Rmu_sc0002244.1_g000023

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002244.1
OG0014716
Physical Location & Seq
Reverse (-)
99851 .. 100521
671 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002244.1_g000023.1.cds

Sequence Viewer

Length: 567 bp
atggagaaagaatggctgcaatttgatagatttaaggatgaatacagagtgggagctcgtatgtttgtggataaagcaagggcagattatgggaattctgaagatgagattatatgcccatgtatcaaatgtagaaactctgaacaccaccactttgagatagtctatgagcacttcgtaacaagaggagtggatcctacttacaaaatttggatttgtcatggtgaaacaggaagtgaacccaatcatgaagatcttgagattcctcagacatataagtatatgaaagtattgaaaggatatgtgatgaatcgtacacaccctgaaggatgcatagctggaaggtacctcgctgaagaatgctcaatattgtgtagcaaatatataaaacaagctgctgaaataggccataaatatggacgcaatgaggagtttgacattggtttgttgatagaagggaatgccctttcaaaggcaaagaaaataactcttgcacctgagatgttacgtgctgctcatcactatgtgttgataaattctgatgaaagccgaccatatagcaagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21

Protein Analysis

188

Amino Acids

21.89

Weight (kDa)

6.21

Isoelectric Point (pI)

33.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 345
AccB1I GGYRCC 1 cut(s) 345
AclWI GGATC 2 cut(s) 188, 201
AcsI RAATTY 3 cut(s) 94, 207, 535
AcuI CTGAAG 3 cut(s) 120, 345, 375
AdeI CACNNNGTG 1 cut(s) 526
AfaI GTAC 2 cut(s) 316, 347
AfiI CCNNNNNNNGG 1 cut(s) 472
AgsI TTSAA 2 cut(s) 295, 471
AluBI AGCT 3 cut(s) 56, 338, 395
AluI AGCT 3 cut(s) 56, 338, 395
Alw21I GWGCWC 2 cut(s) 58, 174
AlwI GGATC 2 cut(s) 188, 201
AoxI GGCC 1 cut(s) 406
ApeKI GCWGC 3 cut(s) 16, 395, 512
ApoI RAATTY 3 cut(s) 94, 207, 535
Asp718I GGTACC 1 cut(s) 345
AsuHPI GGTGA 1 cut(s) 236
BamHI GGATCC 1 cut(s) 193
BanI GGYRCC 1 cut(s) 345
BanII GRGCYC 1 cut(s) 58
Bbv12I GWGCWC 2 cut(s) 58, 174
BbvI GCAGC 3 cut(s) 3, 382, 499
BglII AGATCT 1 cut(s) 253
BisI GCNGC 3 cut(s) 17, 396, 513
BlsI GCNGC 3 cut(s) 18, 397, 514
BmiI GGNNCC 2 cut(s) 195, 347
BmsI GCATC 1 cut(s) 320
BpuEI CTTGAG 1 cut(s) 278
BsaAI YACGTR 1 cut(s) 509
Bsc4I CCNNNNNNNGG 1 cut(s) 472
Bse3DI GCAATG 1 cut(s) 430
BseGI GGATG 2 cut(s) 43, 335
BseLI CCNNNNNNNGG 1 cut(s) 472
BseMI GCAATG 1 cut(s) 430
BseMII CTCAG 2 cut(s) 281, 489
BseRI GAGGAG 2 cut(s) 201, 443
BseXI GCAGC 3 cut(s) 3, 382, 499
BshFI GGCC 1 cut(s) 408
BshNI GGYRCC 1 cut(s) 345
BsiHKAI GWGCWC 2 cut(s) 58, 174
BslI CCNNNNNNNGG 1 cut(s) 472
BsmI GAATGC 2 cut(s) 365, 466
BsnI GGCC 1 cut(s) 408
Bsp1286I GDGCHC 2 cut(s) 58, 174
Bsp143I GATC 2 cut(s) 193, 253
BspANI GGCC 1 cut(s) 408
BspCNI CTCAG 2 cut(s) 280, 490
BspHI TCATGA 1 cut(s) 247
BspLI GGNNCC 2 cut(s) 195, 347
BspPI GGATC 2 cut(s) 188, 201
BspT107I GGYRCC 1 cut(s) 345
BsrDI GCAATG 1 cut(s) 430
BssMI GATC 2 cut(s) 193, 253
BstBAI YACGTR 1 cut(s) 509
BstDEI CTNAG 2 cut(s) 267, 498
BstENI CCTNNNNNAGG 1 cut(s) 470
BstF5I GGATG 2 cut(s) 43, 335
BstKTI GATC 2 cut(s) 196, 256
BstMBI GATC 2 cut(s) 193, 253
BstV1I GCAGC 3 cut(s) 3, 382, 499
BstX2I RGATCY 2 cut(s) 193, 253
BstXI CCANNNNNNTGG 1 cut(s) 416
BstYI RGATCY 2 cut(s) 193, 253
BsuRI GGCC 1 cut(s) 408
BtsCI GGATG 2 cut(s) 43, 335
CciI TCATGA 1 cut(s) 247
CseI GACGC 1 cut(s) 429
Csp6I GTAC 2 cut(s) 315, 346
