Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0014716

Physical Location & Seq

Genomic Coordinates Reverse (-)

65049396 .. 65050849

Gene Structure 1454 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG466600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGAACCTCAAGGTTGCTGCCCTTTCTGCACTCGGATTGGAGAACAAAGCACAATCAACACTGAAGGAGGGTACTATGCTTGAAGGCAATAGGAAAACTACTGCTGGACACAAAAACTCTGAAACCTACCGTGCTGGAGCTCAATTGTATGTTGATAGACTTCACACTAGCTTGGGGAATCCAGCTATCATGCAATGCCCTTGTCGCCTCTGCAAAAATATGCAGTGGCATTCCCCTAAGTTAGTTTTTGGTCACTTGTGCATGAATGAGATCCATCCTCTTCATGTTAGTCGAATCTTACATGGTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005732 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0032040 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0044085 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BING4CT WD40

Protein Analysis

103

Amino Acids

11.43

Weight (kDa)

9.27

Isoelectric Point (pI)

25.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transpos_assoc	PF13963	36 - 102	2.3e-09	Transposase-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014716)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g16175
rosa_multiflora	Rmu_sc0000633.1_g000011 Rmu_sc0001320.1_g000013 Rmu_sc0002244.1_g000023 Rmu_sc0002662.1_g000007 Rmu_sc0003152.1_g000001 Rmu_sc0004596.1_g000037
rosa_roxburghii	Rroxscaffold_2G00105670 Rroxscaffold_5G00368480
rosa_samantha	Rh2DG504200 Rh3CG072100 Rh5CG263500 Rh5CG466600 Rh5DG558700 Rh6CG061600 Rh7BG187700
rosa_wichuraiana	Rw7G035340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	265
AcuI	CTGAAG	1 cut(s)	83
AfaI	GTAC	1 cut(s)	73
AgsI	TTSAA	1 cut(s)	83
AluBI	AGCT	3 cut(s)	140, 171, 185
AluI	AGCT	3 cut(s)	140, 171, 185
Alw21I	GWGCWC	1 cut(s)	142
AlwI	GGATC	1 cut(s)	265
ApeKI	GCWGC	1 cut(s)	17
BanII	GRGCYC	1 cut(s)	142
Bbv12I	GWGCWC	1 cut(s)	142
BbvI	GCAGC	1 cut(s)	4
BccI	CCATC	1 cut(s)	282
BfaI	CTAG	1 cut(s)	168
BisI	GCNGC	1 cut(s)	18
BlsI	GCNGC	1 cut(s)	19
BpmI	CTGGAG	1 cut(s)	156
Bse3DI	GCAATG	1 cut(s)	200
BseGI	GGATG	1 cut(s)	274
BseMI	GCAATG	1 cut(s)	200
BseXI	GCAGC	1 cut(s)	4
BsgI	GTGCAG	1 cut(s)	12
BsiHKAI	GWGCWC	1 cut(s)	142
BsmI	GAATGC	1 cut(s)	229
Bsp1286I	GDGCHC	1 cut(s)	142
Bsp143I	GATC	1 cut(s)	270
BspPI	GGATC	1 cut(s)	265
BsrDI	GCAATG	1 cut(s)	200
BssMI	GATC	1 cut(s)	270
Bst4CI	ACNGT	1 cut(s)	131
Bst6I	CTCTTC	1 cut(s)	285
BstDEI	CTNAG	1 cut(s)	237
BstF5I	GGATG	1 cut(s)	274
BstKTI	GATC	1 cut(s)	273
BstMBI	GATC	1 cut(s)	270
BstMWI	GCNNNNNNNGC	2 cut(s)	26, 204
BstV1I	GCAGC	1 cut(s)	4
