaffold_5G00368480
rosa_samantha	Rh2DG504200 Rh3CG072100 Rh5CG263500 Rh5CG466600 Rh5DG558700 Rh6CG061600 Rh7BG187700
rosa_wichuraiana	Rw7G035340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	230
AclWI	GGATC	1 cut(s)	181
AcsI	RAATTY	1 cut(s)	279
AfaI	GTAC	3 cut(s)	243, 275, 325
AgsI	TTSAA	3 cut(s)	260, 286, 302
AluBI	AGCT	3 cut(s)	56, 87, 101
AluI	AGCT	3 cut(s)	56, 87, 101
Alw21I	GWGCWC	1 cut(s)	58
AlwI	GGATC	1 cut(s)	181
ApoI	RAATTY	1 cut(s)	279
AsuHPI	GGTGA	1 cut(s)	233
BanII	GRGCYC	1 cut(s)	58
Bbv12I	GWGCWC	1 cut(s)	58
BccI	CCATC	1 cut(s)	198
BfaI	CTAG	1 cut(s)	84
BmcAI	AGTACT	1 cut(s)	325
BmsI	GCATC	3 cut(s)	280, 304, 343
BpmI	CTGGAG	1 cut(s)	72
Bse3DI	GCAATG	1 cut(s)	116
BseGI	GGATG	1 cut(s)	190
BseMI	GCAATG	1 cut(s)	116
BsiHKAI	GWGCWC	1 cut(s)	58
BsmI	GAATGC	1 cut(s)	145
Bsp1286I	GDGCHC	1 cut(s)	58
Bsp1407I	TGTACA	1 cut(s)	241
Bsp143I	GATC	1 cut(s)	186
BspPI	GGATC	1 cut(s)	181
BsrDI	GCAATG	1 cut(s)	116
BsrGI	TGTACA	1 cut(s)	241
BssMI	GATC	1 cut(s)	186
Bst4CI	ACNGT	1 cut(s)	47
Bst6I	CTCTTC	2 cut(s)	201, 243
BstAUI	TGTACA	1 cut(s)	241
BstDEI	CTNAG	1 cut(s)	153
BstF5I	GGATG	1 cut(s)	190
BstKTI	GATC	1 cut(s)	189
BstMBI	GATC	1 cut(s)	186
BstMWI	GCNNNNNNNGC	1 cut(s)	120
BstX2I	RGATCY	1 cut(s)	186
BstYI	RGATCY	1 cut(s)	186
BtsCI	GGATG	1 cut(s)	190
BtsI	GCAGTG	1 cut(s)	146
BtsIMutI	CAGTG	1 cut(s)	146
Csp6I	GTAC	3 cut(s)	242, 274, 324
CviAII	CATG	4 cut(s)	106, 178, 200, 218
CviJI	RGCY	3 cut(s)	56, 87, 101
CviKI_1	RGCY	3 cut(s)	56, 87, 101
CviQI	GTAC	3 cut(s)	242, 274, 324
DdeI	CTNAG	1 cut(s)	153
DpnI	GATC	1 cut(s)	188
DpnII	GATC	1 cut(s)	186
Eam1104I	CTCTTC	2 cut(s)	201, 243
EarI	CTCTTC	2 cut(s)	201, 243
Ecl136II	GAGCTC	1 cut(s)	56
Eco24I	GRGCYC	1 cut(s)	58
Eco53kI	GAGCTC	1 cut(s)	56
EcoICRI	GAGCTC	1 cut(s)	56
EcoT22I	ATGCAT	2 cut(s)	295, 319
EcoT38I	GRGCYC	1 cut(s)	58
FaeI	CATG	4 cut(s)	109, 181, 203, 221
FatI	CATG	4 cut(s)	105, 177, 199, 217
FauNDI	CATATG	1 cut(s)	238
FblI	GTMKAC	1 cut(s)	230
FokI	GGATG	1 cut(s)	177
FriOI	GRGCYC	1 cut(s)	58
FspBI	CTAG	1 cut(s)	84
GsuI	CTGGAG	1 cut(s)	72
Hin1II	CATG	4 cut(s)	109, 181, 203, 221