CspCI CAANNNNNGTGG 2 cut(s) 171, 206
CviAII CATG 3 cut(s) 120, 221, 248
CviJI RGCY 6 cut(s) 16, 56, 338, 395, 408, 549
CviKI_1 RGCY 6 cut(s) 16, 56, 338, 395, 408, 549
CviQI GTAC 2 cut(s) 315, 346
DdeI CTNAG 2 cut(s) 267, 498
DpnI GATC 2 cut(s) 195, 255
DpnII GATC 2 cut(s) 193, 253
DraIII CACNNNGTG 1 cut(s) 526
Ecl136II GAGCTC 1 cut(s) 56
Eco24I GRGCYC 1 cut(s) 58
Eco53kI GAGCTC 1 cut(s) 56
Eco57I CTGAAG 3 cut(s) 120, 345, 375
EcoICRI GAGCTC 1 cut(s) 56
EcoNI CCTNNNNNAGG 1 cut(s) 470
EcoRI GAATTC 1 cut(s) 94
EcoT22I ATGCAT 1 cut(s) 335
EcoT38I GRGCYC 1 cut(s) 58
FaeI CATG 3 cut(s) 123, 224, 251
FatI CATG 3 cut(s) 119, 220, 247
Fnu4HI GCNGC 3 cut(s) 17, 396, 513
FokI GGATG 2 cut(s) 50, 342
FriOI GRGCYC 1 cut(s) 58
Fsp4HI GCNGC 3 cut(s) 17, 396, 513
GluI GCNGC 3 cut(s) 17, 396, 513
HaeIII GGCC 1 cut(s) 408
HgaI GACGC 1 cut(s) 429
Hin1II CATG 3 cut(s) 123, 224, 251
HinfI GANTC 2 cut(s) 262, 310
HphI GGTGA 1 cut(s) 236
Hpy166II GTNNAC 2 cut(s) 239, 317
Hpy188I TCNGA 4 cut(s) 100, 142, 270, 541
Hpy188III TCNNGA 2 cut(s) 248, 257
Hpy8I GTNNAC 2 cut(s) 239, 317
HpyAV CCTTC 3 cut(s) 320, 336, 449
HpyCH4IV ACGT 1 cut(s) 508
HpyCH4V TGCA 3 cut(s) 19, 333, 494
HpyF3I CTNAG 2 cut(s) 267, 498
HpySE526I ACGT 1 cut(s) 508
Hsp92II CATG 3 cut(s) 123, 224, 251
KpnI GGTACC 1 cut(s) 349
Kzo9I GATC 2 cut(s) 193, 253
LmnI GCTCC 1 cut(s) 53
LpnPI CCDG 4 cut(s) 216, 324, 336, 510
Lsp1109I GCAGC 3 cut(s) 3, 382, 499
LweI GCATC 1 cut(s) 320
MaeII ACGT 1 cut(s) 508
MaeIII GTNAC 2 cut(s) 178, 504
MalI GATC 2 cut(s) 195, 255
MboI GATC 2 cut(s) 193, 253
MboII GAAGA 3 cut(s) 113, 263, 368
MflI RGATCY 2 cut(s) 193, 253
MhlI GDGCHC 2 cut(s) 58, 174
MluCI AATT 4 cut(s) 20, 94, 207, 535
MnlI CCTC 4 cut(s) 179, 276, 359, 421
Mph1103I ATGCAT 1 cut(s) 335
MseI TTAA 1 cut(s) 33
MslI CAYNNNNRTG 2 cut(s) 414, 522
Mva1269I GAATGC 2 cut(s) 365, 466
NdeII GATC 2 cut(s) 193, 253
NlaIII CATG 3 cut(s) 123, 224, 251
NlaIV GGNNCC 2 cut(s) 195, 347
NsiI ATGCAT 1 cut(s) 335
PagI TCATGA 1 cut(s) 247
PctI GAATGC 2 cut(s) 365, 466
PfeI GAWTC 2 cut(s) 262, 310
PkrI GCNGC 3 cut(s) 18, 397, 514
Ppu21I YACGTR 1 cut(s) 509
Psp124BI GAGCTC 1 cut(s) 58
PspN4I GGNNCC 2 cut(s) 195, 347
PsuI RGATCY 2 cut(s) 193, 253
RsaI GTAC 2 cut(s) 316, 347
RsaNI GTAC 2 cut(s) 315, 346
RseI CAYNNNNRTG 2 cut(s) 414, 522
SacI GAGCTC 1 cut(s) 58
SaqAI TTAA 1 cut(s) 33
SatI GCNGC 3 cut(s) 17, 396, 513
Sau3AI GATC 2 cut(s) 193, 253
SduI GDGCHC 2 cut(s) 58, 174
SetI ASST 7 cut(s) 58, 340, 347, 351, 397, 499, 511
SfaNI GCATC 1 cut(s) 320
SmiMI CAYNNNNRTG 2 cut(s) 414, 522
SmlI CTYRAG 1 cut(s) 257
SmoI CTYRAG 1 cut(s) 257
Sse9I AATT 4 cut(s) 20, 94, 207, 535
SspI AATATT 1 cut(s) 369
SstI GAGCTC 1 cut(s) 58
TaiI ACGT 1 cut(s) 511
TasI AATT 4 cut(s) 20, 94, 207, 535
TfiI GAWTC 2 cut(s) 262, 310
Tru1I TTAA 1 cut(s) 33
Tru9I TTAA 1 cut(s) 33
TseI GCWGC 3 cut(s) 16, 395, 512
TspDTI ATGAA 5 cut(s) 54, 264, 299, 323, 558
XagI CCTNNNNNAGG 1 cut(s) 470
XapI RAATTY 3 cut(s) 94, 207, 535
Zsp2I ATGCAT 1 cut(s) 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.