Rw7G035340

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0014716
Physical Location & Seq
Forward (+)
52663044 .. 52664018
975 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G035340.1

Sequence Viewer

Length: 882 bp
ATGGAAAAAGAATGGACCAAATATGAAAGAAACACAGTTATCTATAAACAAGGAGCAAGGAAGTTCGTTGATAACGTCCAAACGAGTATGGGGAATCCAGAAAGGATTCGTTGTCCTTGTAACAATTGTATAAGTTTCAAACGCCACAACTTTAATGTAGTATATGACCACCTGATCTGCTATGGGATAGATCATCTTTATAGTAAGTGGACATGGCATGGGGATGAGCCAACATTACCAGATGAAAATAATGTGGAAATGCCTGAAACATATAGAATGTTTCAGGATGCACTTTTTGAAGATAATGATGCATTTTCTAAAGAAAATGATGTTAGGGAACCTGGAGATGAAGGAGAAGAGCCTGATTTTGGACATTTATTAGAGGAGGCAGAACGTCCTATCTATAAAGGCTCTACTTTGTCAAAAATGTCGGCAACAGTAACTATGTGTAAGTTTAAGGCAAGGCATGGTTTGTCTAATATAGGGTTTGATGACATGGTTGAGATGATTCGTGGGTTTCTACCGCATGACAACACTCTTCCTAGCCCTTTGTACAATGCAAAAAAATTGTTAAATGCATTTGATCTAGGTTATGAAAAAATACATGCTTGTGTTAGAGATTGTTGTCTATTTAGAAAAGAACTAGAACATGCAGATAAGTGTCCTAAGTGTGGCTCATCACGCTGGAAAGTTGATAAGCGCACACAAAAGATTCAAGAACGAGTTCCAGCGAAGGTACTCAGATACTTTCCAATCATACCTAGATTTAGAAGGATGTTCAAGTCAGTTGAGAAGGCAGAACAATTAAGGTGGCATCACACACACAAGAGTCAGGATGGCATATGCACCACCTGGTTGACTCGTTGGCATGGAAGAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 Transpos_assoc

Protein Analysis

293

Amino Acids

34.56

Weight (kDa)

8.22

Isoelectric Point (pI)