BstX2I	RGATCY	1 cut(s)	270
BstYI	RGATCY	1 cut(s)	270
BtsCI	GGATG	1 cut(s)	274
BtsI	GCAGTG	1 cut(s)	230
BtsIMutI	CAGTG	2 cut(s)	59, 230
Csp6I	GTAC	1 cut(s)	72
CviAII	CATG	4 cut(s)	190, 262, 284, 302
CviJI	RGCY	3 cut(s)	140, 171, 185
CviKI_1	RGCY	3 cut(s)	140, 171, 185
CviQI	GTAC	1 cut(s)	72
DdeI	CTNAG	1 cut(s)	237
DpnI	GATC	1 cut(s)	272
DpnII	GATC	1 cut(s)	270
Eam1104I	CTCTTC	1 cut(s)	285
EarI	CTCTTC	1 cut(s)	285
Ecl136II	GAGCTC	1 cut(s)	140
Eco24I	GRGCYC	1 cut(s)	142
Eco53kI	GAGCTC	1 cut(s)	140
Eco57I	CTGAAG	1 cut(s)	83
EcoICRI	GAGCTC	1 cut(s)	140
EcoT38I	GRGCYC	1 cut(s)	142
FaeI	CATG	4 cut(s)	193, 265, 287, 305
FaiI	YATR	7 cut(s)	77, 150, 191, 221, 263, 285, 303
FatI	CATG	4 cut(s)	189, 261, 283, 301
Fnu4HI	GCNGC	1 cut(s)	18
FokI	GGATG	1 cut(s)	261
FriOI	GRGCYC	1 cut(s)	142
Fsp4HI	GCNGC	1 cut(s)	18
FspBI	CTAG	1 cut(s)	168
GluI	GCNGC	1 cut(s)	18
GsuI	CTGGAG	1 cut(s)	156
Hin1II	CATG	4 cut(s)	193, 265, 287, 305
HinfI	GANTC	2 cut(s)	178, 294
Hpy188I	TCNGA	2 cut(s)	35, 121
HpyAV	CCTTC	2 cut(s)	58, 77
HpyCH4III	ACNGT	1 cut(s)	131
HpyCH4V	TGCA	5 cut(s)	29, 193, 213, 223, 261
HpyF10VI	GCNNNNNNNGC	2 cut(s)	26, 204
HpyF3I	CTNAG	1 cut(s)	237
Hsp92II	CATG	4 cut(s)	193, 265, 287, 305
Kzo9I	GATC	1 cut(s)	270
LmnI	GCTCC	1 cut(s)	137
LpnPI	CCDG	3 cut(s)	90, 120, 195
Lsp1109I	GCAGC	1 cut(s)	4
MaeI	CTAG	1 cut(s)	168
MaeIII	GTNAC	1 cut(s)	251
MalI	GATC	1 cut(s)	272
MboI	GATC	1 cut(s)	270
MboII	GAAGA	1 cut(s)	272
MfeI	CAATTG	1 cut(s)	143
MflI	RGATCY	1 cut(s)	270
MhlI	GDGCHC	1 cut(s)	142
MluCI	AATT	1 cut(s)	143
MnlI	CCTC	4 cut(s)	17, 61, 218, 288
MunI	CAATTG	1 cut(s)	143
Mva1269I	GAATGC	1 cut(s)	229
MwoI	GCNNNNNNNGC	2 cut(s)	26, 204
NdeII	GATC	1 cut(s)	270
NlaIII	CATG	4 cut(s)	193, 265, 287, 305
NmuCI	GTSAC	1 cut(s)	251
PctI	GAATGC	1 cut(s)	229
PfeI	GAWTC	2 cut(s)	178, 294
PkrI	GCNGC	1 cut(s)	19
Psp124BI	GAGCTC	1 cut(s)	142
PsuI	RGATCY	1 cut(s)	270
RsaI	GTAC	1 cut(s)	73
RsaNI	GTAC	1 cut(s)	72
SacI	GAGCTC	1 cut(s)	142
SatI	GCNGC	1 cut(s)	18
Sau3AI	GATC	1 cut(s)	270
SduI	GDGCHC	1 cut(s)	142
SetI	ASST	6 cut(s)	9, 15, 128, 142, 173, 187
SmlI	CTYRAG	1 cut(s)	8
SmoI	CTYRAG	1 cut(s)	8
Sse9I	AATT	1 cut(s)	143
SspMI	CTAG	1 cut(s)	168
SstI	GAGCTC	1 cut(s)	142
TaaI	ACNGT	1 cut(s)	131
TaqI	TCGA	1 cut(s)	292
TasI	AATT	1 cut(s)	143
TfiI	GAWTC	2 cut(s)	178, 294
TscAI	CASTG	2 cut(s)	66, 230
TseFI	GTSAC	1 cut(s)	251
TseI	GCWGC	1 cut(s)	17
Tsp45I	GTSAC	1 cut(s)	251
TspDTI	ATGAA	3 cut(s)	17, 272, 278
TspRI	CASTG	2 cut(s)	66, 230
XspI	CTAG	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.