HincII	GTYRAC	1 cut(s)	231
HindII	GTYRAC	1 cut(s)	231
HinfI	GANTC	2 cut(s)	94, 210
HphI	GGTGA	1 cut(s)	233
Hpy166II	GTNNAC	1 cut(s)	231
Hpy188I	TCNGA	2 cut(s)	37, 352
Hpy188III	TCNNGA	2 cut(s)	266, 302
Hpy8I	GTNNAC	1 cut(s)	231
HpyCH4III	ACNGT	1 cut(s)	47
HpyCH4IV	ACGT	1 cut(s)	272
HpyCH4V	TGCA	6 cut(s)	109, 129, 139, 177, 293, 317
HpyF10VI	GCNNNNNNNGC	1 cut(s)	120
HpyF3I	CTNAG	1 cut(s)	153
HpySE526I	ACGT	1 cut(s)	272
Hsp92II	CATG	4 cut(s)	109, 181, 203, 221
Kzo9I	GATC	1 cut(s)	186
LmnI	GCTCC	1 cut(s)	53
LpnPI	CCDG	4 cut(s)	36, 40, 111, 279
LweI	GCATC	3 cut(s)	280, 304, 343
MaeI	CTAG	1 cut(s)	84
MaeII	ACGT	1 cut(s)	272
MaeIII	GTNAC	1 cut(s)	167
MalI	GATC	1 cut(s)	188
MboI	GATC	1 cut(s)	186
MboII	GAAGA	2 cut(s)	188, 260
MfeI	CAATTG	1 cut(s)	59
MflI	RGATCY	1 cut(s)	186
MhlI	GDGCHC	1 cut(s)	58
MluCI	AATT	2 cut(s)	59, 279
MnlI	CCTC	2 cut(s)	134, 204
Mph1103I	ATGCAT	2 cut(s)	295, 319
MunI	CAATTG	1 cut(s)	59
Mva1269I	GAATGC	1 cut(s)	145
MwoI	GCNNNNNNNGC	1 cut(s)	120
NdeI	CATATG	1 cut(s)	238
NdeII	GATC	1 cut(s)	186
NlaIII	CATG	4 cut(s)	109, 181, 203, 221
NmuCI	GTSAC	1 cut(s)	167
NsiI	ATGCAT	2 cut(s)	295, 319
PctI	GAATGC	1 cut(s)	145
PfeI	GAWTC	2 cut(s)	94, 210
Psp124BI	GAGCTC	1 cut(s)	58
PsuI	RGATCY	1 cut(s)	186
RsaI	GTAC	3 cut(s)	243, 275, 325
RsaNI	GTAC	3 cut(s)	242, 274, 324
SacI	GAGCTC	1 cut(s)	58
SalI	GTCGAC	1 cut(s)	229
Sau3AI	GATC	1 cut(s)	186
ScaI	AGTACT	1 cut(s)	325
SduI	GDGCHC	1 cut(s)	58
SetI	ASST	5 cut(s)	44, 58, 89, 103, 275
SfaNI	GCATC	3 cut(s)	280, 304, 343
Sse9I	AATT	2 cut(s)	59, 279
SspMI	CTAG	1 cut(s)	84
SstI	GAGCTC	1 cut(s)	58
TaaI	ACNGT	1 cut(s)	47
TaiI	ACGT	1 cut(s)	275
TaqI	TCGA	2 cut(s)	208, 230
TasI	AATT	2 cut(s)	59, 279
TatI	WGTACW	2 cut(s)	241, 323
TfiI	GAWTC	2 cut(s)	94, 210
TscAI	CASTG	1 cut(s)	146
TseFI	GTSAC	1 cut(s)	167
Tsp45I	GTSAC	1 cut(s)	167
TspDTI	ATGAA	2 cut(s)	188, 194
TspRI	CASTG	1 cut(s)	146
XapI	RAATTY	1 cut(s)	279
XmiI	GTMKAC	1 cut(s)	230
XspI	CTAG	1 cut(s)	84
ZrmI	AGTACT	1 cut(s)	325
Zsp2I	ATGCAT	2 cut(s)	295, 319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.