41.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transpos_assoc PF13963 3 - 74 5.7e-15 Transposase-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 524
AfaI GTAC 2 cut(s) 554, 738
AfiI CCNNNNNNNGG 2 cut(s) 368, 671
AgsI TTSAA 4 cut(s) 139, 299, 716, 781
AjnI CCWGG 2 cut(s) 340, 851
Asp700I GAANNNNTTC 2 cut(s) 105, 723
AspLEI GCGC 1 cut(s) 702
AspS9I GGNCC 1 cut(s) 15
AvaII GGWCC 1 cut(s) 15
BccI CCATC 1 cut(s) 830
BciT130I CCWGG 2 cut(s) 342, 853
BfaI CTAG 4 cut(s) 543, 587, 644, 762
Bme1390I CCNGG 2 cut(s) 342, 853
Bme18I GGWCC 1 cut(s) 15
BmgT120I GGNCC 1 cut(s) 15
BmiI GGNNCC 1 cut(s) 339
BmrFI CCNGG 2 cut(s) 342, 853
BmsI GCATC 3 cut(s) 277, 298, 823
BpmI CTGGAG 1 cut(s) 363
Bsc4I CCNNNNNNNGG 2 cut(s) 368, 671
BseBI CCWGG 2 cut(s) 342, 853
BseGI GGATG 4 cut(s) 229, 292, 780, 841
BseLI CCNNNNNNNGG 2 cut(s) 368, 671
BseMII CTCAG 1 cut(s) 754
BseRI GAGGAG 1 cut(s) 398
BslI CCNNNNNNNGG 2 cut(s) 368, 671
Bsp1407I TGTACA 1 cut(s) 552
Bsp143I GATC 3 cut(s) 174, 190, 583
BspACI CCGC 1 cut(s) 524
BspCNI CTCAG 1 cut(s) 753
BspLI GGNNCC 1 cut(s) 339
BspQI GCTCTTC 2 cut(s) 351, 868
BsrGI TGTACA 1 cut(s) 552
BssMI GATC 3 cut(s) 174, 190, 583
Bst2UI CCWGG 2 cut(s) 342, 853
Bst4CI ACNGT 2 cut(s) 37, 439
Bst6I CTCTTC 3 cut(s) 351, 543, 868
BstAUI TGTACA 1 cut(s) 552
BstDEI CTNAG 2 cut(s) 666, 740
BstF5I GGATG 4 cut(s) 229, 292, 780, 841
BstHHI GCGC 1 cut(s) 702
BstKTI GATC 3 cut(s) 177, 193, 586
BstMBI GATC 3 cut(s) 174, 190, 583
BstMWI GCNNNNNNNGC 1 cut(s) 681
BstNI CCWGG 2 cut(s) 342, 853
BstNSI RCATGY 2 cut(s) 608, 653
BstSCI CCNGG 2 cut(s) 340, 851
BtsCI GGATG 4 cut(s) 229, 292, 780, 841
CfoI GCGC 1 cut(s) 702
Cfr13I GGNCC 1 cut(s) 15
CsiI ACCWGGT 1 cut(s) 851
Csp6I GTAC 2 cut(s) 553, 737
CspCI CAANNNNNGTGG 2 cut(s) 791, 826
CviAII CATG 8 cut(s) 213, 218, 467, 496, 527, 605, 650, 869
CviJI RGCY 5 cut(s) 229, 361, 411, 546, 675
CviKI_1 RGCY 5 cut(s) 229, 361, 411, 546, 675
CviQI GTAC 2 cut(s) 553, 737
DdeI CTNAG 2 cut(s) 666, 740
DpnI GATC 3 cut(s) 176, 192, 585
DpnII GATC 3 cut(s) 174, 190, 583
Eam1104I CTCTTC 3 cut(s) 351, 543, 868
EarI CTCTTC 3 cut(s) 351, 543, 868
Eco47I GGWCC 1 cut(s) 15
EcoRII CCWGG 2 cut(s) 340, 851
EcoT22I ATGCAT 2 cut(s) 313, 580
FaeI CATG 8 cut(s) 216, 221, 470, 499, 530, 608, 653, 872
FatI CATG 8 cut(s) 212, 217, 466, 495, 526, 604, 649, 868
FauNDI CATATG 1 cut(s) 842
FokI GGATG 4 cut(s) 236, 299, 787, 848
FspBI CTAG 4 cut(s) 543, 587, 644, 762
GlaI GCGC 1 cut(s) 701
GsuI CTGGAG 1 cut(s) 363
HhaI GCGC 1 cut(s) 702
Hin1II CATG 8 cut(s) 216, 221, 470, 499, 530, 608, 653, 872
Hin6I GCGC 1 cut(s) 700
HinP1I GCGC 1 cut(s) 700
HincII GTYRAC 1 cut(s) 858
HindII GTYRAC 1 cut(s) 858
HinfI GANTC 6 cut(s) 94, 106, 508, 712, 829, 859
Hpy166II GTNNAC 2 cut(s) 210, 858
Hpy188I TCNGA 1 cut(s) 743
Hpy188III TCNNGA 4 cut(s) 98, 284, 716, 833
Hpy8I GTNNAC 2 cut(s) 210, 858
HpyAV CCTTC 4 cut(s) 344, 727, 765, 787
HpyCH4III ACNGT 2 cut(s) 37, 439
HpyCH4IV ACGT 2 cut(s) 75, 394
HpyCH4V TGCA 6 cut(s) 290, 311, 560, 578, 653, 846
HpyF10VI GCNNNNNNNGC 1 cut(s) 681
HpyF3I CTNAG 2 cut(s) 666, 740
HpySE526I ACGT 2 cut(s) 75, 394
Hsp92II CATG 8 cut(s) 216, 221, 470, 499, 530, 608, 653, 872
HspAI GCGC 1 cut(s) 700
Kzo9I GATC 3 cut(s) 174, 190, 583
LguI GCTCTTC 2 cut(s) 351, 868
LmnI GCTCC 1 cut(s) 53
LweI GCATC 3 cut(s) 277, 298, 823
MabI ACCWGGT 1 cut(s) 851
MaeI CTAG 4 cut(s) 543, 587, 644, 762
MaeII ACGT 2 cut(s) 75, 394
MaeIII GTNAC 2 cut(s) 119, 439
MalI GATC 3 cut(s) 176, 192, 585
MboI GATC 3 cut(s) 174, 190, 583
MboII GAAGA 3 cut(s) 311, 368, 530
MfeI CAATTG 1 cut(s) 124
MluCI AATT 3 cut(s) 124, 566, 803
MlyI GAGTC 2 cut(s) 838, 853
MnlI CCTC 2 cut(s) 376, 379
Mph1103I ATGCAT 2 cut(s) 313, 580
MroXI GAANNNNTTC 2 cut(s) 105, 723
MseI TTAA 4 cut(s) 153, 456, 572, 806
MslI CAYNNNNRTG 2 cut(s) 222, 609
MspR9I CCNGG 2 cut(s) 342, 853
MunI CAATTG 1 cut(s) 124
MvaI CCWGG 2 cut(s) 342, 853
MwoI GCNNNNNNNGC 1 cut(s) 681
NdeI CATATG 1 cut(s) 842
NdeII GATC 3 cut(s) 174, 190, 583
NlaIII CATG 8 cut(s) 216, 221, 470, 499, 530, 608, 653, 872
NlaIV GGNNCC 1 cut(s) 339
NsiI ATGCAT 2 cut(s) 313, 580
NspI RCATGY 2 cut(s) 608, 653
PciSI GCTCTTC 2 cut(s) 351, 868
PcsI WCGNNNNNNNCGW 1 cut(s) 72
PdmI GAANNNNTTC 2 cut(s) 105, 723
PfeI GAWTC 4 cut(s) 94, 106, 508, 712
PleI GAGTC 2 cut(s) 837, 853
PpsI GAGTC 2 cut(s) 837, 853
Psp6I CCWGG 2 cut(s) 340, 851
PspGI CCWGG 2 cut(s) 340, 851
PspN4I GGNNCC 1 cut(s) 339
PspPI GGNCC 1 cut(s) 15
RsaI GTAC 2 cut(s) 554, 738
RsaNI GTAC 2 cut(s) 553, 737
RseI CAYNNNNRTG 2 cut(s) 222, 609
SapI GCTCTTC 2 cut(s) 351, 868
SaqAI TTAA 4 cut(s) 153, 456, 572, 806
Sau3AI GATC 3 cut(s) 174, 190, 583
Sau96I GGNCC 1 cut(s) 15
SchI GAGTC 2 cut(s) 838, 853
ScrFI CCNGG 2 cut(s) 342, 853
SetI ASST 9 cut(s) 78, 174, 343, 397, 592, 738, 763, 812, 854
SexAI ACCWGGT 1 cut(s) 851
SfaNI GCATC 3 cut(s) 277, 298, 823
SinI GGWCC 1 cut(s) 15
SmiMI CAYNNNNRTG 2 cut(s) 222, 609
Sse9I AATT 3 cut(s) 124, 566, 803
SsiI CCGC 1 cut(s) 524
SspMI CTAG 4 cut(s) 543, 587, 644, 762
StyD4I CCNGG 2 cut(s) 340, 851
TaaI ACNGT 2 cut(s) 37, 439
TaiI ACGT 2 cut(s) 78, 397
TasI AATT 3 cut(s) 124, 566, 803
TatI WGTACW 1 cut(s) 552
TfiI GAWTC 4 cut(s) 94, 106, 508, 712
Tru1I TTAA 4 cut(s) 153, 456, 572, 806
Tru9I TTAA 4 cut(s) 153, 456, 572, 806
TspDTI ATGAA 4 cut(s) 39, 258, 363, 609
VpaK11BI GGWCC 1 cut(s) 15
XceI RCATGY 2 cut(s) 608, 653
XmnI GAANNNNTTC 2 cut(s) 105, 723
XspI CTAG 4 cut(s) 543, 587, 644, 762
Zsp2I ATGCAT 2 cut(s) 313, 580
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.